Wall clock time and date at job start Mon Mar 30 2020 01:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34790 * 117.00304 * 2 1 4 4 O 1.21535 * 119.99653 * 0.02562 * 3 2 1 5 5 C 1.47202 * 120.00262 * 179.97438 * 3 2 1 6 6 C 1.39114 * 120.36116 * 0.02562 * 5 3 2 7 7 C 1.38646 * 120.68828 * 179.97438 * 6 5 3 8 8 C 1.37692 * 120.95398 * 0.02562 * 7 6 5 9 9 C 1.39852 * 119.89075 * 359.69451 * 8 7 6 10 10 C 1.41742 * 121.97435 * 179.76739 * 9 8 7 11 11 N 1.37735 * 120.92410 * 0.56045 * 10 9 8 12 12 C 1.36761 * 120.00048 * 179.71513 * 11 10 9 13 13 H 1.08005 * 120.00046 * 359.97438 * 12 11 10 14 14 C 1.38985 * 120.00171 * 179.97438 * 12 11 10 15 15 N 1.31436 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00240 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46902 * 60.00455 * 16 14 12 18 18 H 1.48496 * 109.47187 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46906 * 300.00512 * 16 14 12 20 20 N 1.32799 * 118.15173 * 180.28490 * 10 9 8 21 21 C 1.32173 * 121.44596 * 0.25120 * 20 10 9 22 22 N 1.31400 * 122.93943 * 0.02562 * 21 20 10 23 23 C 1.33707 * 120.53566 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47360 * 299.99582 * 1 2 3 25 25 H 1.08999 * 109.47403 * 60.00312 * 1 2 3 26 26 H 1.09004 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.65749 * 359.95678 * 6 5 3 28 28 H 1.07997 * 119.52668 * 180.02562 * 7 6 5 29 29 H 1.07999 * 120.05518 * 179.97438 * 8 7 6 30 30 H 0.97005 * 119.99847 * 359.71426 * 11 10 9 31 31 H 0.97001 * 119.99709 * 179.97438 * 15 14 12 32 32 H 1.08001 * 118.52995 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2202 0.0005 5 6 3.5340 1.2780 0.0006 6 6 4.2990 0.1161 0.0006 7 6 5.6839 0.1807 0.0006 8 6 6.3363 1.3933 0.0011 9 6 5.5988 2.5815 -0.0048 10 6 6.2245 3.8533 0.0003 11 7 7.5972 3.9668 -0.0001 12 6 8.1810 5.2035 -0.0009 13 1 7.5658 6.0912 -0.0017 14 6 9.5662 5.3181 -0.0008 15 7 10.3149 4.2379 -0.0003 16 14 10.3637 7.0073 -0.0027 17 1 9.9418 7.7553 1.2090 18 1 11.8411 6.8572 -0.0016 19 1 9.9421 7.7524 -1.2161 20 7 5.4505 4.9324 -0.0001 21 6 4.1323 4.8355 -0.0002 22 7 3.5006 3.6833 0.0006 23 6 4.1839 2.5340 0.0010 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.8089 -0.8464 0.0009 28 1 6.2594 -0.7332 0.0002 29 1 7.4158 1.4267 0.0015 30 1 8.1498 3.1696 0.0003 31 1 11.2816 4.3179 -0.0006 32 1 3.5483 5.7440 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:09 Heat of formation + Delta-G solvation = -15.464456 kcal Electronic energy + Delta-G solvation = -19976.155126 eV Core-core repulsion = 16708.948809 eV Total energy + Delta-G solvation = -3267.206317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42341 -39.44345 -36.81980 -36.16323 -35.69040 -33.14992 -31.21438 -30.80591 -29.20700 -27.39264 -25.60384 -24.11692 -23.03904 -22.30205 -20.02632 -18.92887 -18.28328 -17.33329 -16.58344 -16.39939 -15.86715 -15.26590 -15.04185 -14.54131 -14.22158 -14.12575 -13.78818 -13.18555 -12.94916 -12.90425 -12.14601 -12.08802 -12.01685 -11.62744 -11.48333 -11.38746 -11.05389 -10.96652 -10.73384 -10.39339 -9.96682 -9.69815 -9.43324 -8.77759 -8.55775 -7.84097 -7.25074 -7.24221 -4.27443 0.78598 1.69441 2.46920 2.90041 2.93283 2.96176 3.14197 3.18047 3.61690 3.88499 4.34381 4.47862 5.09740 5.15883 5.16752 5.26522 5.31357 5.35953 5.41747 5.57061 5.61964 5.71082 5.92097 6.19947 6.41547 6.50363 6.61139 6.79751 6.81712 6.88362 7.06275 7.17268 7.61807 7.98477 8.24457 8.44645 8.59615 8.83865 9.58219 9.86242 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.037693 B = 0.004476 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.670894 B = 6253.778032 C = 6981.303457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.370 6.370 3 C 0.505 3.495 4 O -0.477 6.477 5 C -0.175 4.175 6 C -0.016 4.016 7 C -0.200 4.200 8 C -0.035 4.035 9 C -0.200 4.200 10 C 0.344 3.656 11 N -0.460 5.460 12 C -0.267 4.267 13 H 0.130 0.870 14 C 0.025 3.975 15 N -0.853 5.853 16 Si 0.952 3.048 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.263 1.263 20 N -0.612 5.612 21 C 0.357 3.643 22 N -0.603 5.603 23 C 0.262 3.738 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.130 0.870 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.411 0.589 31 H 0.291 0.709 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 -6.770 0.001 8.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.289 6.289 3 C 0.350 3.650 4 O -0.363 6.363 5 C -0.181 4.181 6 C -0.036 4.036 7 C -0.221 4.221 8 C -0.057 4.057 9 C -0.209 4.209 10 C 0.090 3.910 11 N -0.058 5.058 12 C -0.400 4.400 13 H 0.148 0.852 14 C -0.185 4.185 15 N -0.485 5.485 16 Si 0.775 3.225 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.187 1.187 20 N -0.344 5.344 21 C 0.065 3.935 22 N -0.330 5.330 23 C 0.130 3.870 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.148 0.852 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.249 0.751 31 H 0.101 0.899 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.612 -5.512 0.001 7.866 hybrid contribution 1.125 -0.406 0.001 1.196 sum -4.486 -5.918 0.002 7.427 Atomic orbital electron populations 1.23087 0.77356 1.02717 1.02203 1.86543 1.22479 1.34078 1.85768 1.20902 0.88940 0.81025 0.74158 1.90869 1.66040 1.35245 1.44121 1.18329 0.88617 0.92506 1.18614 1.21298 0.93680 0.97074 0.91522 1.20611 0.93907 0.97293 1.10256 1.21125 0.99055 0.91847 0.93688 1.18754 0.95196 0.93726 1.13237 1.18118 0.85353 0.88212 0.99339 1.41077 1.01796 1.10245 1.52707 1.20480 0.90512 0.85905 1.43132 0.85209 1.25833 0.96264 1.01211 0.95227 1.69595 1.07825 1.29761 1.41356 0.85542 0.77594 0.79154 0.80177 1.18742 1.20160 1.18737 1.67777 1.06243 1.30832 1.29591 1.24323 0.86919 0.95453 0.86797 1.68956 1.37885 0.96953 1.29232 1.18216 0.87832 0.92169 0.88736 0.92356 0.92349 0.88810 0.85235 0.85986 0.86284 0.75106 0.89866 0.80967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.57 101.05 1.07 1.55 16 2 O -0.37 -5.81 9.80 -40.74 -0.40 -6.21 16 3 C 0.51 9.78 7.89 34.37 0.27 10.05 16 4 O -0.48 -10.50 15.03 -19.29 -0.29 -10.79 16 5 C -0.17 -3.44 5.90 -104.72 -0.62 -4.06 16 6 C -0.02 -0.25 9.59 -39.11 -0.38 -0.63 16 7 C -0.20 -3.12 9.99 -39.63 -0.40 -3.52 16 8 C -0.04 -0.63 9.57 -39.18 -0.37 -1.01 16 9 C -0.20 -4.28 5.75 -106.68 -0.61 -4.89 16 10 C 0.34 7.90 7.50 -154.90 -1.16 6.74 16 11 N -0.46 -10.46 5.33 -10.71 -0.06 -10.52 16 12 C -0.27 -6.28 9.71 -15.08 -0.15 -6.42 16 13 H 0.13 3.10 7.12 -52.48 -0.37 2.73 16 14 C 0.02 0.55 5.50 -17.44 -0.10 0.45 16 15 N -0.85 -19.40 13.05 55.50 0.72 -18.68 16 16 Si 0.95 17.46 29.55 -169.99 -5.02 12.44 16 17 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 18 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 N -0.61 -14.26 9.22 -13.50 -0.12 -14.38 16 21 C 0.36 7.79 12.22 -92.16 -1.13 6.66 16 22 N -0.60 -13.95 8.60 -12.42 -0.11 -14.06 16 23 C 0.26 5.82 6.61 -84.57 -0.56 5.26 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.13 1.71 7.58 -52.48 -0.40 1.32 16 28 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.12 1.96 6.56 -52.49 -0.34 1.62 16 30 H 0.41 8.92 6.13 -40.82 -0.25 8.66 16 31 H 0.29 6.15 8.31 -40.82 -0.34 5.81 16 32 H 0.17 3.14 8.06 -52.49 -0.42 2.72 16 LS Contribution 288.94 15.07 4.35 4.35 Total: -1.00 -28.59 288.94 -7.67 -36.26 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -2.61 Total: 11.41 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -4.13 Total: 10.18 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.44 Total: -57.64 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.69 Total: -17.01 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.02 Total: 12.44 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.59 -7.67 -36.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.796 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds