Wall clock time and date at job start Mon Mar 30 2020 01:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34709 * 116.99782 * 2 1 4 4 O 1.21435 * 120.00173 * 359.97438 * 3 2 1 5 5 C 1.48070 * 120.00015 * 180.27592 * 3 2 1 6 6 N 1.32715 * 120.94392 * 354.37293 * 5 3 2 7 7 C 1.32081 * 121.48082 * 179.97438 * 6 5 3 8 8 N 1.31354 * 123.07702 * 359.97438 * 7 6 5 9 9 C 1.33516 * 120.53381 * 0.02581 * 8 7 6 10 10 C 1.40604 * 121.88944 * 180.02562 * 9 8 7 11 11 C 1.35841 * 119.82395 * 179.97438 * 10 9 8 12 12 C 1.40309 * 121.00376 * 359.97438 * 11 10 9 13 13 N 1.38948 * 119.69277 * 180.02562 * 12 11 10 14 14 C 1.36654 * 120.00052 * 5.41962 * 13 12 11 15 15 H 1.08010 * 119.99996 * 5.25135 * 14 13 12 16 16 C 1.38918 * 120.00161 * 185.24644 * 14 13 12 17 17 N 1.31498 * 120.00080 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00022 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46848 * 90.00478 * 18 16 14 20 20 H 1.48508 * 109.46948 * 210.00107 * 18 16 14 21 21 H 1.48499 * 109.47283 * 330.00244 * 18 16 14 22 22 C 1.38245 * 120.61796 * 0.04237 * 12 11 10 23 23 C 1.39745 * 119.33498 * 359.70300 * 22 12 11 24 24 H 1.08994 * 109.46811 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46881 * 300.00165 * 1 2 3 26 26 H 1.08994 * 109.47099 * 60.00175 * 1 2 3 27 27 H 1.08006 * 118.45859 * 180.02562 * 7 6 5 28 28 H 1.07996 * 120.08194 * 0.02562 * 10 9 8 29 29 H 1.07999 * 119.50228 * 179.97438 * 11 10 9 30 30 H 0.97001 * 119.99455 * 185.42455 * 13 12 11 31 31 H 0.97002 * 120.00275 * 179.97438 * 17 16 14 32 32 H 1.07999 * 120.33748 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4022 2.2187 -0.0005 5 6 3.5422 1.2778 -0.0062 6 7 4.2835 0.1821 0.0999 7 6 5.6031 0.2390 0.0950 8 7 6.2718 1.3643 -0.0137 9 6 5.6273 2.5282 -0.1262 10 6 6.3142 3.7493 -0.2447 11 6 5.6160 4.9090 -0.3574 12 6 4.2129 4.9108 -0.3583 13 7 3.5262 6.1130 -0.4756 14 6 4.2128 7.2729 -0.7005 15 1 5.2789 7.2450 -0.8714 16 6 3.5396 8.4881 -0.7093 17 7 2.2417 8.5222 -0.5007 18 14 4.4781 10.0736 -1.0173 19 1 4.5021 10.3594 -2.4744 20 1 3.8087 11.1914 -0.3046 21 1 5.8692 9.9305 -0.5179 22 6 3.5073 3.7276 -0.2432 23 6 4.2054 2.5222 -0.1315 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 6.1583 -0.6832 0.1838 28 1 7.3941 3.7649 -0.2469 29 1 6.1489 5.8440 -0.4477 30 1 2.5595 6.1288 -0.3979 31 1 1.7716 9.3707 -0.5065 32 1 2.4273 3.7342 -0.2439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:42 Heat of formation + Delta-G solvation = -23.417069 kcal Electronic energy + Delta-G solvation = -19936.257974 eV Core-core repulsion = 16668.706806 eV Total energy + Delta-G solvation = -3267.551168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.26614 -41.01291 -39.43011 -37.60453 -36.62926 -34.91028 -33.82969 -32.00616 -30.25297 -28.86925 -26.90115 -26.42113 -24.14392 -23.97846 -22.31952 -20.15206 -19.82898 -19.07735 -18.47081 -17.95634 -17.46378 -16.89132 -16.49562 -16.00155 -15.79170 -15.75440 -15.11206 -14.75409 -14.34072 -14.24391 -14.13965 -13.97111 -13.52640 -13.10350 -12.96388 -12.93954 -12.25971 -12.20363 -12.14555 -11.89052 -11.81281 -11.61918 -11.43820 -10.75644 -10.12889 -9.87919 -8.77210 -8.59228 -5.85269 -1.06871 0.04924 0.74951 1.41923 1.43158 1.55274 1.56481 1.59077 2.14898 2.18932 2.92314 3.05824 3.17004 3.34129 3.38627 3.71848 3.84374 4.21739 4.27424 4.32220 4.33273 4.59145 4.63754 4.75012 4.94010 5.04230 5.12579 5.22239 5.28670 5.48306 5.57373 5.72486 5.91519 6.11599 6.49188 6.67035 7.08963 7.22903 7.23893 8.37454 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.021397 B = 0.005103 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.255237 B = 5485.872142 C = 6771.853723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.345 6.345 3 C 0.528 3.472 4 O -0.516 6.516 5 C 0.062 3.938 6 N -0.454 5.454 7 C 0.189 3.811 8 N -0.458 5.458 9 C 0.077 3.923 10 C -0.055 4.055 11 C -0.117 4.117 12 C 0.186 3.814 13 N -0.517 5.517 14 C -0.322 4.322 15 H 0.131 0.869 16 C -0.016 4.016 17 N -0.899 5.899 18 Si 1.009 2.991 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.247 1.247 22 C -0.300 4.300 23 C -0.038 4.038 24 H 0.139 0.861 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.225 0.775 28 H 0.167 0.833 29 H 0.152 0.848 30 H 0.398 0.602 31 H 0.288 0.712 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.972 -7.706 0.045 8.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.260 6.260 3 C 0.373 3.627 4 O -0.404 6.404 5 C -0.093 4.093 6 N -0.170 5.170 7 C -0.098 4.098 8 N -0.172 5.172 9 C -0.064 4.064 10 C -0.076 4.076 11 C -0.141 4.141 12 C 0.058 3.942 13 N -0.110 5.110 14 C -0.452 4.452 15 H 0.149 0.851 16 C -0.221 4.221 17 N -0.532 5.532 18 Si 0.830 3.170 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.171 1.171 22 C -0.328 4.328 23 C -0.044 4.044 24 H 0.157 0.843 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.241 0.759 28 H 0.184 0.816 29 H 0.170 0.830 30 H 0.232 0.768 31 H 0.097 0.903 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.119 -7.750 0.092 8.354 hybrid contribution -1.407 1.517 -0.112 2.072 sum 1.712 -6.233 -0.020 6.464 Atomic orbital electron populations 1.23648 0.74325 1.06031 1.02657 1.86652 1.25069 1.30872 1.83443 1.20717 0.87621 0.81754 0.72633 1.90698 1.66305 1.36291 1.47128 1.20050 0.90677 0.89832 1.08777 1.67937 1.09405 1.31090 1.08571 1.24895 0.86235 0.96941 1.01746 1.68318 1.41168 0.98695 1.09023 1.19021 0.89079 0.93700 1.04640 1.20696 1.00949 0.88291 0.97710 1.20964 0.91601 0.99721 1.01832 1.18259 0.92450 0.85945 0.97524 1.41466 1.09234 1.04331 1.55974 1.20543 0.96140 0.83591 1.44916 0.85122 1.26554 0.96566 1.03616 0.95325 1.69755 1.09367 1.30138 1.43966 0.84657 0.78708 0.74899 0.78715 1.19400 1.20606 1.17056 1.20533 1.00409 0.89805 1.22082 1.18707 0.94654 0.93399 0.97664 0.84332 0.91821 0.91882 0.75867 0.81581 0.83012 0.76789 0.90267 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.57 113.37 1.20 1.80 16 2 O -0.35 -11.33 10.44 -56.18 -0.59 -11.91 16 3 C 0.53 20.68 7.93 70.43 0.56 21.24 16 4 O -0.52 -22.01 13.36 20.05 0.27 -21.75 16 5 C 0.06 2.52 6.86 42.44 0.29 2.81 16 6 N -0.45 -16.81 10.23 -188.17 -1.92 -18.74 16 7 C 0.19 6.20 12.21 180.93 2.21 8.41 16 8 N -0.46 -16.22 10.42 -193.59 -2.02 -18.24 16 9 C 0.08 2.96 6.63 40.45 0.27 3.23 16 10 C -0.06 -1.86 9.99 22.29 0.22 -1.64 16 11 C -0.12 -4.24 9.18 22.22 0.20 -4.04 16 12 C 0.19 7.97 6.60 38.52 0.25 8.22 16 13 N -0.52 -23.71 5.40 -184.28 -0.99 -24.71 16 14 C -0.32 -14.33 9.50 84.11 0.80 -13.53 16 15 H 0.13 5.17 5.72 -2.91 -0.02 5.15 16 16 C -0.02 -0.73 5.50 84.91 0.47 -0.26 16 17 N -0.90 -43.82 13.06 21.66 0.28 -43.54 16 18 Si 1.01 34.57 29.55 68.60 2.03 36.60 16 19 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 20 H -0.28 -9.73 7.11 99.48 0.71 -9.02 16 21 H -0.25 -7.79 7.11 99.48 0.71 -7.09 16 22 C -0.30 -13.38 9.13 22.64 0.21 -13.17 16 23 C -0.04 -1.60 5.76 -21.12 -0.12 -1.72 16 24 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.23 5.24 8.06 -2.91 -0.02 5.22 16 28 H 0.17 4.37 8.06 -2.91 -0.02 4.35 16 29 H 0.15 4.87 5.96 -2.91 -0.02 4.85 16 30 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 31 H 0.29 13.12 8.31 -92.71 -0.77 12.35 16 32 H 0.13 6.30 5.07 -2.91 -0.01 6.28 16 Total: -1.00 -57.72 287.13 4.08 -53.65 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.46 Total: 37.29 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.56 Total: 11.35 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -4.65 Total: -105.22 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.32 Total: -33.66 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Total: -57.72 4.08 -53.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.231 kcal (2) G-P(sol) polarization free energy of solvation -57.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds