Wall clock time and date at job start Mon Mar 30 2020 01:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36755 * 119.99942 * 2 1 4 4 H 1.07994 * 120.00075 * 185.28648 * 3 2 1 5 5 C 1.39131 * 119.99516 * 5.28935 * 3 2 1 6 6 N 1.31307 * 120.00045 * 5.30633 * 5 3 2 7 7 Si 1.86801 * 119.99613 * 185.29797 * 5 3 2 8 8 H 1.48502 * 109.46751 * 90.00008 * 7 5 3 9 9 H 1.48490 * 109.47392 * 210.00108 * 7 5 3 10 10 H 1.48499 * 109.47490 * 330.00439 * 7 5 3 11 11 C 1.34774 * 120.00531 * 179.97438 * 2 1 3 12 12 O 1.21617 * 120.00332 * 185.91568 * 11 2 1 13 13 C 1.47521 * 119.99741 * 5.91336 * 11 2 1 14 14 C 1.38914 * 120.44216 * 56.18333 * 13 11 2 15 15 C 1.38908 * 120.56600 * 180.02562 * 14 13 11 16 16 C 1.36388 * 121.21698 * 359.97101 * 15 14 13 17 17 C 1.40371 * 120.03957 * 0.02562 * 16 15 14 18 18 N 1.34073 * 121.88094 * 179.97438 * 17 16 15 19 19 C 1.31156 * 120.43573 * 180.02562 * 18 17 16 20 20 N 1.32374 * 122.91205 * 0.26002 * 19 18 17 21 21 C 1.32423 * 121.45455 * 359.47122 * 20 19 18 22 22 O 1.35316 * 120.88575 * 180.25698 * 21 20 19 23 23 C 1.41190 * 118.23339 * 0.50474 * 21 20 19 24 24 H 1.09001 * 109.46923 * 175.15294 * 1 2 3 25 25 H 1.08994 * 109.47678 * 295.15696 * 1 2 3 26 26 H 1.09000 * 109.47102 * 55.15846 * 1 2 3 27 27 H 0.97001 * 119.99995 * 180.02562 * 6 5 3 28 28 H 1.07994 * 119.72115 * 359.97438 * 14 13 11 29 29 H 1.07997 * 119.38918 * 180.02562 * 15 14 13 30 30 H 1.08007 * 119.98217 * 179.97438 * 16 15 14 31 31 H 1.08006 * 118.54520 * 179.97438 * 19 18 17 32 32 H 0.96701 * 114.00472 * 275.27402 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1487 1.1843 0.0000 4 1 3.2252 1.1864 -0.0862 5 6 1.4574 2.3866 0.1111 6 7 0.1611 2.3817 0.3204 7 14 2.3735 4.0078 -0.0373 8 1 2.3931 4.4368 -1.4589 9 1 1.6889 5.0400 0.7818 10 1 3.7666 3.8354 0.4469 11 6 2.1389 -1.1671 0.0005 12 8 3.3503 -1.1698 0.1091 13 6 1.4073 -2.4414 -0.1305 14 6 0.5713 -2.6644 -1.2173 15 6 -0.1193 -3.8631 -1.3430 16 6 0.0025 -4.8503 -0.4098 17 6 0.8370 -4.6656 0.7037 18 7 0.9837 -5.6107 1.6432 19 6 1.7707 -5.4078 2.6726 20 7 2.4493 -4.2850 2.8488 21 6 2.3789 -3.2909 1.9769 22 8 3.0816 -2.1500 2.1659 23 6 1.5469 -3.4508 0.8474 24 1 -0.3633 -1.0240 -0.0868 25 1 -0.3634 0.4368 0.9301 26 1 -0.3633 0.5871 -0.8434 27 1 -0.3209 3.2199 0.3975 28 1 0.4565 -1.8990 -1.9705 29 1 -0.7639 -4.0165 -2.1958 30 1 -0.5441 -5.7744 -0.5272 31 1 1.8660 -6.1898 3.4115 32 1 2.6396 -1.5055 2.7355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136490995.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:19 Heat of formation + Delta-G solvation = 22.848522 kcal Electronic energy + Delta-G solvation = -20952.414024 eV Core-core repulsion = 17686.869082 eV Total energy + Delta-G solvation = -3265.544942 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26017 -38.74736 -37.61911 -36.65202 -34.77958 -32.96741 -31.76052 -31.15275 -29.91923 -26.51094 -25.17958 -24.38994 -23.96004 -22.51102 -19.82297 -18.77556 -18.08974 -17.45117 -17.00005 -16.08697 -15.88194 -15.09407 -14.95774 -14.51997 -14.24512 -14.14101 -13.56193 -13.54493 -12.83812 -12.50039 -12.13022 -11.97333 -11.78018 -11.63608 -11.36800 -11.09427 -10.97460 -10.52293 -10.46293 -10.25446 -10.21109 -9.21020 -9.17520 -9.14327 -8.50953 -8.02551 -7.96183 -6.42056 -3.93568 0.27143 0.86930 1.86311 2.98268 3.10081 3.16400 3.21682 3.60757 3.80259 3.96315 4.19751 4.23193 4.47438 4.64441 4.90102 4.96652 5.10433 5.31869 5.35287 5.48699 5.64408 5.90297 5.98905 6.24036 6.32557 6.40468 6.47709 6.77275 6.92692 7.17217 7.25655 7.40040 7.77768 7.88980 8.24627 8.33012 9.03266 9.24948 9.83438 10.50772 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.027297 B = 0.006133 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.498749 B = 4564.062490 C = 5158.514435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.432 5.432 3 C -0.294 4.294 4 H 0.109 0.891 5 C 0.027 3.973 6 N -0.879 5.879 7 Si 0.934 3.066 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.267 1.267 11 C 0.460 3.540 12 O -0.558 6.558 13 C -0.024 4.024 14 C -0.115 4.115 15 C -0.069 4.069 16 C -0.119 4.119 17 C 0.171 3.829 18 N -0.526 5.526 19 C 0.318 3.682 20 N -0.565 5.565 21 C 0.427 3.573 22 O -0.435 6.435 23 C -0.158 4.158 24 H 0.028 0.972 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.269 0.731 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.196 0.804 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.626 -8.889 0.046 10.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.150 5.150 3 C -0.422 4.422 4 H 0.126 0.874 5 C -0.176 4.176 6 N -0.519 5.519 7 Si 0.760 3.240 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.192 1.192 11 C 0.248 3.752 12 O -0.442 6.442 13 C -0.031 4.031 14 C -0.134 4.134 15 C -0.090 4.090 16 C -0.138 4.138 17 C 0.044 3.956 18 N -0.242 5.242 19 C 0.029 3.971 20 N -0.293 5.293 21 C 0.228 3.772 22 O -0.241 6.241 23 C -0.165 4.165 24 H 0.047 0.953 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.212 0.788 32 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -3.754 -9.656 0.390 10.367 hybrid contribution -0.169 1.735 -0.343 1.777 sum -3.923 -7.920 0.048 8.839 Atomic orbital electron populations 1.21956 0.80186 0.96985 1.04679 1.43661 1.06115 1.04526 1.60659 1.19891 0.93821 0.81701 1.46754 0.87356 1.25406 0.95850 1.00007 0.96354 1.70110 1.07059 1.27624 1.47097 0.85788 0.79503 0.80277 0.78418 1.20196 1.20775 1.19172 1.17544 0.87622 0.82492 0.87529 1.90704 1.12775 1.85820 1.54869 1.20305 0.94318 0.95137 0.93331 1.21465 0.96177 0.97816 0.97980 1.20954 0.97368 0.92461 0.98233 1.20665 0.99579 1.00467 0.93103 1.18794 0.94467 0.88135 0.94158 1.68714 1.20818 1.31230 1.03429 1.24592 0.87023 0.92273 0.93235 1.68042 1.25296 1.03012 1.32950 1.19868 0.82639 0.87524 0.87165 1.84990 1.44196 1.23650 1.71309 1.19546 1.00844 0.97271 0.98810 0.95343 0.90625 0.91553 0.92034 0.84607 0.84708 0.84391 0.78796 0.73322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.25 8.35 59.84 0.50 2.75 16 2 N -0.43 -10.37 3.02 -123.41 -0.37 -10.75 16 3 C -0.29 -7.64 9.55 -15.02 -0.14 -7.78 16 4 H 0.11 2.97 7.20 -52.49 -0.38 2.60 16 5 C 0.03 0.66 5.42 -17.44 -0.09 0.57 16 6 N -0.88 -21.59 9.52 55.50 0.53 -21.07 16 7 Si 0.93 19.64 29.56 -169.99 -5.02 14.61 16 8 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 9 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 11 C 0.46 10.80 5.80 -12.48 -0.07 10.73 16 12 O -0.56 -15.00 14.21 -18.86 -0.27 -15.27 16 13 C -0.02 -0.48 4.64 -104.72 -0.49 -0.97 16 14 C -0.11 -1.86 7.63 -39.08 -0.30 -2.16 16 15 C -0.07 -0.90 9.93 -40.00 -0.40 -1.29 16 16 C -0.12 -1.64 9.99 -39.45 -0.39 -2.04 16 17 C 0.17 2.87 6.61 -84.87 -0.56 2.31 16 18 N -0.53 -8.41 10.44 -12.66 -0.13 -8.54 16 19 C 0.32 4.77 12.22 -92.20 -1.13 3.64 16 20 N -0.57 -9.91 10.42 -14.31 -0.15 -10.05 16 21 C 0.43 8.26 7.83 -16.18 -0.13 8.13 16 22 O -0.43 -8.82 9.41 -41.77 -0.39 -9.21 16 23 C -0.16 -3.01 5.78 -106.42 -0.61 -3.62 16 24 H 0.03 0.53 4.90 -51.93 -0.25 0.27 16 25 H 0.08 1.73 6.87 -51.93 -0.36 1.37 16 26 H 0.07 1.47 7.25 -51.93 -0.38 1.10 16 27 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 28 H 0.14 2.10 7.88 -52.49 -0.41 1.68 16 29 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.20 2.04 8.06 -52.48 -0.42 1.62 16 32 H 0.41 6.81 9.06 45.56 0.41 7.22 16 LS Contribution 277.27 15.07 4.18 4.18 Total: -1.00 -30.95 277.27 -7.22 -38.16 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -1.77 Total: 7.66 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: -3.81 Total: 10.27 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.13 Total: -50.41 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.66 Total: -24.48 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.95 -7.22 -38.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136490995.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.011 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds