Wall clock time and date at job start Mon Mar 30 2020 01:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.32834 * 120.00393 * 2 1 4 4 H 1.07992 * 119.99847 * 202.99452 * 3 2 1 5 5 C 1.46800 * 119.99525 * 22.99252 * 3 2 1 6 6 N 1.29319 * 120.00265 * 11.14783 * 5 3 2 7 7 Si 1.86800 * 119.99708 * 191.15037 * 5 3 2 8 8 H 1.48499 * 109.47260 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47098 * 119.99775 * 7 5 3 10 10 H 1.48501 * 109.47126 * 239.99839 * 7 5 3 11 11 C 1.38892 * 119.99761 * 180.02562 * 2 1 3 12 12 C 1.40196 * 119.22040 * 189.51431 * 11 2 1 13 13 C 1.36305 * 119.86554 * 180.02562 * 12 11 2 14 14 C 1.40934 * 118.26210 * 359.97438 * 13 12 11 15 15 C 1.40357 * 121.26839 * 180.02562 * 14 13 12 16 16 C 1.36194 * 119.64086 * 179.97438 * 15 14 13 17 17 C 1.39342 * 120.87111 * 0.02562 * 16 15 14 18 18 C 1.36093 * 121.04906 * 359.97438 * 17 16 15 19 19 N 1.48022 * 120.12186 * 180.02562 * 18 17 16 20 20 O 1.31700 * 120.00169 * 359.97438 * 19 18 17 21 21 O 1.31698 * 119.99383 * 179.97438 * 19 18 17 22 22 C 1.40644 * 119.74838 * 0.02562 * 18 17 16 23 23 N 1.31699 * 119.22301 * 9.53488 * 11 2 1 24 24 H 1.09002 * 109.47089 * 273.78405 * 1 2 3 25 25 H 1.09003 * 109.47443 * 33.77720 * 1 2 3 26 26 H 1.08995 * 109.47338 * 153.78331 * 1 2 3 27 27 H 0.97003 * 119.99760 * 179.97438 * 6 5 3 28 28 H 1.08006 * 120.07195 * 359.97438 * 12 11 2 29 29 H 1.07997 * 120.87019 * 179.97438 * 13 12 11 30 30 H 1.07992 * 120.17635 * 359.97438 * 15 14 13 31 31 H 1.08003 * 119.56125 * 179.97438 * 16 15 14 32 32 H 1.07996 * 119.47373 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1292 1.1503 0.0000 4 1 3.1448 1.1874 -0.3654 5 6 1.4827 2.3711 0.4966 6 7 0.3573 2.2954 1.1293 7 14 2.2855 4.0341 0.2146 8 1 3.5573 3.8499 -0.5296 9 1 1.3712 4.8976 -0.5750 10 1 2.5659 4.6767 1.5236 11 6 2.1594 -1.2029 -0.0005 12 6 3.5466 -1.1924 0.2017 13 6 4.2412 -2.3651 0.2032 14 6 3.5281 -3.5634 -0.0012 15 6 4.1798 -4.8064 -0.0113 16 6 3.4579 -5.9439 -0.2114 17 6 2.0793 -5.8906 -0.4070 18 6 1.4152 -4.7027 -0.4033 19 7 -0.0498 -4.6701 -0.6126 20 8 -0.7129 -5.7918 -0.8034 21 8 -0.6900 -3.5192 -0.6081 22 6 2.1261 -3.5064 -0.1999 23 7 1.4992 -2.3263 -0.1914 24 1 -0.3633 0.0678 1.0254 25 1 -0.3634 0.8542 -0.5713 26 1 -0.3634 -0.9219 -0.4540 27 1 -0.0697 3.1021 1.4577 28 1 4.0641 -0.2568 0.3552 29 1 5.3102 -2.3759 0.3570 30 1 5.2479 -4.8606 0.1387 31 1 3.9608 -6.8996 -0.2193 32 1 1.5291 -6.8066 -0.5640 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166798561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:48 Heat of formation + Delta-G solvation = 99.808606 kcal Electronic energy + Delta-G solvation = -20394.279184 eV Core-core repulsion = 17132.071482 eV Total energy + Delta-G solvation = -3262.207702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.13173 -38.20741 -37.08516 -35.44379 -33.17411 -32.97889 -32.50162 -29.85431 -29.15102 -27.14251 -25.58730 -24.54447 -22.89353 -21.68765 -20.72959 -18.98110 -17.42192 -17.18539 -16.69779 -16.55949 -15.55755 -15.26537 -14.80262 -14.54315 -14.20383 -13.92627 -13.63901 -12.93089 -12.87524 -12.63976 -12.45136 -11.84038 -11.69841 -11.38626 -11.16430 -11.06612 -10.96934 -10.80625 -10.04723 -10.00012 -9.91036 -9.79523 -9.42689 -9.24444 -8.28144 -8.03612 -7.66989 -7.32572 -4.21148 0.16660 1.52915 1.74132 2.54587 2.56090 2.61152 2.69543 2.80527 3.26331 3.45924 3.98289 4.07291 4.91346 5.06574 5.18286 5.44675 5.55740 5.64748 5.71885 5.90781 6.02358 6.06741 6.31487 6.39025 6.46162 6.57326 6.65144 6.66891 6.85639 6.89281 6.94613 7.05531 7.24339 7.38780 7.51473 8.19450 8.24145 8.47213 9.21121 9.35657 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.025351 B = 0.005649 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.239730 B = 4955.003207 C = 5977.873131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.303 5.303 3 C -0.297 4.297 4 H 0.126 0.874 5 C 0.044 3.956 6 N -0.764 5.764 7 Si 0.949 3.051 8 H -0.252 1.252 9 H -0.265 1.265 10 H -0.266 1.266 11 C 0.264 3.736 12 C -0.153 4.153 13 C -0.076 4.076 14 C -0.177 4.177 15 C -0.026 4.026 16 C -0.218 4.218 17 C -0.005 4.005 18 C -0.062 4.062 19 N 0.019 4.981 20 O -0.311 6.311 21 O -0.183 6.183 22 C 0.255 3.745 23 N -0.548 5.548 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.301 0.699 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 0.759 0.079 8.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N 0.026 4.974 3 C -0.433 4.433 4 H 0.143 0.857 5 C -0.181 4.181 6 N -0.388 5.388 7 Si 0.771 3.229 8 H -0.175 1.175 9 H -0.189 1.189 10 H -0.191 1.191 11 C 0.019 3.981 12 C -0.175 4.175 13 C -0.100 4.100 14 C -0.183 4.183 15 C -0.047 4.047 16 C -0.240 4.240 17 C -0.025 4.025 18 C -0.161 4.161 19 N 0.466 4.534 20 O -0.465 6.465 21 O -0.370 6.370 22 C 0.109 3.891 23 N -0.274 5.274 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.294 1.231 0.141 7.398 hybrid contribution 0.653 0.738 0.089 0.989 sum 7.947 1.969 0.230 8.190 Atomic orbital electron populations 1.22100 0.77976 1.02465 1.03368 1.42179 1.07334 1.02730 1.45199 1.21473 1.01045 0.83683 1.37053 0.85654 1.27526 0.95414 1.02081 0.93048 1.69025 1.14310 1.33756 1.21725 0.85473 0.80284 0.77505 0.79664 1.17502 1.18933 1.19055 1.18238 0.88513 0.85899 1.05434 1.21257 0.93745 0.98906 1.03561 1.20796 0.98683 0.91058 0.99489 1.18242 0.93105 0.94450 1.12539 1.20942 0.98963 0.91493 0.93277 1.20155 0.92370 0.98610 1.12882 1.20474 0.94720 0.95977 0.91349 1.19350 0.77360 0.94806 1.24606 1.49935 1.03996 1.01869 0.97588 1.96126 1.69309 1.18389 1.62700 1.96210 1.70754 1.13201 1.56799 1.17633 0.88861 0.90002 0.92631 1.67544 1.36498 0.95669 1.27728 0.90692 0.91408 0.89468 0.88592 0.85388 0.85531 0.86024 0.85810 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.83 8.81 59.84 0.53 2.35 16 2 N -0.30 -6.73 3.02 -120.79 -0.36 -7.10 16 3 C -0.30 -6.08 9.05 -13.66 -0.12 -6.20 16 4 H 0.13 2.36 6.47 -52.49 -0.34 2.02 16 5 C 0.04 0.83 5.28 -15.15 -0.08 0.75 16 6 N -0.76 -15.30 10.69 56.00 0.60 -14.70 16 7 Si 0.95 14.24 29.66 -169.99 -5.04 9.20 16 8 H -0.25 -3.71 7.11 56.52 0.40 -3.30 16 9 H -0.26 -3.99 7.11 56.52 0.40 -3.59 16 10 H -0.27 -3.99 7.11 56.52 0.40 -3.59 16 11 C 0.26 5.92 7.30 -155.32 -1.13 4.79 16 12 C -0.15 -2.92 9.12 -39.54 -0.36 -3.28 16 13 C -0.08 -1.30 9.88 -39.26 -0.39 -1.69 16 14 C -0.18 -3.34 5.74 -106.75 -0.61 -3.95 16 15 C -0.03 -0.39 9.77 -39.52 -0.39 -0.78 16 16 C -0.22 -3.32 9.96 -39.91 -0.40 -3.72 16 17 C 0.00 -0.09 9.50 -39.94 -0.38 -0.47 16 18 C -0.06 -1.40 6.90 -79.81 -0.55 -1.95 16 19 N 0.02 0.49 4.98 34.03 0.17 0.66 16 20 O -0.31 -7.80 19.11 -31.57 -0.60 -8.40 16 21 O -0.18 -4.88 17.51 -31.57 -0.55 -5.43 16 22 C 0.26 5.77 6.60 -84.85 -0.56 5.21 16 23 N -0.55 -13.23 6.89 -10.16 -0.07 -13.30 16 24 H 0.07 1.69 7.45 -51.93 -0.39 1.30 16 25 H 0.07 1.42 7.18 -51.93 -0.37 1.05 16 26 H 0.09 2.02 6.71 -51.93 -0.35 1.68 16 27 H 0.30 5.36 8.26 -40.82 -0.34 5.02 16 28 H 0.13 2.19 6.35 -52.48 -0.33 1.85 16 29 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.13 2.26 7.51 -52.49 -0.39 1.87 16 LS Contribution 285.20 15.07 4.30 4.30 Total: -1.00 -27.57 285.20 -8.59 -36.16 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -2.58 Total: 7.56 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -4.45 Total: -8.95 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.33 Total: -34.44 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -1.16 Total: -13.83 kcal Atomic # 14 Polarization: 14.24 SS G_CDS: -5.04 Total: 9.20 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.57 -8.59 -36.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.965 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds