Wall clock time and date at job start Mon Mar 30 2020 01:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36944 * 120.00016 * 2 1 4 4 H 1.08003 * 119.99970 * 141.08410 * 3 2 1 5 5 C 1.38991 * 120.00409 * 321.08512 * 3 2 1 6 6 N 1.31402 * 120.00342 * 159.54198 * 5 3 2 7 7 Si 1.86801 * 119.99652 * 339.54310 * 5 3 2 8 8 H 1.48501 * 109.47229 * 94.91135 * 7 5 3 9 9 H 1.48497 * 109.47539 * 214.91162 * 7 5 3 10 10 H 1.48503 * 109.47135 * 334.91342 * 7 5 3 11 11 C 1.34777 * 119.99907 * 180.02562 * 2 1 3 12 12 O 1.21667 * 119.99866 * 184.51851 * 11 2 1 13 13 C 1.47084 * 120.00405 * 4.52369 * 11 2 1 14 14 C 1.38074 * 120.52086 * 310.42976 * 13 11 2 15 15 N 1.33959 * 122.07765 * 179.69903 * 14 13 11 16 16 H 0.96996 * 118.60692 * 180.30130 * 15 14 13 17 17 C 1.37600 * 122.78782 * 0.27293 * 15 14 13 18 18 C 1.39754 * 120.66824 * 180.02562 * 17 15 14 19 19 C 1.38059 * 118.28718 * 179.97438 * 18 17 15 20 20 C 1.38958 * 119.67047 * 359.97438 * 19 18 17 21 21 N 1.31389 * 121.16861 * 359.97438 * 20 19 18 22 22 C 1.32742 * 121.43635 * 0.03825 * 21 20 19 23 23 C 1.47043 * 120.53060 * 130.68000 * 13 11 2 24 24 O 1.21849 * 121.38208 * 0.02562 * 23 13 11 25 25 H 1.09000 * 109.47336 * 266.00893 * 1 2 3 26 26 H 1.08999 * 109.47279 * 26.00889 * 1 2 3 27 27 H 1.09007 * 109.47182 * 146.00454 * 1 2 3 28 28 H 0.97000 * 119.99876 * 180.02562 * 6 5 3 29 29 H 1.07999 * 118.96296 * 359.97209 * 14 13 11 30 30 H 1.07995 * 120.86103 * 359.95716 * 18 17 15 31 31 H 1.08003 * 120.16609 * 179.97438 * 19 18 17 32 32 H 1.07999 * 119.41788 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0499 1.2897 0.5876 5 6 1.6861 2.2562 -0.7561 6 7 2.0715 3.4792 -0.4692 7 14 0.5152 1.9558 -2.1802 8 1 -0.8843 2.1335 -1.7164 9 1 0.8022 2.9232 -3.2697 10 1 0.6967 0.5716 -2.6868 11 6 2.1388 -1.1672 -0.0005 12 8 3.3526 -1.1689 0.0825 13 6 1.4069 -2.4390 -0.1016 14 6 0.3291 -2.6952 0.7226 15 7 -0.3632 -3.8399 0.6533 16 1 -1.1146 -3.9653 1.2537 17 6 -0.0540 -4.8452 -0.2339 18 6 -0.8071 -6.0219 -0.2687 19 6 -0.4539 -6.9982 -1.1787 20 6 0.6269 -6.7893 -2.0267 21 7 1.3227 -5.6757 -1.9801 22 6 1.0229 -4.7075 -1.1228 23 6 1.8147 -3.4600 -1.0780 24 8 2.7620 -3.2825 -1.8235 25 1 -0.3634 -0.0715 1.0252 26 1 -0.3634 0.9236 -0.4506 27 1 -0.3634 -0.8521 -0.5746 28 1 1.7477 4.2260 -0.9966 29 1 0.0322 -1.9473 1.4429 30 1 -1.6437 -6.1641 0.3993 31 1 -1.0147 -7.9196 -1.2313 32 1 0.9000 -7.5559 -2.7368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153855475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:34 Heat of formation + Delta-G solvation = -20.960876 kcal Electronic energy + Delta-G solvation = -20521.342149 eV Core-core repulsion = 17253.897489 eV Total energy + Delta-G solvation = -3267.444660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.40181 -40.59256 -39.08882 -38.95341 -36.68429 -34.36045 -33.75188 -32.18802 -31.60924 -28.26144 -27.32919 -25.69420 -25.30986 -23.65904 -22.01765 -19.84204 -19.39768 -19.13252 -18.96424 -17.63084 -17.22459 -17.16667 -16.59151 -16.38925 -15.94149 -15.82108 -15.46448 -14.63206 -14.56978 -14.50008 -14.25627 -14.13202 -14.05285 -13.75969 -13.44531 -13.41964 -12.74583 -12.28628 -11.91813 -11.19666 -11.10579 -11.03211 -10.65513 -10.33743 -10.25524 -9.70774 -9.00256 -8.53900 -6.16266 -0.42941 -0.36550 0.63121 1.11727 1.29451 1.42135 1.59928 1.72718 2.06388 2.14889 2.61102 2.83809 2.95531 3.01813 3.39494 3.59611 3.67623 3.79380 3.99836 4.22710 4.31306 4.42336 4.46371 4.59532 4.70571 4.77720 4.82947 5.04006 5.38480 5.53441 5.64958 6.02315 6.13359 6.57750 6.68775 6.91391 6.96844 7.24735 7.86415 8.63747 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.029746 B = 0.005482 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.088351 B = 5105.994553 C = 5220.020447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.479 5.479 3 C -0.335 4.335 4 H 0.045 0.955 5 C 0.017 3.983 6 N -0.908 5.908 7 Si 0.945 3.055 8 H -0.219 1.219 9 H -0.289 1.289 10 H -0.280 1.280 11 C 0.526 3.474 12 O -0.617 6.617 13 C -0.354 4.354 14 C 0.246 3.754 15 N -0.555 5.555 16 H 0.454 0.546 17 C 0.134 3.866 18 C -0.097 4.097 19 C -0.096 4.096 20 C 0.067 3.933 21 N -0.470 5.470 22 C -0.012 4.012 23 C 0.414 3.586 24 O -0.527 6.527 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.282 0.718 29 H 0.218 0.782 30 H 0.208 0.792 31 H 0.200 0.800 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.149 -23.143 4.428 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.201 5.201 3 C -0.463 4.463 4 H 0.063 0.937 5 C -0.185 4.185 6 N -0.545 5.545 7 Si 0.769 3.231 8 H -0.143 1.143 9 H -0.216 1.216 10 H -0.206 1.206 11 C 0.317 3.683 12 O -0.502 6.502 13 C -0.366 4.366 14 C 0.110 3.890 15 N -0.166 5.166 16 H 0.298 0.702 17 C 0.029 3.971 18 C -0.124 4.124 19 C -0.116 4.116 20 C -0.098 4.098 21 N -0.180 5.180 22 C -0.146 4.146 23 C 0.299 3.701 24 O -0.408 6.408 25 H 0.120 0.880 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.234 0.766 30 H 0.225 0.775 31 H 0.217 0.783 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -20.336 -22.645 3.491 30.635 hybrid contribution 0.066 0.634 -0.226 0.676 sum -20.270 -22.011 3.265 30.100 Atomic orbital electron populations 1.22437 0.79756 1.02677 1.04117 1.43664 1.06277 1.03825 1.66314 1.18662 1.10913 0.88058 1.28623 0.93684 1.26087 0.99731 0.93955 0.98775 1.69826 1.45938 0.99309 1.39434 0.85918 0.80541 0.77844 0.78832 1.14283 1.21595 1.20582 1.18149 0.86522 0.83997 0.79642 1.90616 1.17077 1.87925 1.54573 1.21516 1.06249 0.98727 1.10158 1.22426 0.86077 0.87658 0.92847 1.40717 1.30529 1.11881 1.33471 0.70237 1.18976 0.95187 0.91602 0.91340 1.21903 1.00350 0.89219 1.00952 1.22799 0.95510 1.01049 0.92213 1.23638 0.92953 0.93569 0.99606 1.67493 1.29478 1.01723 1.19265 1.21077 0.98217 0.96528 0.98731 1.20159 0.82706 0.85415 0.81773 1.90658 1.28529 1.80207 1.41437 0.87973 0.92483 0.89807 0.90861 0.76583 0.77547 0.78311 0.79525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.81 7.71 127.77 0.99 2.79 16 2 N -0.48 -24.69 2.55 -663.00 -1.69 -26.38 16 3 C -0.33 -20.85 9.37 84.08 0.79 -20.06 16 4 H 0.05 3.27 7.90 -2.91 -0.02 3.25 16 5 C 0.02 1.00 5.30 84.94 0.45 1.45 16 6 N -0.91 -55.59 13.96 21.67 0.30 -55.28 16 7 Si 0.94 44.38 25.00 68.60 1.71 46.10 16 8 H -0.22 -8.32 6.68 99.48 0.66 -7.66 16 9 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 10 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 11 C 0.53 28.60 6.99 86.56 0.60 29.21 16 12 O -0.62 -41.57 16.65 -2.61 -0.04 -41.62 16 13 C -0.35 -14.35 5.04 -18.69 -0.09 -14.45 16 14 C 0.25 5.29 8.88 84.33 0.75 6.04 16 15 N -0.56 -6.38 5.20 -186.71 -0.97 -7.36 16 16 H 0.45 -0.60 8.73 -92.71 -0.81 -1.40 16 17 C 0.13 2.34 6.67 39.11 0.26 2.60 16 18 C -0.10 -0.61 10.01 22.59 0.23 -0.39 16 19 C -0.10 -0.67 10.09 22.40 0.23 -0.44 16 20 C 0.07 1.17 11.17 84.93 0.95 2.12 16 21 N -0.47 -14.95 10.21 -184.21 -1.88 -16.83 16 22 C -0.01 -0.38 6.79 42.05 0.29 -0.09 16 23 C 0.41 18.95 7.17 27.12 0.19 19.15 16 24 O -0.53 -30.96 17.19 -3.20 -0.05 -31.01 16 25 H 0.10 2.49 7.17 -2.39 -0.02 2.47 16 26 H 0.06 2.14 3.50 -2.39 -0.01 2.13 16 27 H 0.08 2.43 6.21 -2.38 -0.01 2.41 16 28 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.22 2.92 6.34 -2.91 -0.02 2.90 16 30 H 0.21 -1.08 8.06 -2.91 -0.02 -1.11 16 31 H 0.20 -0.63 8.06 -2.91 -0.02 -0.66 16 32 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -114.64 279.15 3.34 -111.29 By element: Atomic # 1 Polarization: -7.19 SS G_CDS: 0.35 Total: -6.84 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 5.62 Total: 27.93 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.24 Total: -105.85 kcal Atomic # 8 Polarization: -72.53 SS G_CDS: -0.10 Total: -72.63 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.71 Total: 46.10 kcal Total: -114.64 3.34 -111.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153855475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.331 kcal (2) G-P(sol) polarization free energy of solvation -114.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -111.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds