Wall clock time and date at job start Mon Mar 30 2020 01:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34709 * 116.99782 * 2 1 4 4 O 1.21435 * 120.00173 * 359.97438 * 3 2 1 5 5 C 1.48070 * 120.00015 * 180.27592 * 3 2 1 6 6 N 1.32715 * 120.94392 * 354.37293 * 5 3 2 7 7 C 1.32081 * 121.48082 * 179.97438 * 6 5 3 8 8 N 1.31354 * 123.07702 * 359.97438 * 7 6 5 9 9 C 1.33516 * 120.53381 * 0.02581 * 8 7 6 10 10 C 1.40604 * 121.88944 * 180.02562 * 9 8 7 11 11 C 1.35841 * 119.82395 * 179.97438 * 10 9 8 12 12 C 1.40309 * 121.00376 * 359.97438 * 11 10 9 13 13 N 1.38948 * 119.69277 * 180.02562 * 12 11 10 14 14 C 1.36654 * 120.00052 * 5.41962 * 13 12 11 15 15 H 1.08010 * 119.99996 * 5.25135 * 14 13 12 16 16 C 1.38918 * 120.00161 * 185.24644 * 14 13 12 17 17 N 1.31498 * 120.00080 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00022 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46848 * 90.00478 * 18 16 14 20 20 H 1.48508 * 109.46948 * 210.00107 * 18 16 14 21 21 H 1.48499 * 109.47283 * 330.00244 * 18 16 14 22 22 C 1.38245 * 120.61796 * 0.04237 * 12 11 10 23 23 C 1.39745 * 119.33498 * 359.70300 * 22 12 11 24 24 H 1.08994 * 109.46811 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46881 * 300.00165 * 1 2 3 26 26 H 1.08994 * 109.47099 * 60.00175 * 1 2 3 27 27 H 1.08006 * 118.45859 * 180.02562 * 7 6 5 28 28 H 1.07996 * 120.08194 * 0.02562 * 10 9 8 29 29 H 1.07999 * 119.50228 * 179.97438 * 11 10 9 30 30 H 0.97001 * 119.99455 * 185.42455 * 13 12 11 31 31 H 0.97002 * 120.00275 * 179.97438 * 17 16 14 32 32 H 1.07999 * 120.33748 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4022 2.2187 -0.0005 5 6 3.5422 1.2778 -0.0062 6 7 4.2835 0.1821 0.0999 7 6 5.6031 0.2390 0.0950 8 7 6.2718 1.3643 -0.0137 9 6 5.6273 2.5282 -0.1262 10 6 6.3142 3.7493 -0.2447 11 6 5.6160 4.9090 -0.3574 12 6 4.2129 4.9108 -0.3583 13 7 3.5262 6.1130 -0.4756 14 6 4.2128 7.2729 -0.7005 15 1 5.2789 7.2450 -0.8714 16 6 3.5396 8.4881 -0.7093 17 7 2.2417 8.5222 -0.5007 18 14 4.4781 10.0736 -1.0173 19 1 4.5021 10.3594 -2.4744 20 1 3.8087 11.1914 -0.3046 21 1 5.8692 9.9305 -0.5179 22 6 3.5073 3.7276 -0.2432 23 6 4.2054 2.5222 -0.1315 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 6.1583 -0.6832 0.1838 28 1 7.3941 3.7649 -0.2469 29 1 6.1489 5.8440 -0.4477 30 1 2.5595 6.1288 -0.3979 31 1 1.7716 9.3707 -0.5065 32 1 2.4273 3.7342 -0.2439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:43 Heat of formation + Delta-G solvation = -8.685309 kcal Electronic energy + Delta-G solvation = -19935.619157 eV Core-core repulsion = 16668.706806 eV Total energy + Delta-G solvation = -3266.912351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69631 -39.51893 -37.85411 -36.14430 -35.07863 -33.32623 -32.24288 -30.45153 -28.70999 -27.62000 -25.32328 -24.93187 -22.59755 -22.41897 -20.80431 -18.55376 -18.31818 -17.52666 -16.95084 -16.50515 -16.05108 -15.33459 -14.96797 -14.49925 -14.32912 -14.22588 -13.64268 -13.27876 -12.95930 -12.76042 -12.59728 -12.48406 -12.02687 -11.89838 -11.51650 -11.46829 -10.78996 -10.72775 -10.65499 -10.52194 -10.33205 -10.04253 -9.84838 -9.15770 -8.55002 -8.34953 -7.21059 -6.95945 -4.16201 0.50096 1.62957 2.31477 2.81705 2.86208 2.90325 2.95001 3.12542 3.59048 3.73430 4.50339 4.64390 4.68195 4.86309 4.93318 5.20393 5.26123 5.33319 5.44121 5.58011 5.73679 5.80450 6.11536 6.22043 6.51454 6.54612 6.66333 6.73179 6.79367 7.04643 7.15486 7.29730 7.55078 7.69680 8.09061 8.18913 8.67390 8.81213 8.85112 9.90851 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.021397 B = 0.005103 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.255237 B = 5485.872142 C = 6771.853723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.343 6.343 3 C 0.529 3.471 4 O -0.497 6.497 5 C 0.068 3.932 6 N -0.449 5.449 7 C 0.176 3.824 8 N -0.459 5.459 9 C 0.089 3.911 10 C -0.070 4.070 11 C -0.111 4.111 12 C 0.183 3.817 13 N -0.494 5.494 14 C -0.300 4.300 15 H 0.116 0.884 16 C 0.028 3.972 17 N -0.850 5.850 18 Si 0.944 3.056 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.261 1.261 22 C -0.282 4.282 23 C -0.020 4.020 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.182 0.818 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.409 0.591 31 H 0.289 0.711 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 -5.905 0.022 5.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.258 6.258 3 C 0.373 3.627 4 O -0.384 6.384 5 C -0.087 4.087 6 N -0.164 5.164 7 C -0.111 4.111 8 N -0.173 5.173 9 C -0.054 4.054 10 C -0.092 4.092 11 C -0.135 4.135 12 C 0.053 3.947 13 N -0.085 5.085 14 C -0.431 4.431 15 H 0.134 0.866 16 C -0.182 4.182 17 N -0.481 5.481 18 Si 0.768 3.232 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.185 1.185 22 C -0.310 4.310 23 C -0.027 4.027 24 H 0.116 0.884 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.198 0.802 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.246 0.754 31 H 0.100 0.900 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.064 -5.910 0.069 6.005 hybrid contribution -0.792 1.515 -0.153 1.716 sum 0.272 -4.395 -0.084 4.405 Atomic orbital electron populations 1.23230 0.77086 1.03243 1.02392 1.86680 1.22418 1.32542 1.84200 1.20747 0.87732 0.81223 0.72963 1.90695 1.65924 1.35440 1.46311 1.19729 0.89715 0.89578 1.09682 1.67801 1.08717 1.31749 1.08177 1.23909 0.86447 0.95728 1.04977 1.68189 1.41421 0.98752 1.08944 1.18647 0.89428 0.92404 1.04874 1.20348 0.99338 0.89615 0.99877 1.20773 0.92730 0.98410 1.01595 1.17946 0.91239 0.86398 0.99118 1.41459 1.09807 1.03859 1.53398 1.20179 0.95425 0.83488 1.44001 0.86611 1.25675 0.95997 1.00884 0.95661 1.69651 1.07797 1.29741 1.40902 0.85611 0.79500 0.78856 0.79216 1.19393 1.19986 1.18500 1.20579 1.00886 0.88965 1.20521 1.18452 0.93639 0.93281 0.97321 0.88393 0.92073 0.92060 0.80163 0.85137 0.84991 0.75439 0.90045 0.83379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 101.05 1.07 1.50 16 2 O -0.34 -5.86 10.44 -40.52 -0.42 -6.28 16 3 C 0.53 10.43 7.93 34.76 0.28 10.70 16 4 O -0.50 -10.39 13.36 -19.21 -0.26 -10.64 16 5 C 0.07 1.42 6.86 -82.19 -0.56 0.85 16 6 N -0.45 -8.85 10.23 -10.83 -0.11 -8.96 16 7 C 0.18 3.21 12.21 -92.28 -1.13 2.08 16 8 N -0.46 -8.89 10.42 -12.54 -0.13 -9.03 16 9 C 0.09 1.81 6.63 -84.73 -0.56 1.25 16 10 C -0.07 -1.27 9.99 -39.55 -0.40 -1.67 16 11 C -0.11 -2.08 9.18 -39.66 -0.36 -2.45 16 12 C 0.18 3.85 6.60 -83.85 -0.55 3.30 16 13 N -0.49 -10.87 5.40 -9.60 -0.05 -10.92 16 14 C -0.30 -6.54 9.50 -15.15 -0.14 -6.68 16 15 H 0.12 2.31 5.72 -52.48 -0.30 2.01 16 16 C 0.03 0.60 5.50 -17.44 -0.10 0.51 16 17 N -0.85 -19.72 13.06 55.50 0.72 -19.00 16 18 Si 0.94 16.72 29.55 -169.99 -5.02 11.69 16 19 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 20 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.26 -4.47 7.11 56.52 0.40 -4.07 16 22 C -0.28 -6.13 9.13 -39.02 -0.36 -6.49 16 23 C -0.02 -0.43 5.76 -106.55 -0.61 -1.04 16 24 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.18 2.58 8.06 -52.48 -0.42 2.16 16 28 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 29 H 0.13 2.24 5.96 -52.49 -0.31 1.93 16 30 H 0.41 9.34 7.90 -40.82 -0.32 9.02 16 31 H 0.29 6.25 8.31 -40.82 -0.34 5.91 16 32 H 0.15 3.35 5.07 -52.49 -0.27 3.08 16 LS Contribution 287.13 15.07 4.33 4.33 Total: -1.00 -26.30 287.13 -6.83 -33.13 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -2.45 Total: 13.82 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -3.43 Total: 1.86 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.43 Total: -47.90 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.68 Total: -16.93 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.02 Total: 11.69 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.30 -6.83 -33.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.444 kcal (2) G-P(sol) polarization free energy of solvation -26.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds