Wall clock time and date at job start Mon Mar 30 2020 01:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.32860 * 120.00422 * 2 1 4 4 H 1.07996 * 119.99959 * 188.33331 * 3 2 1 5 5 C 1.46725 * 119.99798 * 8.32914 * 3 2 1 6 6 N 1.29367 * 120.00143 * 8.33457 * 5 3 2 7 7 Si 1.86803 * 120.00064 * 188.33089 * 5 3 2 8 8 H 1.48489 * 109.46960 * 90.00328 * 7 5 3 9 9 H 1.48497 * 109.47176 * 210.00515 * 7 5 3 10 10 H 1.48499 * 109.46974 * 330.00181 * 7 5 3 11 11 C 1.38515 * 119.99347 * 179.97438 * 2 1 3 12 12 N 1.31981 * 120.14221 * 85.69455 * 11 2 1 13 13 C 1.32408 * 122.67239 * 180.02562 * 12 11 2 14 14 C 1.36348 * 121.98934 * 359.52825 * 13 12 11 15 15 N 1.48026 * 120.58254 * 180.02562 * 14 13 12 16 16 O 1.31695 * 120.00348 * 141.67081 * 15 14 13 17 17 O 1.31704 * 119.99358 * 321.66781 * 15 14 13 18 18 C 1.40727 * 118.83364 * 0.68056 * 14 13 12 19 19 C 1.40238 * 122.19570 * 179.29806 * 18 14 13 20 20 C 1.36263 * 119.46642 * 180.02562 * 19 18 14 21 21 C 1.39299 * 120.98461 * 0.02562 * 20 19 18 22 22 C 1.36311 * 121.05711 * 359.97438 * 21 20 19 23 23 C 1.40065 * 119.54031 * 0.25235 * 22 21 20 24 24 H 1.08999 * 109.47874 * 174.17560 * 1 2 3 25 25 H 1.09001 * 109.46996 * 294.17780 * 1 2 3 26 26 H 1.08999 * 109.47161 * 54.17164 * 1 2 3 27 27 H 0.97003 * 120.00152 * 179.97438 * 6 5 3 28 28 H 1.08002 * 119.00674 * 180.02562 * 13 12 11 29 29 H 1.08006 * 120.26191 * 359.97438 * 19 18 14 30 30 H 1.08000 * 119.50563 * 179.97438 * 20 19 18 31 31 H 1.08007 * 119.46945 * 179.97438 * 21 20 19 32 32 H 1.07997 * 120.22688 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1294 1.1506 0.0000 4 1 3.2008 1.1554 -0.1356 5 6 1.4074 2.4146 0.1841 6 7 0.1545 2.4029 0.5062 7 14 2.2974 4.0407 -0.0466 8 1 2.1846 4.4700 -1.4636 9 1 1.6851 5.0691 0.8324 10 1 3.7299 3.8756 0.3081 11 6 2.1574 -1.1997 0.0005 12 7 2.4145 -1.8170 -1.1373 13 6 3.0716 -2.9651 -1.1951 14 6 3.5386 -3.5872 -0.0752 15 7 4.2700 -4.8702 -0.1760 16 8 5.3005 -5.1042 0.6099 17 8 3.8901 -5.7776 -1.0517 18 6 3.3010 -2.9951 1.1791 19 6 3.7366 -3.5810 2.3765 20 6 3.4756 -2.9594 3.5606 21 6 2.7824 -1.7517 3.5992 22 6 2.3449 -1.1552 2.4542 23 6 2.5909 -1.7678 1.2189 24 1 -0.3635 -1.0223 -0.1043 25 1 -0.3633 0.4209 0.9375 26 1 -0.3633 0.6015 -0.8332 27 1 -0.3227 3.2386 0.6283 28 1 3.2498 -3.4186 -2.1589 29 1 4.2740 -4.5177 2.3601 30 1 3.8105 -3.4102 4.4832 31 1 2.5886 -1.2805 4.5515 32 1 1.8084 -0.2191 2.4997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798451.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:24 Heat of formation + Delta-G solvation = 81.916026 kcal Electronic energy + Delta-G solvation = -20496.458031 eV Core-core repulsion = 17233.474448 eV Total energy + Delta-G solvation = -3262.983583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.97942 -40.13986 -37.80788 -37.18528 -36.04259 -33.16185 -32.62266 -31.71726 -30.27630 -30.07970 -27.52266 -25.35254 -24.14384 -24.03005 -22.32791 -20.94440 -19.66344 -18.54631 -18.16918 -17.70806 -17.33304 -16.85153 -16.66222 -16.01230 -15.39122 -15.09397 -14.85302 -14.57146 -14.51599 -14.47265 -14.01906 -13.56767 -13.44092 -13.36301 -12.73244 -12.65080 -12.17808 -12.07463 -12.02627 -11.58925 -10.73431 -10.47071 -10.38870 -10.38086 -10.33252 -9.98257 -9.82819 -8.90504 -6.10276 -1.18626 -0.02257 0.36973 0.71920 0.88812 1.11763 1.32856 1.70007 1.95127 2.12131 2.31386 2.48583 2.61037 3.30163 3.35251 3.98459 4.01512 4.15527 4.23248 4.26644 4.30206 4.42204 4.48821 4.65115 4.69516 4.84260 5.04051 5.15046 5.21206 5.34086 5.43221 5.47433 5.75136 6.05370 6.11248 6.31544 6.35778 7.18832 7.44108 8.12944 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.005866 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.584831 B = 4772.301738 C = 5300.716420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.256 5.256 3 C 0.310 3.690 4 H 0.227 0.773 5 C -0.042 4.042 6 N -0.566 5.566 7 Si 1.038 2.962 8 H -0.242 1.242 9 H -0.232 1.232 10 H -0.230 1.230 11 C -0.061 4.061 12 N -0.388 5.388 13 C -0.033 4.033 14 C -0.031 4.031 15 N -0.044 5.044 16 O -0.615 6.615 17 O -0.634 6.634 18 C -0.071 4.071 19 C -0.129 4.129 20 C -0.163 4.163 21 C -0.087 4.087 22 C -0.158 4.158 23 C 0.012 3.988 24 H 0.070 0.930 25 H 0.149 0.851 26 H 0.130 0.870 27 H 0.379 0.621 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.165 0.835 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.017 40.199 6.489 43.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N 0.089 4.911 3 C 0.122 3.878 4 H 0.244 0.756 5 C -0.281 4.281 6 N -0.190 5.190 7 Si 0.848 3.152 8 H -0.166 1.166 9 H -0.154 1.154 10 H -0.152 1.152 11 C -0.284 4.284 12 N -0.103 5.103 13 C -0.207 4.207 14 C -0.165 4.165 15 N 0.262 4.738 16 O -0.690 6.690 17 O -0.709 6.709 18 C -0.075 4.075 19 C -0.151 4.151 20 C -0.183 4.183 21 C -0.106 4.106 22 C -0.177 4.177 23 C 0.007 3.993 24 H 0.089 0.911 25 H 0.167 0.833 26 H 0.147 0.853 27 H 0.202 0.798 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.146 0.854 31 H 0.183 0.817 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.543 39.613 5.793 43.318 hybrid contribution 0.951 -2.186 0.068 2.384 sum -15.592 37.428 5.861 40.967 Atomic orbital electron populations 1.23716 0.73339 1.05286 1.08270 1.43827 1.10769 1.04080 1.32404 1.28085 1.02615 0.83317 0.73758 0.75644 1.29984 0.97749 1.02994 0.97333 1.68956 1.08582 1.41234 1.00187 0.84207 0.80394 0.68535 0.82072 1.16569 1.15392 1.15188 1.16465 1.26007 0.96735 0.89144 1.65980 1.08228 1.07282 1.28833 1.19533 1.11869 0.94777 0.94569 1.20183 1.10662 0.88602 0.97102 1.47828 1.09485 1.05007 1.11526 1.95572 1.26457 1.92573 1.54445 1.95620 1.82564 1.45284 1.47388 1.17662 1.01603 0.97054 0.91174 1.21127 1.00429 0.99667 0.93839 1.20806 1.03419 0.98195 0.95845 1.21046 0.96025 0.93746 0.99793 1.20727 1.05284 1.01955 0.89752 1.17857 0.95663 0.91384 0.94357 0.91128 0.83305 0.85264 0.79823 0.88086 0.90484 0.85365 0.81749 0.82181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 8.95 127.77 1.14 1.49 16 2 N -0.26 -4.25 2.13 -535.22 -1.14 -5.39 16 3 C 0.31 1.62 9.83 86.76 0.85 2.48 16 4 H 0.23 0.36 7.94 -2.91 -0.02 0.34 16 5 C -0.04 0.13 5.54 87.27 0.48 0.61 16 6 N -0.57 1.95 9.78 23.25 0.23 2.18 16 7 Si 1.04 -5.76 29.65 68.60 2.03 -3.73 16 8 H -0.24 0.70 7.11 99.48 0.71 1.40 16 9 H -0.23 1.31 7.11 99.48 0.71 2.02 16 10 H -0.23 0.77 7.11 99.48 0.71 1.47 16 11 C -0.06 -2.15 5.94 133.88 0.80 -1.35 16 12 N -0.39 -18.12 10.33 -193.20 -2.00 -20.11 16 13 C -0.03 -2.03 10.74 84.16 0.90 -1.13 16 14 C -0.03 -2.22 6.55 36.54 0.24 -1.98 16 15 N -0.04 -3.88 4.79 -46.06 -0.22 -4.10 16 16 O -0.61 -55.87 17.41 3.52 0.06 -55.81 16 17 O -0.63 -59.08 19.72 3.51 0.07 -59.01 16 18 C -0.07 -4.20 5.74 -21.29 -0.12 -4.32 16 19 C -0.13 -7.61 9.25 22.30 0.21 -7.40 16 20 C -0.16 -6.94 9.95 22.06 0.22 -6.72 16 21 C -0.09 -2.67 9.95 22.08 0.22 -2.45 16 22 C -0.16 -4.60 9.55 22.26 0.21 -4.38 16 23 C 0.01 0.49 5.76 -21.20 -0.12 0.37 16 24 H 0.07 1.25 7.90 -2.39 -0.02 1.23 16 25 H 0.15 0.68 6.71 -2.39 -0.02 0.67 16 26 H 0.13 0.63 7.49 -2.39 -0.02 0.61 16 27 H 0.38 -3.19 8.26 -92.71 -0.77 -3.96 16 28 H 0.10 6.76 8.02 -2.91 -0.02 6.73 16 29 H 0.08 5.45 5.94 -2.91 -0.02 5.43 16 30 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 31 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.16 2.63 7.52 -2.91 -0.02 2.61 16 Total: -1.00 -149.57 288.76 5.24 -144.33 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 1.17 Total: 26.42 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 5.03 Total: -24.77 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: -3.13 Total: -27.43 kcal Atomic # 8 Polarization: -114.95 SS G_CDS: 0.13 Total: -114.82 kcal Atomic # 14 Polarization: -5.76 SS G_CDS: 2.03 Total: -3.73 kcal Total: -149.57 5.24 -144.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798451.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.248 kcal (2) G-P(sol) polarization free energy of solvation -149.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -144.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds