Wall clock time and date at job start Mon Mar 30 2020 01:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34746 * 117.00201 * 2 1 4 4 O 1.21496 * 119.99827 * 359.97438 * 3 2 1 5 5 C 1.47541 * 119.99915 * 179.97438 * 3 2 1 6 6 C 1.40588 * 119.79861 * 359.97438 * 5 3 2 7 7 C 1.35913 * 120.86927 * 179.41758 * 6 5 3 8 8 C 1.40381 * 119.94521 * 0.88031 * 7 6 5 9 9 N 1.33998 * 121.73697 * 179.13451 * 8 7 6 10 10 C 1.31306 * 120.55636 * 179.97438 * 9 8 7 11 11 N 1.32224 * 123.03035 * 0.02562 * 10 9 8 12 12 C 1.32760 * 121.44675 * 359.97438 * 11 10 9 13 13 N 1.37701 * 120.92702 * 180.02562 * 12 11 10 14 14 C 1.36804 * 119.99473 * 359.72022 * 13 12 11 15 15 H 1.08002 * 119.99846 * 0.27728 * 14 13 12 16 16 C 1.38964 * 119.99697 * 180.27683 * 14 13 12 17 17 N 1.31444 * 120.00067 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99967 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46793 * 60.00092 * 18 16 14 20 20 H 1.48494 * 109.47228 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47130 * 300.00303 * 18 16 14 22 22 C 1.41788 * 119.62792 * 359.41067 * 8 7 6 23 23 C 1.38958 * 119.80109 * 179.97438 * 5 3 2 24 24 H 1.08996 * 109.47271 * 59.99936 * 1 2 3 25 25 H 1.08999 * 109.47550 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47048 * 300.00424 * 1 2 3 27 27 H 1.07997 * 119.56578 * 0.02562 * 6 5 3 28 28 H 1.07997 * 120.02549 * 180.02562 * 7 6 5 29 29 H 1.07998 * 118.48642 * 179.97438 * 10 9 8 30 30 H 0.97001 * 120.00610 * 180.02562 * 13 12 11 31 31 H 0.96999 * 119.99845 * 180.02562 * 17 16 14 32 32 H 1.08009 * 120.35356 * 0.02562 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2195 -0.0005 5 6 3.5372 1.2777 0.0006 6 6 4.2987 0.0959 0.0017 7 6 5.6570 0.1416 -0.0097 8 6 6.3165 1.3808 -0.0040 9 7 7.6537 1.4675 0.0025 10 6 8.2466 2.6391 0.0073 11 7 7.5830 3.7827 0.0065 12 6 6.2557 3.8134 0.0003 13 7 5.5755 5.0106 -0.0009 14 6 6.2677 6.1905 0.0100 15 1 7.3476 6.1830 0.0152 16 6 5.5811 7.3987 0.0146 17 7 4.2667 7.4078 0.0089 18 14 6.5263 9.0100 0.0289 19 1 7.3858 9.0903 -1.1794 20 1 5.5691 10.1453 0.0324 21 1 7.3753 9.0751 1.2455 22 6 5.5579 2.5786 0.0009 23 6 4.1638 2.5180 0.0000 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.7977 -0.8608 0.0017 28 1 6.2285 -0.7748 -0.0091 29 1 9.3261 2.6701 0.0128 30 1 4.6055 5.0174 -0.0051 31 1 3.7876 8.2512 0.0117 32 1 3.5780 3.4254 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155531119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:53 Heat of formation + Delta-G solvation = -23.775893 kcal Electronic energy + Delta-G solvation = -19884.754831 eV Core-core repulsion = 16617.188103 eV Total energy + Delta-G solvation = -3267.566728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45982 -39.76757 -36.90304 -36.31583 -35.86521 -33.19984 -31.36081 -30.60035 -29.49344 -27.56214 -25.63456 -24.36822 -23.06669 -21.58129 -20.73975 -18.92423 -18.40371 -17.55695 -16.86688 -16.38944 -16.08071 -15.16002 -15.07793 -14.45731 -14.16704 -14.04228 -13.90508 -13.27973 -13.15265 -13.09416 -12.48579 -12.13419 -12.10907 -11.99075 -11.40159 -11.21859 -11.06534 -10.92008 -10.72593 -10.62896 -10.26601 -9.74005 -9.67168 -8.81111 -8.60871 -8.02076 -7.29027 -7.25841 -4.30394 0.91595 1.46680 2.46631 2.83855 2.89316 2.93256 2.98029 3.05023 3.60021 3.85307 4.31841 4.45547 5.06192 5.10462 5.10903 5.17686 5.20403 5.23734 5.33793 5.55298 5.55751 5.72321 5.94789 6.21689 6.39633 6.44351 6.60618 6.73461 6.78660 6.80442 7.02350 7.16773 7.58369 7.94454 8.10420 8.19412 8.57295 8.76895 9.49073 9.84728 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.005695 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.369283 B = 4915.813101 C = 6537.013738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.513 3.487 4 O -0.521 6.521 5 C -0.204 4.204 6 C -0.028 4.028 7 C -0.163 4.163 8 C 0.248 3.752 9 N -0.633 5.633 10 C 0.357 3.643 11 N -0.607 5.607 12 C 0.337 3.663 13 N -0.453 5.453 14 C -0.269 4.269 15 H 0.132 0.868 16 C 0.025 3.975 17 N -0.845 5.845 18 Si 0.953 3.047 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.262 1.262 22 C -0.210 4.210 23 C 0.007 3.993 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.174 0.826 30 H 0.413 0.587 31 H 0.293 0.707 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 -7.693 -0.004 8.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.277 6.277 3 C 0.361 3.639 4 O -0.411 6.411 5 C -0.208 4.208 6 C -0.049 4.049 7 C -0.185 4.185 8 C 0.117 3.883 9 N -0.362 5.362 10 C 0.064 3.936 11 N -0.338 5.338 12 C 0.083 3.917 13 N -0.051 5.051 14 C -0.402 4.402 15 H 0.149 0.851 16 C -0.186 4.186 17 N -0.476 5.476 18 Si 0.777 3.223 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.187 1.187 22 C -0.219 4.219 23 C -0.015 4.015 24 H 0.079 0.921 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.191 0.809 30 H 0.251 0.749 31 H 0.103 0.897 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.483 -6.819 -0.001 7.257 hybrid contribution -1.344 0.878 0.002 1.606 sum -3.828 -5.941 0.001 7.067 Atomic orbital electron populations 1.23176 0.76948 1.03129 1.02393 1.86545 1.22785 1.33358 1.85007 1.21276 0.89295 0.80973 0.72404 1.90818 1.66929 1.35972 1.47423 1.18445 0.88022 0.94524 1.19823 1.20814 0.93528 0.96983 0.93564 1.20300 0.93369 0.96230 1.08551 1.18829 0.90001 0.91598 0.87865 1.68771 1.08158 1.28012 1.31260 1.24194 0.99661 0.82696 0.87007 1.67769 1.06398 1.30543 1.29087 1.18074 0.89090 0.84340 1.00167 1.41189 1.09387 1.03093 1.51381 1.20514 0.94967 0.81440 1.43278 0.85069 1.25898 0.96022 1.01625 0.95072 1.69622 1.06968 1.30898 1.40150 0.85520 0.78920 0.77703 0.80179 1.18671 1.20086 1.18674 1.18682 0.93850 0.94900 1.14486 1.20965 0.92871 0.96638 0.91032 0.92142 0.88445 0.92150 0.85309 0.85139 0.80940 0.74884 0.89657 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.57 101.05 1.07 1.48 16 2 O -0.36 -5.32 9.77 -40.62 -0.40 -5.72 16 3 C 0.51 9.17 7.89 34.52 0.27 9.45 16 4 O -0.52 -10.60 16.10 -19.26 -0.31 -10.91 16 5 C -0.20 -3.74 5.87 -104.95 -0.62 -4.36 16 6 C -0.03 -0.46 9.51 -39.53 -0.38 -0.83 16 7 C -0.16 -2.84 9.97 -39.61 -0.40 -3.24 16 8 C 0.25 5.12 6.62 -84.76 -0.56 4.56 16 9 N -0.63 -13.11 10.44 -12.58 -0.13 -13.24 16 10 C 0.36 7.21 12.22 -92.20 -1.13 6.08 16 11 N -0.61 -13.72 9.22 -13.50 -0.12 -13.85 16 12 C 0.34 7.78 7.50 -154.93 -1.16 6.62 16 13 N -0.45 -10.64 5.33 -10.70 -0.06 -10.70 16 14 C -0.27 -6.38 9.71 -15.06 -0.15 -6.53 16 15 H 0.13 3.12 7.12 -52.49 -0.37 2.74 16 16 C 0.03 0.57 5.50 -17.45 -0.10 0.47 16 17 N -0.85 -19.96 13.05 55.50 0.72 -19.23 16 18 Si 0.95 17.58 29.55 -169.99 -5.02 12.56 16 19 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 20 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 C -0.21 -4.52 5.75 -106.68 -0.61 -5.14 16 23 C 0.01 0.14 9.11 -38.83 -0.35 -0.21 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.13 1.71 7.57 -52.49 -0.40 1.31 16 28 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 29 H 0.17 2.80 8.06 -52.49 -0.42 2.37 16 30 H 0.41 9.60 6.14 -40.82 -0.25 9.35 16 31 H 0.29 6.42 8.31 -40.82 -0.34 6.08 16 32 H 0.13 2.62 6.14 -52.48 -0.32 2.30 16 LS Contribution 290.81 15.07 4.38 4.38 Total: -1.00 -27.60 290.81 -7.64 -35.23 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -2.59 Total: 13.13 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -4.11 Total: 8.35 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.41 Total: -57.02 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.71 Total: -16.63 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.02 Total: 12.56 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.60 -7.64 -35.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.455 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds