Wall clock time and date at job start Mon Mar 30 2020 01:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34695 * 117.00046 * 2 1 4 4 O 1.21453 * 119.99854 * 0.02562 * 3 2 1 5 5 C 1.47857 * 119.99899 * 179.97438 * 3 2 1 6 6 C 1.40433 * 119.72955 * 359.97438 * 5 3 2 7 7 C 1.36122 * 120.76643 * 179.97438 * 6 5 3 8 8 C 1.39991 * 119.87444 * 0.02562 * 7 6 5 9 9 C 1.41665 * 120.02664 * 0.02562 * 8 7 6 10 10 C 1.38681 * 119.72458 * 180.02562 * 5 3 2 11 11 N 1.34143 * 118.73195 * 179.97438 * 9 8 7 12 12 C 1.31228 * 120.50388 * 0.02562 * 11 9 8 13 13 N 1.32272 * 122.96523 * 359.71713 * 12 11 9 14 14 C 1.32696 * 121.49802 * 0.57858 * 13 12 11 15 15 N 1.37805 * 120.89327 * 179.71350 * 14 13 12 16 16 C 1.36770 * 120.00235 * 359.71801 * 15 14 13 17 17 H 1.08002 * 120.00375 * 0.02562 * 16 15 14 18 18 C 1.38970 * 119.99650 * 179.72456 * 16 15 14 19 19 N 1.31434 * 120.00308 * 0.27924 * 18 16 15 20 20 Si 1.86803 * 119.99771 * 180.28101 * 18 16 15 21 21 H 1.48504 * 109.47384 * 60.00088 * 20 18 16 22 22 H 1.48498 * 109.47326 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 299.99989 * 20 18 16 24 24 H 1.09007 * 109.47422 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47327 * 299.99710 * 1 2 3 26 26 H 1.08997 * 109.47013 * 60.00408 * 1 2 3 27 27 H 1.08000 * 119.61755 * 0.02562 * 6 5 3 28 28 H 1.07992 * 120.06346 * 179.97438 * 7 6 5 29 29 H 1.07997 * 120.32213 * 0.02562 * 10 5 3 30 30 H 1.07996 * 118.50992 * 179.97438 * 12 11 9 31 31 H 0.97001 * 119.99405 * 179.72767 * 15 14 13 32 32 H 0.96996 * 120.00346 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4020 2.2187 0.0005 5 6 3.5400 1.2775 0.0006 6 6 4.2993 0.0961 0.0017 7 6 5.6597 0.1427 0.0017 8 6 6.3150 1.3797 0.0012 9 6 5.5631 2.5803 0.0011 10 6 4.1637 2.5161 0.0011 11 7 6.2176 3.7512 0.0012 12 6 7.5296 3.7809 0.0007 13 7 8.2742 2.6877 0.0056 14 6 7.7295 1.4777 0.0000 15 7 8.5173 0.3471 -0.0006 16 6 9.8801 0.4631 -0.0013 17 1 10.3388 1.4408 -0.0009 18 6 10.6744 -0.6772 0.0039 19 7 10.1162 -1.8671 0.0038 20 14 12.5357 -0.5187 0.0109 21 1 12.9649 0.2229 1.2238 22 1 13.1477 -1.8717 0.0150 23 1 12.9743 0.2186 -1.2013 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.7980 -0.8605 0.0017 28 1 6.2324 -0.7729 0.0029 29 1 3.5763 3.4224 0.0015 30 1 8.0234 4.7413 0.0003 31 1 8.1052 -0.5310 -0.0007 32 1 10.6706 -2.6629 0.0070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531010.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:59 Heat of formation + Delta-G solvation = -35.211790 kcal Electronic energy + Delta-G solvation = -19679.245650 eV Core-core repulsion = 16411.183024 eV Total energy + Delta-G solvation = -3268.062626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03496 -41.29394 -38.45539 -37.76681 -37.44957 -34.78144 -32.91926 -32.37319 -30.70938 -28.85807 -27.28382 -25.54907 -25.14071 -22.79722 -22.36633 -20.52064 -20.11753 -18.52058 -18.23664 -18.08207 -17.40048 -17.22245 -16.61497 -15.99848 -15.80898 -15.59236 -15.13025 -14.70887 -14.52090 -14.41253 -13.78785 -13.69280 -13.65040 -13.14205 -12.93415 -12.76350 -12.65020 -12.61749 -12.13755 -11.81162 -11.73612 -11.31428 -11.24212 -10.40072 -10.18194 -9.67603 -8.87002 -8.82068 -5.99679 -0.73273 -0.12391 0.97023 1.29591 1.42568 1.53460 1.53665 1.61111 2.13795 2.30086 2.72271 2.84241 3.46642 3.54891 3.57870 3.76492 3.81011 4.03912 4.21431 4.31445 4.37201 4.38479 4.59260 4.73554 4.84135 4.99459 5.17701 5.19171 5.21439 5.29697 5.44120 5.60112 5.97093 6.34426 6.59325 6.61911 6.96410 7.17956 7.88012 8.31294 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.028581 B = 0.004332 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.431507 B = 6461.759431 C = 7426.040761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.519 3.481 4 O -0.530 6.530 5 C -0.091 4.091 6 C -0.106 4.106 7 C -0.081 4.081 8 C -0.183 4.183 9 C 0.171 3.829 10 C -0.071 4.071 11 N -0.632 5.632 12 C 0.349 3.651 13 N -0.638 5.638 14 C 0.343 3.657 15 N -0.476 5.476 16 C -0.305 4.305 17 H 0.116 0.884 18 C -0.005 4.005 19 N -0.886 5.886 20 Si 1.009 2.991 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.264 1.264 24 H 0.137 0.863 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.164 0.836 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.207 0.793 31 H 0.411 0.589 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.786 -2.165 -0.009 10.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.365 3.635 4 O -0.421 6.421 5 C -0.095 4.095 6 C -0.126 4.126 7 C -0.101 4.101 8 C -0.192 4.192 9 C 0.047 3.953 10 C -0.092 4.092 11 N -0.361 5.361 12 C 0.057 3.943 13 N -0.373 5.373 14 C 0.089 3.911 15 N -0.079 5.079 16 C -0.438 4.438 17 H 0.133 0.867 18 C -0.211 4.211 19 N -0.520 5.520 20 Si 0.830 3.170 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.188 1.188 24 H 0.155 0.845 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.182 0.818 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.223 0.777 31 H 0.249 0.751 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.326 -1.419 -0.001 9.433 hybrid contribution 0.132 -0.956 0.004 0.965 sum -9.194 -2.375 0.003 9.496 Atomic orbital electron populations 1.23652 0.73979 1.06107 1.02795 1.86544 1.25456 1.31044 1.83633 1.21132 0.88760 0.81704 0.71916 1.90801 1.67182 1.37005 1.47138 1.19032 0.89250 0.94534 1.06662 1.20940 0.92700 0.98183 1.00746 1.20784 0.95231 0.95824 0.98280 1.19250 0.93379 0.96731 1.09865 1.18668 0.93783 0.88431 0.94415 1.20849 0.91504 0.97445 0.99452 1.68752 1.10632 1.26198 1.30559 1.24788 0.86409 0.96545 0.86537 1.67813 1.40852 0.97456 1.31160 1.18580 0.86719 0.88102 0.97729 1.40987 1.06415 1.05146 1.55344 1.20389 0.80616 0.96280 1.46496 0.86669 1.26483 1.06506 0.93611 0.94512 1.69636 1.40004 0.98903 1.43430 0.84721 0.74290 0.78233 0.79745 1.18865 1.19406 1.18849 0.84463 0.91703 0.91694 0.81828 0.84582 0.84130 0.77690 0.75071 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.63 16 2 O -0.35 -8.35 9.77 -56.05 -0.55 -8.89 16 3 C 0.52 15.55 7.89 70.37 0.56 16.10 16 4 O -0.53 -18.08 16.09 19.99 0.32 -17.76 16 5 C -0.09 -2.96 5.87 -20.09 -0.12 -3.08 16 6 C -0.11 -3.17 9.52 22.31 0.21 -2.95 16 7 C -0.08 -2.79 9.51 22.20 0.21 -2.58 16 8 C -0.18 -7.61 5.76 -21.13 -0.12 -7.73 16 9 C 0.17 7.13 6.61 40.08 0.26 7.40 16 10 C -0.07 -2.63 9.59 22.82 0.22 -2.41 16 11 N -0.63 -26.78 10.44 -193.98 -2.03 -28.81 16 12 C 0.35 14.29 12.22 180.91 2.21 16.50 16 13 N -0.64 -29.37 9.22 -196.65 -1.81 -31.18 16 14 C 0.34 15.78 7.50 134.04 1.01 16.79 16 15 N -0.48 -22.15 5.33 -187.79 -1.00 -23.15 16 16 C -0.31 -14.78 9.71 84.10 0.82 -13.96 16 17 H 0.12 5.71 7.12 -2.91 -0.02 5.69 16 18 C 0.00 -0.22 5.50 84.93 0.47 0.25 16 19 N -0.89 -41.11 13.05 21.67 0.28 -40.83 16 20 Si 1.01 36.19 29.55 68.60 2.03 38.22 16 21 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 24 H 0.14 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.16 3.82 7.57 -2.91 -0.02 3.80 16 28 H 0.14 4.36 6.55 -2.91 -0.02 4.34 16 29 H 0.14 5.12 7.62 -2.91 -0.02 5.10 16 30 H 0.21 6.66 8.06 -2.91 -0.02 6.64 16 31 H 0.41 18.30 6.12 -92.71 -0.57 17.74 16 32 H 0.29 12.60 8.31 -92.71 -0.77 11.83 16 Total: -1.00 -58.74 290.79 4.78 -53.95 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.62 Total: 32.50 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 6.92 Total: 25.95 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -4.56 Total: -123.97 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.23 Total: -26.65 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -58.74 4.78 -53.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531010.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.742 kcal (2) G-P(sol) polarization free energy of solvation -58.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds