Wall clock time and date at job start Mon Mar 30 2020 01:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34734 * 117.00507 * 2 1 4 4 O 1.21493 * 119.99713 * 0.02562 * 3 2 1 5 5 C 1.47603 * 120.00184 * 179.97438 * 3 2 1 6 6 C 1.40617 * 120.23454 * 359.96619 * 5 3 2 7 7 N 1.30822 * 121.38731 * 179.97438 * 6 5 3 8 8 C 1.33789 * 121.69621 * 0.03585 * 7 6 5 9 9 C 1.40604 * 120.76068 * 179.97438 * 8 7 6 10 10 C 1.38470 * 118.14444 * 180.02562 * 9 8 7 11 11 N 1.38917 * 120.16934 * 180.02562 * 10 9 8 12 12 C 1.36712 * 119.99650 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00076 * 0.02562 * 12 11 10 14 14 C 1.38907 * 120.00076 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99959 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99794 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46702 * 90.00345 * 16 14 12 18 18 H 1.48505 * 109.47037 * 210.00039 * 16 14 12 19 19 H 1.48497 * 109.47095 * 330.00283 * 16 14 12 20 20 C 1.40389 * 119.65277 * 0.02562 * 10 9 8 21 21 N 1.30802 * 121.42492 * 0.02562 * 20 10 9 22 22 C 1.33726 * 121.61043 * 359.95511 * 21 20 10 23 23 C 1.39127 * 120.22920 * 180.02562 * 5 3 2 24 24 H 1.09001 * 109.47217 * 59.99522 * 1 2 3 25 25 H 1.09002 * 109.47600 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46780 * 299.99568 * 1 2 3 27 27 H 1.08007 * 119.30781 * 0.02562 * 6 5 3 28 28 H 1.08002 * 120.92855 * 0.02562 * 9 8 7 29 29 H 0.97002 * 120.00505 * 0.02562 * 11 10 9 30 30 H 0.97006 * 119.99969 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.29215 * 179.97438 * 20 10 9 32 32 H 1.07995 * 120.95392 * 0.26704 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5377 1.2776 0.0006 6 6 4.3083 0.1014 0.0018 7 7 5.6159 0.1435 0.0019 8 6 6.2818 1.3038 0.0014 9 6 7.6877 1.3261 0.0020 10 6 8.3214 2.5573 0.0020 11 7 9.7088 2.6284 0.0020 12 6 10.3308 3.8458 0.0026 13 1 9.7436 4.7523 0.0035 14 6 11.7180 3.9170 0.0021 15 7 12.3163 5.0882 0.0021 16 14 12.7336 2.3492 0.0014 17 1 13.0022 1.9342 -1.3990 18 1 14.0207 2.5929 0.7010 19 1 11.9854 1.2744 0.7014 20 6 7.5545 3.7332 0.0020 21 7 6.2471 3.6947 0.0025 22 6 5.5800 2.5357 0.0021 23 6 4.1744 2.5147 0.0011 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.8103 -0.8570 0.0020 28 1 8.2574 0.4086 0.0024 29 1 10.2362 1.8143 0.0017 30 1 13.2851 5.1379 0.0021 31 1 8.0548 4.6904 0.0025 32 1 3.6051 3.4324 0.0054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187775.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:46 Heat of formation + Delta-G solvation = -31.773610 kcal Electronic energy + Delta-G solvation = -19382.620331 eV Core-core repulsion = 16114.706796 eV Total energy + Delta-G solvation = -3267.913535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.05349 -41.17205 -39.27265 -37.47141 -37.22313 -34.76667 -33.92173 -31.82725 -31.07697 -28.63496 -26.85061 -25.97148 -24.66771 -23.42912 -22.45894 -20.54616 -20.03645 -19.01758 -18.20735 -17.78963 -17.34668 -17.26004 -16.73237 -16.40240 -15.78168 -15.69282 -15.25857 -14.64270 -14.41165 -14.32976 -14.12599 -13.97501 -13.80095 -13.22266 -13.13367 -13.00272 -12.65658 -12.55165 -12.08329 -11.94882 -11.76067 -11.42466 -11.35435 -10.80566 -10.00633 -9.81520 -8.95156 -8.68276 -5.93834 -0.81613 -0.33215 0.83651 1.28270 1.32886 1.35752 1.43961 1.67989 2.05774 2.10830 2.64900 2.85802 3.28009 3.36338 3.52531 3.67120 3.75204 3.85088 3.98572 4.32189 4.37954 4.41237 4.49661 4.64196 4.77629 4.84565 5.07176 5.17863 5.19514 5.31071 5.35346 5.59638 5.82436 6.33743 6.68632 6.85459 6.94951 6.98518 7.07305 8.42741 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.051691 B = 0.003569 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.554073 B = 7842.762766 C = 8369.172070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.530 3.470 4 O -0.543 6.543 5 C -0.242 4.242 6 C 0.203 3.797 7 N -0.516 5.516 8 C 0.160 3.840 9 C -0.246 4.246 10 C 0.167 3.833 11 N -0.534 5.534 12 C -0.321 4.321 13 H 0.108 0.892 14 C 0.006 3.994 15 N -0.889 5.889 16 Si 0.944 3.056 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.243 1.243 20 C 0.097 3.903 21 N -0.441 5.441 22 C -0.053 4.053 23 C 0.060 3.940 24 H 0.062 0.938 25 H 0.138 0.862 26 H 0.062 0.938 27 H 0.199 0.801 28 H 0.142 0.858 29 H 0.395 0.605 30 H 0.289 0.711 31 H 0.167 0.833 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 -11.326 0.013 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.376 3.624 4 O -0.434 6.434 5 C -0.249 4.249 6 C 0.027 3.973 7 N -0.226 5.226 8 C 0.040 3.960 9 C -0.280 4.280 10 C 0.039 3.961 11 N -0.136 5.136 12 C -0.451 4.451 13 H 0.125 0.875 14 C -0.200 4.200 15 N -0.523 5.523 16 Si 0.766 3.234 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.167 1.167 20 C -0.086 4.086 21 N -0.149 5.149 22 C -0.174 4.174 23 C 0.034 3.966 24 H 0.081 0.919 25 H 0.156 0.844 26 H 0.081 0.919 27 H 0.216 0.784 28 H 0.160 0.840 29 H 0.232 0.768 30 H 0.099 0.901 31 H 0.183 0.817 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.537 -10.678 0.016 16.468 hybrid contribution 0.823 -0.108 0.003 0.831 sum -11.713 -10.786 0.019 15.923 Atomic orbital electron populations 1.23612 0.74118 1.06012 1.02610 1.86517 1.25301 1.31021 1.83949 1.20734 0.88229 0.81671 0.71731 1.90810 1.67210 1.37070 1.48352 1.19728 0.90550 0.95356 1.19217 1.23564 0.88476 0.98299 0.86931 1.67996 1.09832 1.27094 1.17705 1.19327 0.94202 0.88927 0.93553 1.20211 0.91798 0.96117 1.19835 1.18736 0.84379 0.94826 0.98161 1.41213 1.02487 1.08191 1.61692 1.19580 0.91646 0.85341 1.48494 0.87490 1.25893 0.97569 1.00998 0.95531 1.69738 1.12003 1.25860 1.44657 0.85598 0.79258 0.78507 0.80080 1.18254 1.19402 1.16657 1.22913 0.88552 0.98030 0.99132 1.67672 1.09354 1.28060 1.09799 1.19245 0.94327 0.90104 1.13686 1.21575 0.91547 0.98070 0.85393 0.91925 0.84432 0.91920 0.78436 0.84000 0.76795 0.90077 0.81659 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.50 9.81 -56.44 -0.55 -8.05 16 3 C 0.53 14.70 7.90 70.29 0.56 15.26 16 4 O -0.54 -17.67 16.17 19.86 0.32 -17.34 16 5 C -0.24 -7.24 5.88 -20.01 -0.12 -7.36 16 6 C 0.20 5.71 10.76 85.42 0.92 6.63 16 7 N -0.52 -17.63 10.30 -187.60 -1.93 -19.56 16 8 C 0.16 6.12 6.61 40.30 0.27 6.38 16 9 C -0.25 -9.27 9.98 22.90 0.23 -9.04 16 10 C 0.17 6.62 6.63 38.60 0.26 6.87 16 11 N -0.53 -21.35 5.22 -184.04 -0.96 -22.31 16 12 C -0.32 -14.64 10.04 84.09 0.84 -13.79 16 13 H 0.11 5.21 5.89 -2.91 -0.02 5.19 16 14 C 0.01 0.25 5.50 84.90 0.47 0.72 16 15 N -0.89 -44.41 13.96 21.66 0.30 -44.10 16 16 Si 0.94 33.75 27.73 68.60 1.90 35.65 16 17 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 18 H -0.27 -9.64 7.11 99.48 0.71 -8.94 16 19 H -0.24 -7.79 6.52 99.48 0.65 -7.15 16 20 C 0.10 3.92 10.46 85.37 0.89 4.82 16 21 N -0.44 -17.80 10.31 -187.87 -1.94 -19.74 16 22 C -0.05 -2.05 6.60 40.30 0.27 -1.78 16 23 C 0.06 2.05 9.67 23.05 0.22 2.27 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.20 4.00 7.59 -2.91 -0.02 3.97 16 28 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 29 H 0.39 14.21 5.76 -92.71 -0.53 13.68 16 30 H 0.29 13.34 8.31 -92.70 -0.77 12.57 16 31 H 0.17 6.58 5.93 -2.91 -0.02 6.56 16 32 H 0.15 4.90 7.70 -2.91 -0.02 4.88 16 Total: -1.00 -56.64 288.47 3.74 -52.90 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.60 Total: 29.97 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.00 Total: 12.59 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -4.53 Total: -105.72 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.23 Total: -25.40 kcal Atomic # 14 Polarization: 33.75 SS G_CDS: 1.90 Total: 35.65 kcal Total: -56.64 3.74 -52.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187775.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.130 kcal (2) G-P(sol) polarization free energy of solvation -56.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds