Wall clock time and date at job start Mon Mar 30 2020 01:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36868 * 120.00042 * 2 1 4 4 H 1.08000 * 120.00188 * 139.08154 * 3 2 1 5 5 C 1.39050 * 120.00114 * 319.08715 * 3 2 1 6 6 N 1.31370 * 120.00338 * 160.05154 * 5 3 2 7 7 Si 1.86799 * 119.99961 * 340.04979 * 5 3 2 8 8 H 1.48505 * 109.47248 * 93.94863 * 7 5 3 9 9 H 1.48503 * 109.47412 * 213.94486 * 7 5 3 10 10 H 1.48504 * 109.47277 * 333.94841 * 7 5 3 11 11 C 1.34768 * 120.00267 * 180.02562 * 2 1 3 12 12 O 1.21636 * 119.99742 * 5.54369 * 11 2 1 13 13 C 1.47421 * 120.00473 * 185.54357 * 11 2 1 14 14 C 1.39042 * 120.36150 * 316.92061 * 13 11 2 15 15 C 1.40444 * 118.01723 * 179.97438 * 14 13 11 16 16 C 1.40721 * 121.23841 * 180.02562 * 15 14 13 17 17 C 1.36700 * 118.13881 * 180.02562 * 16 15 14 18 18 C 1.39181 * 119.80274 * 359.97438 * 17 16 15 19 19 N 1.31209 * 121.83739 * 359.97438 * 18 17 16 20 20 C 1.33691 * 121.49133 * 0.02562 * 19 18 17 21 21 N 1.33804 * 120.52096 * 179.72333 * 20 19 18 22 22 C 1.31401 * 121.76674 * 179.76021 * 21 20 19 23 23 O 1.35366 * 119.28771 * 180.30027 * 22 21 20 24 24 H 1.09001 * 109.47023 * 264.40838 * 1 2 3 25 25 H 1.09003 * 109.46787 * 24.40595 * 1 2 3 26 26 H 1.08996 * 109.46977 * 144.40640 * 1 2 3 27 27 H 0.96991 * 119.99869 * 180.02562 * 6 5 3 28 28 H 1.08004 * 120.99322 * 0.02562 * 14 13 11 29 29 H 1.07996 * 120.92371 * 0.04544 * 16 15 14 30 30 H 1.08004 * 120.09715 * 180.02562 * 17 16 15 31 31 H 1.07994 * 119.08506 * 179.97438 * 18 17 16 32 32 H 0.96704 * 113.99476 * 270.23056 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.0314 1.2996 0.6126 5 6 1.7089 2.2424 -0.7886 6 7 2.0937 3.4690 -0.5177 7 14 0.5700 1.9186 -2.2335 8 1 -0.8401 2.0896 -1.8003 9 1 0.8718 2.8776 -3.3264 10 1 0.7729 0.5311 -2.7224 11 6 2.1389 -1.1671 -0.0005 12 8 1.5350 -2.2180 -0.1028 13 6 3.6080 -1.1702 0.1228 14 6 4.3751 -0.2565 -0.5913 15 6 5.7702 -0.3029 -0.4364 16 6 6.6111 0.5902 -1.1261 17 6 7.9599 0.4884 -0.9287 18 6 8.4614 -0.4801 -0.0639 19 7 7.6732 -1.3099 0.5777 20 6 6.3451 -1.2660 0.4312 21 7 5.5599 -2.1253 1.0909 22 6 4.2518 -2.1010 0.9688 23 8 3.5050 -2.9902 1.6646 24 1 -0.3633 -0.1001 1.0228 25 1 -0.3633 0.9359 -0.4246 26 1 -0.3633 -0.8356 -0.5981 27 1 1.7861 4.2063 -1.0676 28 1 3.9119 0.4679 -1.2449 29 1 6.2021 1.3352 -1.7924 30 1 8.6344 1.1580 -1.4417 31 1 9.5289 -0.5505 0.0831 32 1 3.3432 -3.8201 1.1953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153744094.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:12 Heat of formation + Delta-G solvation = -7.865980 kcal Electronic energy + Delta-G solvation = -20741.126974 eV Core-core repulsion = 17474.250151 eV Total energy + Delta-G solvation = -3266.876823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.34592 -40.74081 -39.46201 -37.27881 -36.77399 -35.04718 -34.02997 -32.40644 -31.25477 -28.47442 -27.17867 -25.75997 -25.05736 -23.53270 -21.70972 -20.57976 -19.82058 -19.24032 -18.17114 -17.87525 -17.19637 -16.82646 -16.54343 -16.17241 -16.08159 -15.47919 -15.42826 -14.66775 -14.60361 -14.48219 -14.07939 -14.00542 -13.40919 -13.15690 -12.87913 -12.87195 -12.74142 -12.36713 -11.97159 -11.89975 -11.58371 -11.23885 -10.76338 -10.09475 -9.91811 -9.84363 -9.72632 -8.56473 -6.24209 -0.85531 -0.59612 0.84351 1.19596 1.32372 1.43990 1.45322 1.98939 2.15695 2.20777 2.51705 2.84055 3.04178 3.20951 3.44250 3.66409 3.71899 3.96497 4.08130 4.16654 4.35455 4.48761 4.51590 4.61851 4.74653 4.80949 4.91390 5.15140 5.19580 5.32179 5.61264 5.94998 6.12847 6.23696 6.54870 6.82669 7.06927 7.23080 7.60085 8.55363 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.018634 B = 0.007731 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.262094 B = 3620.681555 C = 4803.342494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.467 5.467 3 C -0.358 4.358 4 H 0.077 0.923 5 C 0.043 3.957 6 N -0.882 5.882 7 Si 0.926 3.074 8 H -0.257 1.257 9 H -0.277 1.277 10 H -0.267 1.267 11 C 0.528 3.472 12 O -0.601 6.601 13 C -0.202 4.202 14 C 0.042 3.958 15 C -0.187 4.187 16 C -0.032 4.032 17 C -0.171 4.171 18 C 0.173 3.827 19 N -0.513 5.513 20 C 0.315 3.685 21 N -0.526 5.526 22 C 0.399 3.601 23 O -0.479 6.479 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.285 0.715 28 H 0.166 0.834 29 H 0.166 0.834 30 H 0.193 0.807 31 H 0.212 0.788 32 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.832 -1.774 -5.551 10.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.187 5.187 3 C -0.485 4.485 4 H 0.095 0.905 5 C -0.164 4.164 6 N -0.517 5.517 7 Si 0.751 3.249 8 H -0.183 1.183 9 H -0.203 1.203 10 H -0.191 1.191 11 C 0.317 3.683 12 O -0.487 6.487 13 C -0.209 4.209 14 C 0.016 3.984 15 C -0.192 4.192 16 C -0.058 4.058 17 C -0.190 4.190 18 C -0.001 4.001 19 N -0.224 5.224 20 C 0.077 3.923 21 N -0.248 5.248 22 C 0.203 3.797 23 O -0.289 6.289 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.183 0.817 29 H 0.184 0.816 30 H 0.210 0.790 31 H 0.228 0.772 32 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 9.126 -2.926 -4.058 10.407 hybrid contribution -1.611 0.877 -1.487 2.362 sum 7.514 -2.048 -5.545 9.561 Atomic orbital electron populations 1.21941 0.80910 1.01859 1.02430 1.43565 1.05477 1.05178 1.64440 1.18861 1.13554 0.88661 1.27442 0.90529 1.25825 0.97933 0.94010 0.98662 1.69786 1.44418 0.99360 1.38165 0.86139 0.79984 0.78900 0.79905 1.18295 1.20252 1.19097 1.18020 0.86496 0.83861 0.79880 1.90600 1.70124 1.32123 1.55871 1.20949 0.95384 1.01727 1.02819 1.22416 0.91455 0.91560 0.93006 1.19815 0.95080 1.01155 1.03152 1.21940 0.94129 0.94859 0.94886 1.22438 0.95638 1.00735 1.00232 1.23972 1.01467 0.87037 0.87661 1.67652 1.02273 1.27107 1.25346 1.19185 0.91045 0.90380 0.91732 1.66831 1.04855 1.27647 1.25470 1.19075 0.85415 0.89152 0.86069 1.84559 1.68830 1.30876 1.44621 0.91877 0.91419 0.91075 0.90487 0.81653 0.81603 0.78993 0.77186 0.71519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.94 8.99 127.77 1.15 4.09 16 2 N -0.47 -22.06 2.51 -662.65 -1.67 -23.73 16 3 C -0.36 -17.72 6.94 84.10 0.58 -17.13 16 4 H 0.08 4.17 6.76 -2.91 -0.02 4.15 16 5 C 0.04 2.04 5.29 84.96 0.45 2.49 16 6 N -0.88 -44.57 13.95 21.68 0.30 -44.27 16 7 Si 0.93 37.76 25.10 68.60 1.72 39.48 16 8 H -0.26 -9.92 6.67 99.48 0.66 -9.26 16 9 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 C 0.53 24.96 7.05 86.66 0.61 25.57 16 12 O -0.60 -29.41 15.91 9.59 0.15 -29.26 16 13 C -0.20 -8.82 5.28 -19.91 -0.11 -8.92 16 14 C 0.04 1.66 7.69 23.00 0.18 1.84 16 15 C -0.19 -6.50 5.74 -21.25 -0.12 -6.62 16 16 C -0.03 -0.79 9.89 22.52 0.22 -0.57 16 17 C -0.17 -3.02 10.03 22.14 0.22 -2.80 16 18 C 0.17 3.60 11.14 85.01 0.95 4.54 16 19 N -0.51 -16.78 10.43 -193.70 -2.02 -18.80 16 20 C 0.31 12.03 7.61 135.03 1.03 13.05 16 21 N -0.53 -22.22 10.42 -306.52 -3.19 -25.41 16 22 C 0.40 16.89 7.71 85.51 0.66 17.55 16 23 O -0.48 -18.82 12.39 -72.84 -0.90 -19.72 16 24 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.07 2.73 3.81 -2.39 -0.01 2.73 16 26 H 0.07 2.82 7.52 -2.39 -0.02 2.80 16 27 H 0.28 13.28 8.31 -92.71 -0.77 12.51 16 28 H 0.17 6.56 6.43 -2.91 -0.02 6.54 16 29 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.21 2.23 8.06 -2.91 -0.02 2.20 16 32 H 0.42 12.77 9.06 -74.05 -0.67 12.10 16 Total: -1.00 -68.92 279.16 0.70 -68.23 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.48 Total: 20.39 kcal Atomic # 6 Polarization: 27.27 SS G_CDS: 5.82 Total: 33.09 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -6.58 Total: -112.21 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -0.75 Total: -48.98 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 1.72 Total: 39.48 kcal Total: -68.92 0.70 -68.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153744094.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.360 kcal (2) G-P(sol) polarization free energy of solvation -68.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds