Wall clock time and date at job start Mon Mar 30 2020 01:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36944 * 120.00016 * 2 1 4 4 H 1.08003 * 119.99970 * 141.08410 * 3 2 1 5 5 C 1.38991 * 120.00409 * 321.08512 * 3 2 1 6 6 N 1.31402 * 120.00342 * 159.54198 * 5 3 2 7 7 Si 1.86801 * 119.99652 * 339.54310 * 5 3 2 8 8 H 1.48501 * 109.47229 * 94.91135 * 7 5 3 9 9 H 1.48497 * 109.47539 * 214.91162 * 7 5 3 10 10 H 1.48503 * 109.47135 * 334.91342 * 7 5 3 11 11 C 1.34777 * 119.99907 * 180.02562 * 2 1 3 12 12 O 1.21667 * 119.99866 * 184.51851 * 11 2 1 13 13 C 1.47084 * 120.00405 * 4.52369 * 11 2 1 14 14 C 1.38074 * 120.52086 * 310.42976 * 13 11 2 15 15 N 1.33959 * 122.07765 * 179.69903 * 14 13 11 16 16 H 0.96996 * 118.60692 * 180.30130 * 15 14 13 17 17 C 1.37600 * 122.78782 * 0.27293 * 15 14 13 18 18 C 1.39754 * 120.66824 * 180.02562 * 17 15 14 19 19 C 1.38059 * 118.28718 * 179.97438 * 18 17 15 20 20 C 1.38958 * 119.67047 * 359.97438 * 19 18 17 21 21 N 1.31389 * 121.16861 * 359.97438 * 20 19 18 22 22 C 1.32742 * 121.43635 * 0.03825 * 21 20 19 23 23 C 1.47043 * 120.53060 * 130.68000 * 13 11 2 24 24 O 1.21849 * 121.38208 * 0.02562 * 23 13 11 25 25 H 1.09000 * 109.47336 * 266.00893 * 1 2 3 26 26 H 1.08999 * 109.47279 * 26.00889 * 1 2 3 27 27 H 1.09007 * 109.47182 * 146.00454 * 1 2 3 28 28 H 0.97000 * 119.99876 * 180.02562 * 6 5 3 29 29 H 1.07999 * 118.96296 * 359.97209 * 14 13 11 30 30 H 1.07995 * 120.86103 * 359.95716 * 18 17 15 31 31 H 1.08003 * 120.16609 * 179.97438 * 19 18 17 32 32 H 1.07999 * 119.41788 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0499 1.2897 0.5876 5 6 1.6861 2.2562 -0.7561 6 7 2.0715 3.4792 -0.4692 7 14 0.5152 1.9558 -2.1802 8 1 -0.8843 2.1335 -1.7164 9 1 0.8022 2.9232 -3.2697 10 1 0.6967 0.5716 -2.6868 11 6 2.1388 -1.1672 -0.0005 12 8 3.3526 -1.1689 0.0825 13 6 1.4069 -2.4390 -0.1016 14 6 0.3291 -2.6952 0.7226 15 7 -0.3632 -3.8399 0.6533 16 1 -1.1146 -3.9653 1.2537 17 6 -0.0540 -4.8452 -0.2339 18 6 -0.8071 -6.0219 -0.2687 19 6 -0.4539 -6.9982 -1.1787 20 6 0.6269 -6.7893 -2.0267 21 7 1.3227 -5.6757 -1.9801 22 6 1.0229 -4.7075 -1.1228 23 6 1.8147 -3.4600 -1.0780 24 8 2.7620 -3.2825 -1.8235 25 1 -0.3634 -0.0715 1.0252 26 1 -0.3634 0.9236 -0.4506 27 1 -0.3634 -0.8521 -0.5746 28 1 1.7477 4.2260 -0.9966 29 1 0.0322 -1.9473 1.4429 30 1 -1.6437 -6.1641 0.3993 31 1 -1.0147 -7.9196 -1.2313 32 1 0.9000 -7.5559 -2.7368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153855475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:35 Heat of formation + Delta-G solvation = 15.460916 kcal Electronic energy + Delta-G solvation = -20519.762782 eV Core-core repulsion = 17253.897489 eV Total energy + Delta-G solvation = -3265.865292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36766 -39.03881 -37.82275 -37.55689 -34.70056 -32.99005 -32.14391 -31.04045 -30.45433 -26.58327 -25.66403 -24.68248 -23.95940 -22.58296 -20.53134 -18.79674 -18.07115 -17.90203 -17.07366 -16.09513 -15.92555 -15.58342 -15.38535 -15.20530 -14.92307 -14.17123 -13.66113 -13.58112 -13.21787 -13.16200 -12.98269 -12.80774 -12.53520 -12.31788 -11.95519 -11.70854 -10.80035 -10.39923 -10.19299 -9.99021 -9.91725 -9.42487 -9.31485 -9.05401 -8.54009 -7.78318 -7.71377 -6.38773 -3.95171 0.49472 0.60955 1.60653 2.61897 2.86764 3.03776 3.25338 3.33661 3.52881 3.84641 4.15825 4.17610 4.21869 4.32757 4.48272 4.56018 4.71348 4.86833 5.00124 5.15351 5.31019 5.38054 5.64184 5.67777 5.80433 5.95320 6.12203 6.18209 6.20277 6.67713 6.81912 7.56247 7.68470 8.11998 8.29640 8.54229 8.97892 9.30924 9.79670 10.72951 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.029746 B = 0.005482 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.088351 B = 5105.994553 C = 5220.020447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.467 5.467 3 C -0.311 4.311 4 H 0.109 0.891 5 C 0.061 3.939 6 N -0.862 5.862 7 Si 0.875 3.125 8 H -0.276 1.276 9 H -0.286 1.286 10 H -0.262 1.262 11 C 0.529 3.471 12 O -0.541 6.541 13 C -0.276 4.276 14 C 0.164 3.836 15 N -0.597 5.597 16 H 0.419 0.581 17 C 0.141 3.859 18 C -0.129 4.129 19 C -0.117 4.117 20 C 0.065 3.935 21 N -0.404 5.404 22 C 0.027 3.973 23 C 0.435 3.565 24 O -0.430 6.430 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.274 0.726 29 H 0.175 0.825 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.060 -19.062 3.059 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.190 5.190 3 C -0.438 4.438 4 H 0.126 0.874 5 C -0.145 4.145 6 N -0.498 5.498 7 Si 0.703 3.297 8 H -0.203 1.203 9 H -0.212 1.212 10 H -0.186 1.186 11 C 0.316 3.684 12 O -0.420 6.420 13 C -0.289 4.289 14 C 0.035 3.965 15 N -0.207 5.207 16 H 0.255 0.745 17 C 0.036 3.964 18 C -0.158 4.158 19 C -0.138 4.138 20 C -0.099 4.099 21 N -0.113 5.113 22 C -0.111 4.111 23 C 0.313 3.687 24 O -0.302 6.302 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.192 0.808 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.093 -18.512 2.052 22.768 hybrid contribution -1.988 -0.247 0.080 2.005 sum -15.082 -18.760 2.132 24.165 Atomic orbital electron populations 1.22110 0.83862 1.01981 1.00386 1.43581 1.03788 1.05421 1.66161 1.19065 1.11473 0.85456 1.27806 0.87375 1.25381 0.97468 0.94815 0.96883 1.69725 1.43773 0.98283 1.38061 0.86985 0.79926 0.79519 0.83307 1.20269 1.21222 1.18611 1.17319 0.86974 0.81985 0.82089 1.90697 1.13307 1.86365 1.51668 1.22318 1.01582 1.00250 1.04710 1.22149 0.90512 0.86934 0.96943 1.40622 1.31334 1.13986 1.34741 0.74500 1.18859 0.95932 0.89670 0.91975 1.21171 1.00825 0.92230 1.01588 1.22168 0.97486 0.99402 0.94735 1.22923 0.92836 0.95079 0.99037 1.67652 1.26499 0.99749 1.17364 1.21652 0.96201 0.97694 0.95544 1.19321 0.83324 0.83293 0.82742 1.90735 1.24232 1.77935 1.37344 0.93154 0.91451 0.92732 0.91521 0.80790 0.83750 0.83832 0.81897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.14 7.71 59.84 0.46 1.60 16 2 N -0.47 -11.58 2.55 -123.54 -0.32 -11.89 16 3 C -0.31 -9.00 9.37 -14.99 -0.14 -9.14 16 4 H 0.11 3.49 7.90 -52.48 -0.41 3.08 16 5 C 0.06 1.70 5.30 -17.46 -0.09 1.61 16 6 N -0.86 -25.16 13.96 55.50 0.77 -24.39 16 7 Si 0.88 21.11 25.00 -169.99 -4.25 16.86 16 8 H -0.28 -5.99 6.68 56.52 0.38 -5.61 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 11 C 0.53 13.37 6.99 -12.67 -0.09 13.28 16 12 O -0.54 -16.29 16.65 3.51 0.06 -16.23 16 13 C -0.28 -5.46 5.04 -102.80 -0.52 -5.98 16 14 C 0.16 2.10 8.88 -16.68 -0.15 1.95 16 15 N -0.60 -5.43 5.20 -10.37 -0.05 -5.48 16 16 H 0.42 1.73 8.73 -40.82 -0.36 1.38 16 17 C 0.14 1.60 6.67 -83.93 -0.56 1.04 16 18 C -0.13 -0.96 10.01 -39.08 -0.39 -1.35 16 19 C -0.12 -0.85 10.09 -39.38 -0.40 -1.25 16 20 C 0.07 0.68 11.17 -17.47 -0.20 0.49 16 21 N -0.40 -6.42 10.21 -9.58 -0.10 -6.52 16 22 C 0.03 0.44 6.79 -82.77 -0.56 -0.12 16 23 C 0.44 9.27 7.17 -32.09 -0.23 9.04 16 24 O -0.43 -11.15 17.19 3.35 0.06 -11.10 16 25 H 0.05 0.74 7.17 -51.93 -0.37 0.37 16 26 H 0.07 1.37 3.50 -51.93 -0.18 1.19 16 27 H 0.05 0.89 6.21 -51.92 -0.32 0.57 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.18 1.75 6.34 -52.49 -0.33 1.41 16 30 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 31 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 32 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 279.15 15.07 4.21 4.21 Total: -1.00 -40.78 279.15 -4.89 -45.67 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -2.41 Total: -2.30 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -2.86 Total: 11.17 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.31 Total: -48.28 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: 0.12 Total: -27.32 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.25 Total: 16.86 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -40.78 -4.89 -45.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153855475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.127 kcal (2) G-P(sol) polarization free energy of solvation -40.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds