Wall clock time and date at job start Mon Mar 30 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34749 * 116.99824 * 2 1 4 4 O 1.21506 * 119.99969 * 359.97438 * 3 2 1 5 5 C 1.47497 * 120.00091 * 180.02562 * 3 2 1 6 6 C 1.38889 * 120.30485 * 354.28100 * 5 3 2 7 7 C 1.40479 * 117.90807 * 180.02562 * 6 5 3 8 8 C 1.40575 * 122.03363 * 180.02562 * 7 6 5 9 9 C 1.36353 * 118.68037 * 179.97438 * 8 7 6 10 10 N 1.32486 * 121.72291 * 359.74620 * 9 8 7 11 11 C 1.31147 * 122.87710 * 0.53268 * 10 9 8 12 12 C 1.40714 * 120.04587 * 359.47211 * 11 10 9 13 13 N 1.33484 * 121.51676 * 180.27339 * 12 11 10 14 14 C 1.31723 * 121.51583 * 179.97438 * 13 12 11 15 15 N 1.38161 * 119.29214 * 179.97438 * 14 13 12 16 16 C 1.36907 * 120.00478 * 5.53903 * 15 14 13 17 17 H 1.07997 * 119.99296 * 359.97438 * 16 15 14 18 18 C 1.38856 * 120.00231 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00589 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47162 * 90.00141 * 20 18 16 22 22 H 1.48508 * 109.46765 * 209.99775 * 20 18 16 23 23 H 1.48496 * 109.46977 * 329.99681 * 20 18 16 24 24 H 1.09007 * 109.46862 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47182 * 299.99887 * 1 2 3 26 26 H 1.09003 * 109.47219 * 60.00252 * 1 2 3 27 27 H 1.08001 * 121.04159 * 0.03876 * 6 5 3 28 28 H 1.07999 * 120.66123 * 359.97438 * 8 7 6 29 29 H 1.08002 * 119.14027 * 179.97438 * 9 8 7 30 30 H 1.07998 * 119.97962 * 179.75053 * 11 10 9 31 31 H 0.97005 * 119.99872 * 185.53212 * 15 14 13 32 32 H 0.96996 * 120.00517 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5367 1.2779 -0.0006 6 6 4.2991 0.1231 0.1184 7 6 5.6977 0.2550 0.1125 8 6 6.5519 -0.8555 0.2270 9 6 7.8996 -0.6487 0.2130 10 7 8.4169 0.5648 0.0899 11 6 7.6809 1.6451 -0.0160 12 6 6.2773 1.5445 -0.0129 13 7 5.5001 2.6240 -0.1243 14 6 4.1863 2.5297 -0.1219 15 7 3.4260 3.6773 -0.2395 16 6 4.0352 4.8814 -0.4705 17 1 5.1102 4.9342 -0.5604 18 6 3.2711 6.0347 -0.5892 19 7 1.9620 5.9704 -0.4803 20 14 4.1024 7.6775 -0.9052 21 1 4.2171 7.9009 -2.3688 22 1 3.2933 8.7661 -0.3003 23 1 5.4573 7.6716 -0.2976 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.8314 -0.8459 0.2122 28 1 6.1487 -1.8527 0.3242 29 1 8.5627 -1.4966 0.3009 30 1 8.1523 2.6121 -0.1102 31 1 2.4605 3.6299 -0.1585 32 1 1.4282 6.7760 -0.5636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:50 Heat of formation + Delta-G solvation = -9.359588 kcal Electronic energy + Delta-G solvation = -20231.320351 eV Core-core repulsion = 16964.378761 eV Total energy + Delta-G solvation = -3266.941590 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52260 -39.64310 -37.64365 -36.05764 -35.08917 -32.91001 -32.14948 -30.64047 -28.76353 -27.55730 -25.54599 -24.47600 -22.60187 -21.66478 -21.26069 -18.75426 -18.03418 -17.33188 -16.96667 -16.08456 -15.88568 -15.56946 -15.20812 -14.49346 -14.17112 -14.04828 -13.69752 -13.49855 -13.07359 -12.89097 -12.54249 -12.40035 -11.98321 -11.83501 -11.63380 -11.39445 -10.86213 -10.60120 -10.56458 -10.51217 -10.02808 -9.90506 -9.12497 -9.04722 -8.41758 -8.27323 -7.13020 -6.95913 -4.02210 0.69324 1.57235 2.37302 2.94286 2.97755 3.03030 3.08769 3.12244 3.78983 3.80744 4.63350 4.65455 4.99753 5.08942 5.10078 5.18751 5.23281 5.31227 5.40730 5.49875 5.51817 5.69587 5.95555 6.08671 6.21619 6.27475 6.54545 6.63275 6.77253 7.01822 7.10183 7.33745 7.58670 8.08257 8.37825 8.57167 8.78191 8.93267 9.50992 10.14834 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.007642 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.298664 B = 3663.200670 C = 5803.082890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.509 3.491 4 O -0.507 6.507 5 C -0.226 4.226 6 C 0.050 3.950 7 C -0.214 4.214 8 C -0.085 4.085 9 C -0.023 4.023 10 N -0.456 5.456 11 C 0.105 3.895 12 C 0.189 3.811 13 N -0.544 5.544 14 C 0.337 3.663 15 N -0.466 5.466 16 C -0.277 4.277 17 H 0.125 0.875 18 C 0.023 3.977 19 N -0.849 5.849 20 Si 0.946 3.054 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.259 1.259 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.139 0.861 28 H 0.122 0.878 29 H 0.138 0.862 30 H 0.159 0.841 31 H 0.426 0.574 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 -9.500 0.694 9.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.356 3.644 4 O -0.396 6.396 5 C -0.236 4.236 6 C 0.025 3.975 7 C -0.226 4.226 8 C -0.106 4.106 9 C -0.166 4.166 10 N -0.165 5.165 11 C -0.073 4.073 12 C 0.046 3.954 13 N -0.268 5.268 14 C 0.083 3.917 15 N -0.075 5.075 16 C -0.409 4.409 17 H 0.143 0.857 18 C -0.186 4.186 19 N -0.480 5.480 20 Si 0.770 3.230 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.183 1.183 24 H 0.116 0.884 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.157 0.843 28 H 0.140 0.860 29 H 0.155 0.845 30 H 0.176 0.824 31 H 0.277 0.723 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.219 -7.965 0.571 7.989 hybrid contribution -1.826 -0.164 -0.007 1.833 sum -1.607 -8.129 0.563 8.306 Atomic orbital electron populations 1.23209 0.76651 1.03129 1.02690 1.86525 1.23079 1.32947 1.85092 1.21220 0.88883 0.81246 0.73012 1.90593 1.66305 1.35073 1.47650 1.19242 0.88439 0.95113 1.20796 1.21602 0.92261 0.96953 0.86645 1.18345 0.93428 0.95007 1.15792 1.21644 0.94526 0.97608 0.96808 1.21566 0.92890 0.94208 1.07952 1.67138 1.41222 0.99021 1.09117 1.22679 0.88153 0.96900 0.99597 1.19588 0.95075 0.88075 0.92696 1.67472 1.02530 1.29231 1.27577 1.17729 0.88042 0.84541 1.01359 1.42298 1.11219 1.03832 1.50109 1.20446 0.95589 0.83105 1.41791 0.85708 1.25805 0.95493 1.01449 0.95903 1.69754 1.04875 1.31788 1.41627 0.85589 0.79534 0.78675 0.79178 1.19526 1.20248 1.18296 0.88419 0.91968 0.91922 0.84306 0.86015 0.84452 0.82424 0.72341 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.57 101.05 1.07 1.52 16 2 O -0.36 -5.75 9.87 -40.62 -0.40 -6.15 16 3 C 0.51 10.11 7.88 34.50 0.27 10.38 16 4 O -0.51 -11.51 13.41 -19.27 -0.26 -11.76 16 5 C -0.23 -4.69 5.90 -104.62 -0.62 -5.30 16 6 C 0.05 0.88 9.51 -38.50 -0.37 0.52 16 7 C -0.21 -3.95 5.75 -106.76 -0.61 -4.57 16 8 C -0.09 -1.32 9.87 -39.38 -0.39 -1.71 16 9 C -0.02 -0.36 11.08 -17.95 -0.20 -0.56 16 10 N -0.46 -8.22 10.28 -13.08 -0.13 -8.36 16 11 C 0.11 1.99 11.25 -16.91 -0.19 1.80 16 12 C 0.19 3.93 6.62 -84.80 -0.56 3.37 16 13 N -0.54 -12.70 9.01 -9.94 -0.09 -12.79 16 14 C 0.34 8.04 7.44 -155.48 -1.16 6.89 16 15 N -0.47 -12.03 5.28 -10.89 -0.06 -12.09 16 16 C -0.28 -7.18 9.68 -15.06 -0.15 -7.32 16 17 H 0.13 3.20 7.06 -52.49 -0.37 2.83 16 18 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 19 N -0.85 -22.08 13.05 55.49 0.72 -21.36 16 20 Si 0.95 19.05 29.55 -169.99 -5.02 14.02 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 24 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.14 1.94 7.68 -52.49 -0.40 1.54 16 28 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.16 2.73 8.06 -52.49 -0.42 2.31 16 31 H 0.43 11.32 4.31 -41.17 -0.18 11.15 16 32 H 0.29 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 288.77 15.07 4.35 4.35 Total: -1.00 -29.15 288.77 -6.51 -35.65 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -2.62 Total: 13.00 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -3.00 Total: 5.48 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.44 Total: -54.60 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.66 Total: -17.91 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.15 -6.51 -35.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.292 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds