Wall clock time and date at job start Mon Mar 30 2020 01:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34749 * 116.99824 * 2 1 4 4 O 1.21506 * 119.99969 * 359.97438 * 3 2 1 5 5 C 1.47497 * 120.00091 * 180.02562 * 3 2 1 6 6 C 1.38889 * 120.30485 * 354.28100 * 5 3 2 7 7 C 1.40479 * 117.90807 * 180.02562 * 6 5 3 8 8 C 1.40575 * 122.03363 * 180.02562 * 7 6 5 9 9 C 1.36353 * 118.68037 * 179.97438 * 8 7 6 10 10 N 1.32486 * 121.72291 * 359.74620 * 9 8 7 11 11 C 1.31147 * 122.87710 * 0.53268 * 10 9 8 12 12 C 1.40714 * 120.04587 * 359.47211 * 11 10 9 13 13 N 1.33484 * 121.51676 * 180.27339 * 12 11 10 14 14 C 1.31723 * 121.51583 * 179.97438 * 13 12 11 15 15 N 1.38161 * 119.29214 * 179.97438 * 14 13 12 16 16 C 1.36907 * 120.00478 * 5.53903 * 15 14 13 17 17 H 1.07997 * 119.99296 * 359.97438 * 16 15 14 18 18 C 1.38856 * 120.00231 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00589 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47162 * 90.00141 * 20 18 16 22 22 H 1.48508 * 109.46765 * 209.99775 * 20 18 16 23 23 H 1.48496 * 109.46977 * 329.99681 * 20 18 16 24 24 H 1.09007 * 109.46862 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47182 * 299.99887 * 1 2 3 26 26 H 1.09003 * 109.47219 * 60.00252 * 1 2 3 27 27 H 1.08001 * 121.04159 * 0.03876 * 6 5 3 28 28 H 1.07999 * 120.66123 * 359.97438 * 8 7 6 29 29 H 1.08002 * 119.14027 * 179.97438 * 9 8 7 30 30 H 1.07998 * 119.97962 * 179.75053 * 11 10 9 31 31 H 0.97005 * 119.99872 * 185.53212 * 15 14 13 32 32 H 0.96996 * 120.00517 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5367 1.2779 -0.0006 6 6 4.2991 0.1231 0.1184 7 6 5.6977 0.2550 0.1125 8 6 6.5519 -0.8555 0.2270 9 6 7.8996 -0.6487 0.2130 10 7 8.4169 0.5648 0.0899 11 6 7.6809 1.6451 -0.0160 12 6 6.2773 1.5445 -0.0129 13 7 5.5001 2.6240 -0.1243 14 6 4.1863 2.5297 -0.1219 15 7 3.4260 3.6773 -0.2395 16 6 4.0352 4.8814 -0.4705 17 1 5.1102 4.9342 -0.5604 18 6 3.2711 6.0347 -0.5892 19 7 1.9620 5.9704 -0.4803 20 14 4.1024 7.6775 -0.9052 21 1 4.2171 7.9009 -2.3688 22 1 3.2933 8.7661 -0.3003 23 1 5.4573 7.6716 -0.2976 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.8314 -0.8459 0.2122 28 1 6.1487 -1.8527 0.3242 29 1 8.5627 -1.4966 0.3009 30 1 8.1523 2.6121 -0.1102 31 1 2.4605 3.6299 -0.1585 32 1 1.4282 6.7760 -0.5636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:49 Heat of formation + Delta-G solvation = -28.000538 kcal Electronic energy + Delta-G solvation = -20232.128684 eV Core-core repulsion = 16964.378761 eV Total energy + Delta-G solvation = -3267.749922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08246 -41.12690 -39.19855 -37.54568 -36.71158 -34.49385 -33.83720 -32.14370 -30.33931 -28.69857 -27.25591 -25.97026 -24.15745 -23.21641 -22.72430 -20.37737 -19.66017 -18.86296 -18.43390 -17.51343 -17.40242 -16.97316 -16.79215 -16.12060 -15.76617 -15.62891 -15.11791 -14.84747 -14.44172 -14.33237 -14.01154 -13.98548 -13.54021 -13.16277 -12.99927 -12.93775 -12.61662 -12.12923 -12.08553 -11.85413 -11.60854 -11.48499 -10.75803 -10.63627 -10.00183 -9.78665 -8.75624 -8.68077 -5.91544 -0.79628 0.01648 0.89374 1.37323 1.37555 1.52217 1.55079 1.62994 2.18052 2.26049 2.95914 2.96604 3.43979 3.56642 3.68787 3.76937 3.92364 4.01142 4.26951 4.32725 4.33830 4.43498 4.67614 4.68177 4.79664 4.81996 5.07060 5.19023 5.26808 5.31362 5.53836 5.80500 5.91091 6.54467 6.67792 6.96132 7.20254 7.23228 7.77550 8.46389 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.007642 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.298664 B = 3663.200670 C = 5803.082890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.346 6.346 3 C 0.515 3.485 4 O -0.541 6.541 5 C -0.256 4.256 6 C 0.079 3.921 7 C -0.212 4.212 8 C -0.070 4.070 9 C -0.012 4.012 10 N -0.460 5.460 11 C 0.090 3.910 12 C 0.160 3.840 13 N -0.581 5.581 14 C 0.353 3.647 15 N -0.510 5.510 16 C -0.314 4.314 17 H 0.112 0.888 18 C -0.022 4.022 19 N -0.902 5.902 20 Si 1.011 2.989 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.258 1.258 24 H 0.147 0.853 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.191 0.809 28 H 0.177 0.823 29 H 0.181 0.819 30 H 0.160 0.840 31 H 0.419 0.581 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -14.115 1.061 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.363 3.637 4 O -0.433 6.433 5 C -0.266 4.266 6 C 0.055 3.945 7 C -0.223 4.223 8 C -0.090 4.090 9 C -0.156 4.156 10 N -0.169 5.169 11 C -0.086 4.086 12 C 0.023 3.977 13 N -0.308 5.308 14 C 0.100 3.900 15 N -0.124 5.124 16 C -0.446 4.446 17 H 0.130 0.870 18 C -0.225 4.225 19 N -0.538 5.538 20 Si 0.831 3.169 21 H -0.191 1.191 22 H -0.196 1.196 23 H -0.182 1.182 24 H 0.164 0.836 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.208 0.792 28 H 0.194 0.806 29 H 0.198 0.802 30 H 0.177 0.823 31 H 0.267 0.733 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.758 -12.654 0.941 12.810 hybrid contribution -1.934 0.509 -0.039 2.000 sum -0.176 -12.145 0.902 12.180 Atomic orbital electron populations 1.23626 0.74260 1.06160 1.02381 1.86491 1.25212 1.30305 1.84200 1.21108 0.88637 0.81829 0.72084 1.90601 1.66959 1.36604 1.49127 1.19435 0.89681 0.95007 1.22445 1.22120 0.91575 0.97801 0.83039 1.18806 0.94529 0.95112 1.13869 1.22163 0.93787 0.98825 0.94196 1.22433 0.94179 0.94347 1.04651 1.67238 1.41365 0.99702 1.08632 1.22744 0.87622 0.97780 1.00502 1.20045 0.95788 0.88877 0.93026 1.67475 1.02803 1.31157 1.29339 1.18381 0.88605 0.85547 0.97471 1.42268 1.10786 1.04290 1.55046 1.20389 0.95094 0.84254 1.44827 0.87039 1.26606 0.95951 1.04182 0.95733 1.69847 1.06019 1.32265 1.45634 0.84669 0.78379 0.74799 0.79009 1.19076 1.19584 1.18202 0.83558 0.92227 0.92512 0.79238 0.80551 0.80172 0.82254 0.73258 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.57 113.37 1.20 1.83 16 2 O -0.35 -10.13 9.87 -56.59 -0.56 -10.69 16 3 C 0.51 20.28 7.88 70.26 0.55 20.84 16 4 O -0.54 -25.57 13.41 19.82 0.27 -25.31 16 5 C -0.26 -10.43 5.90 -19.86 -0.12 -10.55 16 6 C 0.08 2.46 9.51 22.97 0.22 2.68 16 7 C -0.21 -6.97 5.75 -21.25 -0.12 -7.09 16 8 C -0.07 -1.68 9.87 22.40 0.22 -1.46 16 9 C -0.01 -0.30 11.08 84.15 0.93 0.63 16 10 N -0.46 -14.99 10.28 -195.31 -2.01 -17.00 16 11 C 0.09 3.28 11.25 85.40 0.96 4.24 16 12 C 0.16 6.48 6.62 40.41 0.27 6.75 16 13 N -0.58 -28.03 9.01 -185.36 -1.67 -29.70 16 14 C 0.35 17.51 7.44 134.15 1.00 18.51 16 15 N -0.51 -28.29 5.28 -188.36 -1.00 -29.28 16 16 C -0.31 -17.71 9.68 84.05 0.81 -16.89 16 17 H 0.11 6.25 7.06 -2.91 -0.02 6.23 16 18 C -0.02 -1.18 5.50 84.89 0.47 -0.71 16 19 N -0.90 -50.86 13.05 21.65 0.28 -50.58 16 20 Si 1.01 41.90 29.55 68.60 2.03 43.93 16 21 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H 0.15 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.19 3.97 7.68 -2.91 -0.02 3.95 16 28 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 30 H 0.16 5.61 8.06 -2.91 -0.02 5.58 16 31 H 0.42 24.00 4.31 -98.31 -0.42 23.58 16 32 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -70.51 288.77 4.49 -66.02 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.76 Total: 33.82 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 6.39 Total: 18.78 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -4.39 Total: -126.56 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.29 Total: -35.99 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -70.51 4.49 -66.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.023 kcal (2) G-P(sol) polarization free energy of solvation -70.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds