Wall clock time and date at job start Mon Mar 30 2020 01:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.32860 * 120.00422 * 2 1 4 4 H 1.07996 * 119.99959 * 188.33331 * 3 2 1 5 5 C 1.46725 * 119.99798 * 8.32914 * 3 2 1 6 6 N 1.29367 * 120.00143 * 8.33457 * 5 3 2 7 7 Si 1.86803 * 120.00064 * 188.33089 * 5 3 2 8 8 H 1.48489 * 109.46960 * 90.00328 * 7 5 3 9 9 H 1.48497 * 109.47176 * 210.00515 * 7 5 3 10 10 H 1.48499 * 109.46974 * 330.00181 * 7 5 3 11 11 C 1.38515 * 119.99347 * 179.97438 * 2 1 3 12 12 N 1.31981 * 120.14221 * 85.69455 * 11 2 1 13 13 C 1.32408 * 122.67239 * 180.02562 * 12 11 2 14 14 C 1.36348 * 121.98934 * 359.52825 * 13 12 11 15 15 N 1.48026 * 120.58254 * 180.02562 * 14 13 12 16 16 O 1.31695 * 120.00348 * 141.67081 * 15 14 13 17 17 O 1.31704 * 119.99358 * 321.66781 * 15 14 13 18 18 C 1.40727 * 118.83364 * 0.68056 * 14 13 12 19 19 C 1.40238 * 122.19570 * 179.29806 * 18 14 13 20 20 C 1.36263 * 119.46642 * 180.02562 * 19 18 14 21 21 C 1.39299 * 120.98461 * 0.02562 * 20 19 18 22 22 C 1.36311 * 121.05711 * 359.97438 * 21 20 19 23 23 C 1.40065 * 119.54031 * 0.25235 * 22 21 20 24 24 H 1.08999 * 109.47874 * 174.17560 * 1 2 3 25 25 H 1.09001 * 109.46996 * 294.17780 * 1 2 3 26 26 H 1.08999 * 109.47161 * 54.17164 * 1 2 3 27 27 H 0.97003 * 120.00152 * 179.97438 * 6 5 3 28 28 H 1.08002 * 119.00674 * 180.02562 * 13 12 11 29 29 H 1.08006 * 120.26191 * 359.97438 * 19 18 14 30 30 H 1.08000 * 119.50563 * 179.97438 * 20 19 18 31 31 H 1.08007 * 119.46945 * 179.97438 * 21 20 19 32 32 H 1.07997 * 120.22688 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1294 1.1506 0.0000 4 1 3.2008 1.1554 -0.1356 5 6 1.4074 2.4146 0.1841 6 7 0.1545 2.4029 0.5062 7 14 2.2974 4.0407 -0.0466 8 1 2.1846 4.4700 -1.4636 9 1 1.6851 5.0691 0.8324 10 1 3.7299 3.8756 0.3081 11 6 2.1574 -1.1997 0.0005 12 7 2.4145 -1.8170 -1.1373 13 6 3.0716 -2.9651 -1.1951 14 6 3.5386 -3.5872 -0.0752 15 7 4.2700 -4.8702 -0.1760 16 8 5.3005 -5.1042 0.6099 17 8 3.8901 -5.7776 -1.0517 18 6 3.3010 -2.9951 1.1791 19 6 3.7366 -3.5810 2.3765 20 6 3.4756 -2.9594 3.5606 21 6 2.7824 -1.7517 3.5992 22 6 2.3449 -1.1552 2.4542 23 6 2.5909 -1.7678 1.2189 24 1 -0.3635 -1.0223 -0.1043 25 1 -0.3633 0.4209 0.9375 26 1 -0.3633 0.6015 -0.8332 27 1 -0.3227 3.2386 0.6283 28 1 3.2498 -3.4186 -2.1589 29 1 4.2740 -4.5177 2.3601 30 1 3.8105 -3.4102 4.4832 31 1 2.5886 -1.2805 4.5515 32 1 1.8084 -0.2191 2.4997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166798451.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:25 Heat of formation + Delta-G solvation = 120.557099 kcal Electronic energy + Delta-G solvation = -20494.782428 eV Core-core repulsion = 17233.474448 eV Total energy + Delta-G solvation = -3261.307980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -40.07287 -38.05159 -36.79485 -35.97414 -34.10148 -32.51176 -31.15960 -30.13585 -28.68997 -28.02646 -25.90002 -23.76747 -22.55919 -22.52006 -20.64311 -19.12461 -17.78448 -17.07953 -16.72360 -16.36066 -15.93944 -15.48243 -15.15110 -14.24589 -14.07937 -13.68906 -13.44967 -13.15872 -12.93022 -12.84107 -12.41778 -12.15535 -11.96922 -11.84395 -11.40462 -11.14437 -11.09355 -10.70989 -10.54711 -9.81597 -9.57822 -9.33861 -9.10813 -9.06116 -8.51105 -8.41791 -8.25264 -7.26037 -3.84893 -0.12471 1.54489 2.00394 2.08208 2.17945 2.29700 2.64816 2.77026 3.07199 3.09434 3.62404 3.89963 4.84982 4.99391 5.34903 5.53172 5.67388 5.72458 5.78175 5.85506 5.96295 6.05357 6.14265 6.17419 6.27223 6.47182 6.59160 6.69006 6.91900 7.01704 7.08888 7.32678 7.39674 7.59645 7.77104 7.80787 8.09130 8.27176 8.68356 9.12926 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.005866 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.584831 B = 4772.301738 C = 5300.716420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.352 5.352 3 C -0.015 4.015 4 H 0.152 0.848 5 C -0.009 4.009 6 N -0.691 5.691 7 Si 0.964 3.036 8 H -0.250 1.250 9 H -0.257 1.257 10 H -0.240 1.240 11 C 0.110 3.890 12 N -0.488 5.488 13 C 0.160 3.840 14 C -0.157 4.157 15 N 0.046 4.954 16 O -0.326 6.326 17 O -0.335 6.335 18 C 0.030 3.970 19 C -0.150 4.150 20 C -0.119 4.119 21 C -0.148 4.148 22 C -0.128 4.128 23 C -0.033 4.033 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.321 0.679 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 13.091 2.807 14.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.029 5.029 3 C -0.162 4.162 4 H 0.169 0.831 5 C -0.237 4.237 6 N -0.315 5.315 7 Si 0.781 3.219 8 H -0.174 1.174 9 H -0.181 1.181 10 H -0.163 1.163 11 C -0.119 4.119 12 N -0.207 5.207 13 C -0.016 4.016 14 C -0.267 4.267 15 N 0.458 4.542 16 O -0.474 6.474 17 O -0.481 6.481 18 C 0.026 3.974 19 C -0.170 4.170 20 C -0.139 4.139 21 C -0.167 4.167 22 C -0.150 4.150 23 C -0.037 4.037 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.157 0.843 29 H 0.148 0.852 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.640 13.831 2.146 15.090 hybrid contribution 0.509 -0.216 0.571 0.795 sum -5.131 13.615 2.717 14.801 Atomic orbital electron populations 1.22472 0.77688 1.01287 1.04071 1.41920 1.06456 1.03091 1.51405 1.23776 0.96180 0.83873 1.12408 0.83112 1.28257 0.96301 1.02901 0.96265 1.69129 1.09511 1.34651 1.18177 0.85216 0.80926 0.74753 0.80972 1.17404 1.18051 1.16302 1.16923 1.12926 0.93514 0.88489 1.66800 1.15593 1.09254 1.29031 1.20839 0.93429 0.91408 0.95903 1.19665 1.20107 0.90803 0.96110 1.49445 1.00883 1.02658 1.01260 1.96021 1.18055 1.88980 1.44318 1.96066 1.75327 1.40443 1.36228 1.17317 0.96158 0.92283 0.91666 1.21016 1.02933 1.01599 0.91446 1.20569 1.00114 0.95928 0.97243 1.20483 1.02082 0.96738 0.97443 1.20458 1.02976 1.00171 0.91346 1.18306 0.98144 0.93710 0.93582 0.92109 0.89283 0.90281 0.86369 0.84315 0.85166 0.87357 0.87591 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 90. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 8.95 59.85 0.54 1.90 16 2 N -0.35 -6.29 2.13 -120.52 -0.26 -6.55 16 3 C -0.02 -0.24 9.83 -13.68 -0.13 -0.38 16 4 H 0.15 2.28 7.94 -52.49 -0.42 1.87 16 5 C -0.01 -0.12 5.54 -15.16 -0.08 -0.20 16 6 N -0.69 -8.92 9.78 56.00 0.55 -8.37 16 7 Si 0.96 9.65 29.65 -169.99 -5.04 4.61 16 8 H -0.25 -2.61 7.11 56.52 0.40 -2.21 16 9 H -0.26 -2.52 7.11 56.52 0.40 -2.12 16 10 H -0.24 -2.52 7.11 56.52 0.40 -2.12 16 11 C 0.11 2.35 5.94 -155.04 -0.92 1.43 16 12 N -0.49 -11.14 10.33 -12.42 -0.13 -11.27 16 13 C 0.16 3.84 10.74 -17.98 -0.19 3.64 16 14 C -0.16 -4.04 6.55 -79.68 -0.52 -4.56 16 15 N 0.05 1.29 4.79 34.09 0.16 1.45 16 16 O -0.33 -9.32 17.41 -31.56 -0.55 -9.87 16 17 O -0.33 -9.62 19.72 -31.57 -0.62 -10.24 16 18 C 0.03 0.74 5.74 -106.83 -0.61 0.13 16 19 C -0.15 -3.43 9.25 -39.54 -0.37 -3.80 16 20 C -0.12 -2.31 9.95 -39.90 -0.40 -2.70 16 21 C -0.15 -2.70 9.95 -39.88 -0.40 -3.10 16 22 C -0.13 -2.48 9.55 -39.59 -0.38 -2.85 16 23 C -0.03 -0.72 5.76 -106.69 -0.61 -1.33 16 24 H 0.06 0.99 7.90 -51.93 -0.41 0.58 16 25 H 0.09 1.34 6.71 -51.93 -0.35 0.99 16 26 H 0.08 1.18 7.49 -51.93 -0.39 0.79 16 27 H 0.32 3.45 8.26 -40.82 -0.34 3.11 16 28 H 0.14 3.14 8.02 -52.49 -0.42 2.72 16 29 H 0.13 3.15 5.94 -52.48 -0.31 2.84 16 30 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.11 2.04 7.52 -52.49 -0.39 1.64 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -28.80 288.76 -8.29 -37.09 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -2.67 Total: 10.62 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -4.08 Total: -11.81 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.33 Total: -24.74 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -1.17 Total: -20.12 kcal Atomic # 14 Polarization: 9.65 SS G_CDS: -5.04 Total: 4.61 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.80 -8.29 -37.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798451.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.644 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds