Wall clock time and date at job start Mon Mar 30 2020 01:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34734 * 117.00507 * 2 1 4 4 O 1.21493 * 119.99713 * 0.02562 * 3 2 1 5 5 C 1.47603 * 120.00184 * 179.97438 * 3 2 1 6 6 C 1.40617 * 120.23454 * 359.96619 * 5 3 2 7 7 N 1.30822 * 121.38731 * 179.97438 * 6 5 3 8 8 C 1.33789 * 121.69621 * 0.03585 * 7 6 5 9 9 C 1.40604 * 120.76068 * 179.97438 * 8 7 6 10 10 C 1.38470 * 118.14444 * 180.02562 * 9 8 7 11 11 N 1.38917 * 120.16934 * 180.02562 * 10 9 8 12 12 C 1.36712 * 119.99650 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00076 * 0.02562 * 12 11 10 14 14 C 1.38907 * 120.00076 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99959 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99794 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46702 * 90.00345 * 16 14 12 18 18 H 1.48505 * 109.47037 * 210.00039 * 16 14 12 19 19 H 1.48497 * 109.47095 * 330.00283 * 16 14 12 20 20 C 1.40389 * 119.65277 * 0.02562 * 10 9 8 21 21 N 1.30802 * 121.42492 * 0.02562 * 20 10 9 22 22 C 1.33726 * 121.61043 * 359.95511 * 21 20 10 23 23 C 1.39127 * 120.22920 * 180.02562 * 5 3 2 24 24 H 1.09001 * 109.47217 * 59.99522 * 1 2 3 25 25 H 1.09002 * 109.47600 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46780 * 299.99568 * 1 2 3 27 27 H 1.08007 * 119.30781 * 0.02562 * 6 5 3 28 28 H 1.08002 * 120.92855 * 0.02562 * 9 8 7 29 29 H 0.97002 * 120.00505 * 0.02562 * 11 10 9 30 30 H 0.97006 * 119.99969 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.29215 * 179.97438 * 20 10 9 32 32 H 1.07995 * 120.95392 * 0.26704 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5377 1.2776 0.0006 6 6 4.3083 0.1014 0.0018 7 7 5.6159 0.1435 0.0019 8 6 6.2818 1.3038 0.0014 9 6 7.6877 1.3261 0.0020 10 6 8.3214 2.5573 0.0020 11 7 9.7088 2.6284 0.0020 12 6 10.3308 3.8458 0.0026 13 1 9.7436 4.7523 0.0035 14 6 11.7180 3.9170 0.0021 15 7 12.3163 5.0882 0.0021 16 14 12.7336 2.3492 0.0014 17 1 13.0022 1.9342 -1.3990 18 1 14.0207 2.5929 0.7010 19 1 11.9854 1.2744 0.7014 20 6 7.5545 3.7332 0.0020 21 7 6.2471 3.6947 0.0025 22 6 5.5800 2.5357 0.0021 23 6 4.1744 2.5147 0.0011 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.8103 -0.8570 0.0020 28 1 8.2574 0.4086 0.0024 29 1 10.2362 1.8143 0.0017 30 1 13.2851 5.1379 0.0021 31 1 8.0548 4.6904 0.0025 32 1 3.6051 3.4324 0.0054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187775.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:46 Heat of formation + Delta-G solvation = -15.629208 kcal Electronic energy + Delta-G solvation = -19381.920257 eV Core-core repulsion = 16114.706796 eV Total energy + Delta-G solvation = -3267.213461 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60987 -39.85833 -37.79151 -36.28247 -35.69520 -33.21200 -32.41099 -30.30564 -29.61390 -27.65299 -25.34552 -24.50455 -23.22136 -21.92380 -21.10638 -18.99013 -18.65404 -17.60615 -16.87739 -16.37965 -16.24054 -15.85790 -15.25060 -14.92283 -14.26602 -14.20821 -13.83723 -13.44426 -13.26842 -12.80350 -12.71610 -12.55073 -12.25875 -12.15611 -11.72764 -11.62930 -11.17035 -11.07964 -10.77364 -10.63407 -10.59152 -9.92288 -9.87056 -9.26045 -8.47858 -8.29731 -7.38371 -7.10621 -4.24662 0.64331 1.15203 2.30295 2.71206 2.74470 2.79221 2.80352 2.86878 3.52759 3.55207 4.15011 4.43877 4.77057 4.83613 4.98827 5.03222 5.06754 5.12670 5.19485 5.24220 5.43382 5.53971 5.77740 5.98189 6.13479 6.28832 6.45031 6.51693 6.71926 6.77172 6.88899 7.13084 7.40800 7.89642 7.91229 8.40568 8.45633 8.55191 8.60393 9.96158 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.051691 B = 0.003569 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.554073 B = 7842.762766 C = 8369.172070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.522 3.478 4 O -0.523 6.523 5 C -0.259 4.259 6 C 0.193 3.807 7 N -0.509 5.509 8 C 0.176 3.824 9 C -0.253 4.253 10 C 0.156 3.844 11 N -0.522 5.522 12 C -0.306 4.306 13 H 0.131 0.869 14 C 0.049 3.951 15 N -0.831 5.831 16 Si 0.887 3.113 17 H -0.260 1.260 18 H -0.266 1.266 19 H -0.261 1.261 20 C 0.115 3.885 21 N -0.435 5.435 22 C -0.039 4.039 23 C 0.065 3.935 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.159 0.841 28 H 0.126 0.874 29 H 0.388 0.612 30 H 0.289 0.711 31 H 0.166 0.834 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 -8.091 -0.020 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.369 3.631 4 O -0.413 6.413 5 C -0.266 4.266 6 C 0.017 3.983 7 N -0.220 5.220 8 C 0.056 3.944 9 C -0.286 4.286 10 C 0.025 3.975 11 N -0.119 5.119 12 C -0.436 4.436 13 H 0.149 0.851 14 C -0.162 4.162 15 N -0.462 5.462 16 Si 0.711 3.289 17 H -0.185 1.185 18 H -0.190 1.190 19 H -0.186 1.186 20 C -0.071 4.071 21 N -0.143 5.143 22 C -0.158 4.158 23 C 0.039 3.961 24 H 0.079 0.921 25 H 0.117 0.883 26 H 0.079 0.921 27 H 0.176 0.824 28 H 0.144 0.856 29 H 0.224 0.776 30 H 0.100 0.900 31 H 0.183 0.817 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.746 -7.423 -0.019 12.251 hybrid contribution 0.695 -0.887 0.018 1.127 sum -9.051 -8.310 -0.002 12.288 Atomic orbital electron populations 1.23203 0.76621 1.03342 1.02411 1.86538 1.23030 1.33076 1.84851 1.20990 0.88798 0.81079 0.72225 1.90801 1.66872 1.36029 1.47606 1.19485 0.89395 0.95712 1.22035 1.22944 0.89327 0.96946 0.89133 1.67926 1.08688 1.27974 1.17369 1.19135 0.93815 0.88360 0.93137 1.19932 0.91550 0.95710 1.21407 1.18611 0.84041 0.94722 1.00114 1.41496 1.02868 1.08703 1.58829 1.19789 0.91460 0.85229 1.47147 0.85145 1.25237 0.96749 0.98379 0.95853 1.69639 1.11851 1.23841 1.40844 0.86480 0.80929 0.81494 0.80041 1.18497 1.19020 1.18582 1.22843 0.88494 0.97588 0.98129 1.67674 1.09174 1.27545 1.09896 1.18948 0.93426 0.90072 1.13386 1.21417 0.92159 0.96921 0.85579 0.92076 0.88276 0.92070 0.82379 0.85649 0.77642 0.90005 0.81716 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.63 9.81 -40.58 -0.40 -5.03 16 3 C 0.52 8.19 7.90 34.55 0.27 8.46 16 4 O -0.52 -9.25 16.17 -19.26 -0.31 -9.56 16 5 C -0.26 -4.32 5.88 -104.85 -0.62 -4.94 16 6 C 0.19 3.11 10.76 -17.08 -0.18 2.93 16 7 N -0.51 -9.54 10.30 -10.65 -0.11 -9.65 16 8 C 0.18 3.53 6.61 -84.77 -0.56 2.97 16 9 C -0.25 -4.96 9.98 -38.60 -0.39 -5.35 16 10 C 0.16 3.08 6.63 -83.76 -0.56 2.53 16 11 N -0.52 -10.31 5.22 -9.52 -0.05 -10.36 16 12 C -0.31 -6.67 10.04 -15.13 -0.15 -6.82 16 13 H 0.13 2.94 5.89 -52.49 -0.31 2.64 16 14 C 0.05 1.08 5.50 -17.44 -0.10 0.99 16 15 N -0.83 -19.59 13.96 55.50 0.77 -18.81 16 16 Si 0.89 16.17 27.73 -169.99 -4.71 11.45 16 17 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 18 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 19 H -0.26 -4.49 6.52 56.52 0.37 -4.12 16 20 C 0.11 2.26 10.46 -17.18 -0.18 2.08 16 21 N -0.43 -8.80 10.31 -10.73 -0.11 -8.91 16 22 C -0.04 -0.78 6.60 -84.81 -0.56 -1.34 16 23 C 0.06 1.18 9.67 -38.37 -0.37 0.81 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.16 2.05 7.59 -52.48 -0.40 1.65 16 28 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.39 7.09 5.76 -40.82 -0.23 6.86 16 30 H 0.29 6.27 8.31 -40.82 -0.34 5.93 16 31 H 0.17 3.09 5.93 -52.49 -0.31 2.77 16 32 H 0.14 2.48 7.70 -52.49 -0.40 2.07 16 LS Contribution 288.47 15.07 4.35 4.35 Total: -1.00 -26.06 288.47 -5.41 -31.47 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -2.52 Total: 11.31 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.32 Total: 3.75 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.50 Total: -47.73 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.71 Total: -14.59 kcal Atomic # 14 Polarization: 16.17 SS G_CDS: -4.71 Total: 11.45 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.06 -5.41 -31.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187775.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.836 kcal (2) G-P(sol) polarization free energy of solvation -26.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds