Wall clock time and date at job start Mon Mar 30 2020 01:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34746 * 117.00201 * 2 1 4 4 O 1.21496 * 119.99827 * 359.97438 * 3 2 1 5 5 C 1.47541 * 119.99915 * 179.97438 * 3 2 1 6 6 C 1.40588 * 119.79861 * 359.97438 * 5 3 2 7 7 C 1.35913 * 120.86927 * 179.41758 * 6 5 3 8 8 C 1.40381 * 119.94521 * 0.88031 * 7 6 5 9 9 N 1.33998 * 121.73697 * 179.13451 * 8 7 6 10 10 C 1.31306 * 120.55636 * 179.97438 * 9 8 7 11 11 N 1.32224 * 123.03035 * 0.02562 * 10 9 8 12 12 C 1.32760 * 121.44675 * 359.97438 * 11 10 9 13 13 N 1.37701 * 120.92702 * 180.02562 * 12 11 10 14 14 C 1.36804 * 119.99473 * 359.72022 * 13 12 11 15 15 H 1.08002 * 119.99846 * 0.27728 * 14 13 12 16 16 C 1.38964 * 119.99697 * 180.27683 * 14 13 12 17 17 N 1.31444 * 120.00067 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99967 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46793 * 60.00092 * 18 16 14 20 20 H 1.48494 * 109.47228 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47130 * 300.00303 * 18 16 14 22 22 C 1.41788 * 119.62792 * 359.41067 * 8 7 6 23 23 C 1.38958 * 119.80109 * 179.97438 * 5 3 2 24 24 H 1.08996 * 109.47271 * 59.99936 * 1 2 3 25 25 H 1.08999 * 109.47550 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47048 * 300.00424 * 1 2 3 27 27 H 1.07997 * 119.56578 * 0.02562 * 6 5 3 28 28 H 1.07997 * 120.02549 * 180.02562 * 7 6 5 29 29 H 1.07998 * 118.48642 * 179.97438 * 10 9 8 30 30 H 0.97001 * 120.00610 * 180.02562 * 13 12 11 31 31 H 0.96999 * 119.99845 * 180.02562 * 17 16 14 32 32 H 1.08009 * 120.35356 * 0.02562 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2195 -0.0005 5 6 3.5372 1.2777 0.0006 6 6 4.2987 0.0959 0.0017 7 6 5.6570 0.1416 -0.0097 8 6 6.3165 1.3808 -0.0040 9 7 7.6537 1.4675 0.0025 10 6 8.2466 2.6391 0.0073 11 7 7.5830 3.7827 0.0065 12 6 6.2557 3.8134 0.0003 13 7 5.5755 5.0106 -0.0009 14 6 6.2677 6.1905 0.0100 15 1 7.3476 6.1830 0.0152 16 6 5.5811 7.3987 0.0146 17 7 4.2667 7.4078 0.0089 18 14 6.5263 9.0100 0.0289 19 1 7.3858 9.0903 -1.1794 20 1 5.5691 10.1453 0.0324 21 1 7.3753 9.0751 1.2455 22 6 5.5579 2.5786 0.0009 23 6 4.1638 2.5180 0.0000 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.7977 -0.8608 0.0017 28 1 6.2285 -0.7748 -0.0091 29 1 9.3261 2.6701 0.0128 30 1 4.6055 5.0174 -0.0051 31 1 3.7876 8.2512 0.0117 32 1 3.5780 3.4254 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:52 Heat of formation + Delta-G solvation = -38.505261 kcal Electronic energy + Delta-G solvation = -19885.393545 eV Core-core repulsion = 16617.188103 eV Total energy + Delta-G solvation = -3268.205441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.02089 -41.21643 -38.45418 -37.85371 -37.32857 -34.84988 -32.99008 -32.15770 -31.04833 -28.67010 -27.29891 -25.86097 -24.65241 -23.09158 -22.24584 -20.57326 -19.91460 -19.06088 -18.38826 -17.85999 -17.34791 -16.69573 -16.63920 -16.04196 -15.82966 -15.57385 -15.35112 -14.67047 -14.59013 -14.39315 -13.88962 -13.75723 -13.68284 -13.06147 -12.92177 -12.83147 -12.61954 -12.41202 -12.16669 -11.79392 -11.76599 -11.35674 -11.29912 -10.45562 -10.14681 -9.70430 -8.90824 -8.89623 -6.08833 -0.64324 -0.07439 0.87069 1.36081 1.37765 1.51145 1.55162 1.71857 2.08533 2.33672 2.64333 2.79610 3.45724 3.57397 3.65825 3.73505 3.82931 3.97718 4.21536 4.35577 4.35788 4.43314 4.67428 4.71640 4.87991 4.98945 5.09381 5.19655 5.28358 5.35492 5.36602 5.66082 5.98822 6.25664 6.52360 6.71707 6.87935 7.07775 7.82165 8.23327 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.005695 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.369283 B = 4915.813101 C = 6537.013738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.517 3.483 4 O -0.551 6.551 5 C -0.195 4.195 6 C -0.012 4.012 7 C -0.149 4.149 8 C 0.221 3.779 9 N -0.629 5.629 10 C 0.354 3.646 11 N -0.633 5.633 12 C 0.343 3.657 13 N -0.475 5.475 14 C -0.305 4.305 15 H 0.123 0.877 16 C -0.010 4.010 17 N -0.887 5.887 18 Si 1.016 2.984 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.260 1.260 22 C -0.232 4.232 23 C -0.004 4.004 24 H 0.059 0.941 25 H 0.141 0.859 26 H 0.059 0.941 27 H 0.172 0.828 28 H 0.162 0.838 29 H 0.211 0.789 30 H 0.407 0.593 31 H 0.294 0.706 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -10.568 0.000 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.365 3.635 4 O -0.443 6.443 5 C -0.199 4.199 6 C -0.033 4.033 7 C -0.169 4.169 8 C 0.092 3.908 9 N -0.358 5.358 10 C 0.062 3.938 11 N -0.366 5.366 12 C 0.088 3.912 13 N -0.074 5.074 14 C -0.437 4.437 15 H 0.140 0.860 16 C -0.216 4.216 17 N -0.520 5.520 18 Si 0.836 3.164 19 H -0.184 1.184 20 H -0.195 1.195 21 H -0.184 1.184 22 C -0.241 4.241 23 C -0.026 4.026 24 H 0.078 0.922 25 H 0.159 0.841 26 H 0.078 0.922 27 H 0.189 0.811 28 H 0.180 0.820 29 H 0.227 0.773 30 H 0.245 0.755 31 H 0.105 0.895 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.576 -9.787 0.002 10.121 hybrid contribution -1.423 1.267 0.000 1.906 sum -3.999 -8.520 0.002 9.412 Atomic orbital electron populations 1.23595 0.74461 1.06007 1.02383 1.86518 1.25055 1.31047 1.84071 1.21183 0.89060 0.81522 0.71708 1.90821 1.67533 1.37334 1.48620 1.18731 0.88970 0.94576 1.17638 1.21198 0.93040 0.97697 0.91331 1.20684 0.93953 0.95958 1.06347 1.19318 0.90195 0.92476 0.88763 1.68843 1.08273 1.28052 1.30593 1.24953 1.01236 0.82021 0.85572 1.67851 1.06370 1.31843 1.30499 1.18543 0.89745 0.84947 0.97918 1.41156 1.08996 1.03271 1.54021 1.20531 0.94705 0.82209 1.46223 0.85960 1.26703 0.96672 1.04043 0.94198 1.69693 1.08157 1.31479 1.42683 0.84620 0.77653 0.74015 0.80067 1.18386 1.19483 1.18404 1.18839 0.94504 0.94904 1.15883 1.20950 0.92544 0.97305 0.91785 0.92226 0.84100 0.92235 0.81071 0.82026 0.77272 0.75515 0.89545 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.57 113.37 1.20 1.73 16 2 O -0.35 -9.12 9.77 -56.57 -0.55 -9.67 16 3 C 0.52 17.51 7.89 70.28 0.55 18.07 16 4 O -0.55 -22.16 16.10 19.85 0.32 -21.84 16 5 C -0.20 -6.80 5.87 -20.08 -0.12 -6.92 16 6 C -0.01 -0.35 9.51 22.30 0.21 -0.14 16 7 C -0.15 -4.62 9.97 22.25 0.22 -4.40 16 8 C 0.22 8.78 6.62 40.21 0.27 9.04 16 9 N -0.63 -24.93 10.44 -193.71 -2.02 -26.95 16 10 C 0.35 13.93 12.22 180.90 2.21 16.14 16 11 N -0.63 -29.06 9.22 -196.62 -1.81 -30.87 16 12 C 0.34 16.36 7.50 134.07 1.01 17.36 16 13 N -0.47 -23.63 5.33 -187.77 -1.00 -24.64 16 14 C -0.30 -15.30 9.71 84.09 0.82 -14.49 16 15 H 0.12 6.14 7.12 -2.91 -0.02 6.12 16 16 C -0.01 -0.47 5.50 84.92 0.47 0.00 16 17 N -0.89 -44.20 13.05 21.67 0.28 -43.92 16 18 Si 1.02 37.24 29.55 68.60 2.03 39.27 16 19 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 20 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 22 C -0.23 -10.08 5.75 -21.20 -0.12 -10.20 16 23 C 0.00 -0.17 9.11 22.76 0.21 0.04 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.17 3.50 7.57 -2.91 -0.02 3.48 16 28 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 29 H 0.21 6.37 8.06 -2.91 -0.02 6.35 16 30 H 0.41 20.43 6.14 -92.71 -0.57 19.87 16 31 H 0.29 13.56 8.31 -92.71 -0.77 12.79 16 32 H 0.11 4.92 6.14 -2.91 -0.02 4.90 16 Total: -1.00 -61.81 290.81 4.78 -57.03 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: 0.62 Total: 35.35 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: 6.92 Total: 26.24 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -4.55 Total: -126.38 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.23 Total: -31.51 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -61.81 4.78 -57.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.529 kcal (2) G-P(sol) polarization free energy of solvation -61.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds