Wall clock time and date at job start Mon Mar 30 2020 01:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34790 * 117.00304 * 2 1 4 4 O 1.21535 * 119.99653 * 0.02562 * 3 2 1 5 5 C 1.47202 * 120.00262 * 179.97438 * 3 2 1 6 6 C 1.39114 * 120.36116 * 0.02562 * 5 3 2 7 7 C 1.38646 * 120.68828 * 179.97438 * 6 5 3 8 8 C 1.37692 * 120.95398 * 0.02562 * 7 6 5 9 9 C 1.39852 * 119.89075 * 359.69451 * 8 7 6 10 10 C 1.41742 * 121.97435 * 179.76739 * 9 8 7 11 11 N 1.37735 * 120.92410 * 0.56045 * 10 9 8 12 12 C 1.36761 * 120.00048 * 179.71513 * 11 10 9 13 13 H 1.08005 * 120.00046 * 359.97438 * 12 11 10 14 14 C 1.38985 * 120.00171 * 179.97438 * 12 11 10 15 15 N 1.31436 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00240 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46902 * 60.00455 * 16 14 12 18 18 H 1.48496 * 109.47187 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46906 * 300.00512 * 16 14 12 20 20 N 1.32799 * 118.15173 * 180.28490 * 10 9 8 21 21 C 1.32173 * 121.44596 * 0.25120 * 20 10 9 22 22 N 1.31400 * 122.93943 * 0.02562 * 21 20 10 23 23 C 1.33707 * 120.53566 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47360 * 299.99582 * 1 2 3 25 25 H 1.08999 * 109.47403 * 60.00312 * 1 2 3 26 26 H 1.09004 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.65749 * 359.95678 * 6 5 3 28 28 H 1.07997 * 119.52668 * 180.02562 * 7 6 5 29 29 H 1.07999 * 120.05518 * 179.97438 * 8 7 6 30 30 H 0.97005 * 119.99847 * 359.71426 * 11 10 9 31 31 H 0.97001 * 119.99709 * 179.97438 * 15 14 12 32 32 H 1.08001 * 118.52995 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2202 0.0005 5 6 3.5340 1.2780 0.0006 6 6 4.2990 0.1161 0.0006 7 6 5.6839 0.1807 0.0006 8 6 6.3363 1.3933 0.0011 9 6 5.5988 2.5815 -0.0048 10 6 6.2245 3.8533 0.0003 11 7 7.5972 3.9668 -0.0001 12 6 8.1810 5.2035 -0.0009 13 1 7.5658 6.0912 -0.0017 14 6 9.5662 5.3181 -0.0008 15 7 10.3149 4.2379 -0.0003 16 14 10.3637 7.0073 -0.0027 17 1 9.9418 7.7553 1.2090 18 1 11.8411 6.8572 -0.0016 19 1 9.9421 7.7524 -1.2161 20 7 5.4505 4.9324 -0.0001 21 6 4.1323 4.8355 -0.0002 22 7 3.5006 3.6833 0.0006 23 6 4.1839 2.5340 0.0010 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.8089 -0.8464 0.0009 28 1 6.2594 -0.7332 0.0002 29 1 7.4158 1.4267 0.0015 30 1 8.1498 3.1696 0.0003 31 1 11.2816 4.3179 -0.0006 32 1 3.5483 5.7440 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:08 Heat of formation + Delta-G solvation = -31.010487 kcal Electronic energy + Delta-G solvation = -19976.829253 eV Core-core repulsion = 16708.948809 eV Total energy + Delta-G solvation = -3267.880444 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.00243 -40.90512 -38.35277 -37.76752 -37.13235 -34.78246 -32.83447 -32.33299 -30.77803 -28.50439 -27.25602 -25.61827 -24.59076 -23.86383 -21.49496 -20.56820 -19.81634 -18.80966 -18.21482 -17.80602 -17.18612 -16.77353 -16.57775 -16.04856 -15.78093 -15.71823 -15.29094 -14.55285 -14.45664 -14.24231 -13.67995 -13.59661 -13.37311 -12.98690 -12.88298 -12.81596 -12.60730 -12.54194 -12.15414 -11.64032 -11.54168 -11.31119 -11.03891 -10.38200 -10.07400 -9.56217 -8.86074 -8.85860 -6.02728 -0.70489 0.14776 0.83349 1.40332 1.49967 1.51300 1.70592 1.83739 2.12339 2.36253 2.70499 2.83589 3.50013 3.58152 3.69095 3.82134 4.02761 4.09765 4.23140 4.41128 4.42781 4.48035 4.70125 4.75817 4.87766 5.05360 5.15255 5.24740 5.36832 5.43014 5.48334 5.72559 6.01091 6.32044 6.58335 6.92007 6.99810 7.18669 7.88744 8.27086 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.037693 B = 0.004476 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.670894 B = 6253.778032 C = 6981.303457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.507 3.493 4 O -0.513 6.513 5 C -0.191 4.191 6 C 0.005 3.995 7 C -0.174 4.174 8 C -0.036 4.036 9 C -0.226 4.226 10 C 0.346 3.654 11 N -0.473 5.473 12 C -0.306 4.306 13 H 0.114 0.886 14 C -0.004 4.004 15 N -0.883 5.883 16 Si 1.009 2.991 17 H -0.264 1.264 18 H -0.267 1.267 19 H -0.264 1.264 20 N -0.637 5.637 21 C 0.348 3.652 22 N -0.620 5.620 23 C 0.226 3.774 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.138 0.862 27 H 0.172 0.828 28 H 0.172 0.828 29 H 0.133 0.867 30 H 0.412 0.588 31 H 0.294 0.706 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.947 -9.622 0.001 11.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.279 6.279 3 C 0.353 3.647 4 O -0.402 6.402 5 C -0.196 4.196 6 C -0.014 4.014 7 C -0.193 4.193 8 C -0.057 4.057 9 C -0.235 4.235 10 C 0.091 3.909 11 N -0.074 5.074 12 C -0.438 4.438 13 H 0.132 0.868 14 C -0.211 4.211 15 N -0.517 5.517 16 Si 0.830 3.170 17 H -0.189 1.189 18 H -0.192 1.192 19 H -0.189 1.189 20 N -0.371 5.371 21 C 0.056 3.944 22 N -0.347 5.347 23 C 0.097 3.903 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.189 0.811 28 H 0.189 0.811 29 H 0.151 0.849 30 H 0.250 0.750 31 H 0.104 0.896 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.208 -8.431 0.001 10.470 hybrid contribution 0.921 0.116 0.001 0.928 sum -5.287 -8.315 0.002 9.854 Atomic orbital electron populations 1.23486 0.74913 1.05600 1.02067 1.86508 1.24725 1.31701 1.84925 1.20940 0.88946 0.81552 0.73278 1.90853 1.66799 1.36727 1.45816 1.18679 0.89514 0.92781 1.18595 1.21809 0.93883 0.97457 0.88299 1.21197 0.93983 0.97995 1.06169 1.21445 0.99882 0.91694 0.92678 1.18910 0.95241 0.94363 1.14999 1.18540 0.85680 0.89116 0.97554 1.40961 1.01489 1.10059 1.54892 1.20407 0.91132 0.85835 1.46402 0.86810 1.26499 0.96017 1.04129 0.94412 1.69631 1.08039 1.30954 1.43029 0.84714 0.77032 0.75468 0.79743 1.18899 1.19158 1.18889 1.67815 1.06874 1.31607 1.30803 1.24824 0.86841 0.96285 0.86417 1.68966 1.38711 0.97754 1.29303 1.18648 0.88537 0.92900 0.90180 0.92572 0.92563 0.84356 0.81108 0.81079 0.84921 0.74985 0.89555 0.78495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.57 113.37 1.20 1.86 16 2 O -0.36 -10.15 9.80 -57.01 -0.56 -10.71 16 3 C 0.51 18.78 7.89 70.18 0.55 19.33 16 4 O -0.51 -22.46 15.03 19.72 0.30 -22.16 16 5 C -0.19 -7.12 5.90 -19.93 -0.12 -7.24 16 6 C 0.01 0.15 9.59 22.58 0.22 0.36 16 7 C -0.17 -4.57 9.99 22.24 0.22 -4.35 16 8 C -0.04 -1.21 9.57 22.53 0.22 -0.99 16 9 C -0.23 -9.65 5.75 -21.20 -0.12 -9.77 16 10 C 0.35 16.38 7.50 134.02 1.01 17.38 16 11 N -0.47 -22.30 5.33 -187.80 -1.00 -23.30 16 12 C -0.31 -15.01 9.71 84.10 0.82 -14.19 16 13 H 0.11 5.78 7.12 -2.91 -0.02 5.75 16 14 C 0.00 -0.18 5.50 84.93 0.47 0.28 16 15 N -0.88 -40.97 13.05 21.67 0.28 -40.69 16 16 Si 1.01 36.53 29.55 68.60 2.03 38.55 16 17 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 18 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 19 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 20 N -0.64 -30.88 9.22 -196.61 -1.81 -32.69 16 21 C 0.35 15.66 12.22 180.89 2.21 17.87 16 22 N -0.62 -29.23 8.60 -193.22 -1.66 -30.89 16 23 C 0.23 10.02 6.61 40.46 0.27 10.29 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.14 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.17 3.40 7.58 -2.91 -0.02 3.38 16 28 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.13 4.13 6.56 -2.91 -0.02 4.11 16 30 H 0.41 18.40 6.13 -92.70 -0.57 17.83 16 31 H 0.29 12.61 8.31 -92.71 -0.77 11.84 16 32 H 0.20 7.42 8.06 -2.91 -0.02 7.40 16 Total: -1.00 -64.96 288.94 5.12 -59.84 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.62 Total: 31.22 kcal Atomic # 6 Polarization: 23.90 SS G_CDS: 6.93 Total: 30.84 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -4.19 Total: -127.57 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.26 Total: -32.87 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.55 kcal Total: -64.96 5.12 -59.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.828 kcal (2) G-P(sol) polarization free energy of solvation -64.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds