Wall clock time and date at job start Mon Mar 30 2020 01:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.32834 * 120.00393 * 2 1 4 4 H 1.07992 * 119.99847 * 202.99452 * 3 2 1 5 5 C 1.46800 * 119.99525 * 22.99252 * 3 2 1 6 6 N 1.29319 * 120.00265 * 11.14783 * 5 3 2 7 7 Si 1.86800 * 119.99708 * 191.15037 * 5 3 2 8 8 H 1.48499 * 109.47260 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47098 * 119.99775 * 7 5 3 10 10 H 1.48501 * 109.47126 * 239.99839 * 7 5 3 11 11 C 1.38892 * 119.99761 * 180.02562 * 2 1 3 12 12 C 1.40196 * 119.22040 * 189.51431 * 11 2 1 13 13 C 1.36305 * 119.86554 * 180.02562 * 12 11 2 14 14 C 1.40934 * 118.26210 * 359.97438 * 13 12 11 15 15 C 1.40357 * 121.26839 * 180.02562 * 14 13 12 16 16 C 1.36194 * 119.64086 * 179.97438 * 15 14 13 17 17 C 1.39342 * 120.87111 * 0.02562 * 16 15 14 18 18 C 1.36093 * 121.04906 * 359.97438 * 17 16 15 19 19 N 1.48022 * 120.12186 * 180.02562 * 18 17 16 20 20 O 1.31700 * 120.00169 * 359.97438 * 19 18 17 21 21 O 1.31698 * 119.99383 * 179.97438 * 19 18 17 22 22 C 1.40644 * 119.74838 * 0.02562 * 18 17 16 23 23 N 1.31699 * 119.22301 * 9.53488 * 11 2 1 24 24 H 1.09002 * 109.47089 * 273.78405 * 1 2 3 25 25 H 1.09003 * 109.47443 * 33.77720 * 1 2 3 26 26 H 1.08995 * 109.47338 * 153.78331 * 1 2 3 27 27 H 0.97003 * 119.99760 * 179.97438 * 6 5 3 28 28 H 1.08006 * 120.07195 * 359.97438 * 12 11 2 29 29 H 1.07997 * 120.87019 * 179.97438 * 13 12 11 30 30 H 1.07992 * 120.17635 * 359.97438 * 15 14 13 31 31 H 1.08003 * 119.56125 * 179.97438 * 16 15 14 32 32 H 1.07996 * 119.47373 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1292 1.1503 0.0000 4 1 3.1448 1.1874 -0.3654 5 6 1.4827 2.3711 0.4966 6 7 0.3573 2.2954 1.1293 7 14 2.2855 4.0341 0.2146 8 1 3.5573 3.8499 -0.5296 9 1 1.3712 4.8976 -0.5750 10 1 2.5659 4.6767 1.5236 11 6 2.1594 -1.2029 -0.0005 12 6 3.5466 -1.1924 0.2017 13 6 4.2412 -2.3651 0.2032 14 6 3.5281 -3.5634 -0.0012 15 6 4.1798 -4.8064 -0.0113 16 6 3.4579 -5.9439 -0.2114 17 6 2.0793 -5.8906 -0.4070 18 6 1.4152 -4.7027 -0.4033 19 7 -0.0498 -4.6701 -0.6126 20 8 -0.7129 -5.7918 -0.8034 21 8 -0.6900 -3.5192 -0.6081 22 6 2.1261 -3.5064 -0.1999 23 7 1.4992 -2.3263 -0.1914 24 1 -0.3633 0.0678 1.0254 25 1 -0.3634 0.8542 -0.5713 26 1 -0.3634 -0.9219 -0.4540 27 1 -0.0697 3.1021 1.4577 28 1 4.0641 -0.2568 0.3552 29 1 5.3102 -2.3759 0.3570 30 1 5.2479 -4.8606 0.1387 31 1 3.9608 -6.8996 -0.2193 32 1 1.5291 -6.8066 -0.5640 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:40 Heat of formation + Delta-G solvation = 84.472084 kcal Electronic energy + Delta-G solvation = -20394.944226 eV Core-core repulsion = 17132.071482 eV Total energy + Delta-G solvation = -3262.872744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 7.24 seconds Orbital eigenvalues (eV) -41.78848 -40.18184 -37.86051 -36.90441 -35.55019 -33.90696 -33.36531 -31.07637 -30.65486 -29.57147 -27.17287 -25.97246 -24.23706 -23.63816 -21.71721 -20.99131 -19.44292 -18.39224 -18.20392 -17.70500 -17.22483 -16.85001 -16.47733 -16.00735 -15.49285 -15.40557 -14.83710 -14.41569 -14.39129 -14.22718 -13.98079 -13.68337 -13.53711 -13.11420 -12.69673 -12.54966 -12.05530 -11.95634 -11.82110 -11.30761 -11.12964 -10.68679 -10.61419 -10.54408 -10.06144 -9.79531 -9.40697 -8.95907 -5.81333 -1.52817 0.14914 0.38531 0.98387 1.15522 1.52607 1.58117 1.71780 1.97410 2.04180 2.14855 2.33021 3.20608 3.49873 3.51623 3.83671 4.14126 4.15717 4.27631 4.33764 4.45969 4.50450 4.67733 4.70496 4.75399 4.88955 4.99727 5.20331 5.36123 5.42901 5.56208 5.62414 5.83151 5.95219 6.14491 6.42028 6.76670 6.83755 7.51916 7.80551 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.025351 B = 0.005649 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.239730 B = 4955.003207 C = 5977.873131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.264 5.264 3 C 0.064 3.936 4 H 0.231 0.769 5 C -0.021 4.021 6 N -0.654 5.654 7 Si 1.047 2.953 8 H -0.210 1.210 9 H -0.255 1.255 10 H -0.248 1.248 11 C 0.072 3.928 12 C -0.103 4.103 13 C -0.134 4.134 14 C -0.061 4.061 15 C -0.193 4.193 16 C -0.092 4.092 17 C -0.174 4.174 18 C -0.024 4.024 19 N -0.010 5.010 20 O -0.592 6.592 21 O -0.495 6.495 22 C 0.133 3.867 23 N -0.474 5.474 24 H 0.099 0.901 25 H 0.117 0.883 26 H 0.066 0.934 27 H 0.359 0.641 28 H 0.186 0.814 29 H 0.181 0.819 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.357 26.027 3.444 31.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N 0.076 4.924 3 C -0.103 4.103 4 H 0.247 0.753 5 C -0.256 4.256 6 N -0.277 5.277 7 Si 0.857 3.143 8 H -0.131 1.131 9 H -0.179 1.179 10 H -0.172 1.172 11 C -0.159 4.159 12 C -0.123 4.123 13 C -0.158 4.158 14 C -0.064 4.064 15 C -0.215 4.215 16 C -0.115 4.115 17 C -0.196 4.196 18 C -0.148 4.148 19 N 0.318 4.682 20 O -0.675 6.675 21 O -0.591 6.591 22 C -0.015 4.015 23 N -0.200 5.200 24 H 0.117 0.883 25 H 0.135 0.865 26 H 0.085 0.915 27 H 0.177 0.823 28 H 0.203 0.797 29 H 0.199 0.801 30 H 0.180 0.820 31 H 0.166 0.834 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.443 25.785 3.374 30.244 hybrid contribution -1.178 -0.623 0.023 1.333 sum 14.265 25.162 3.396 29.123 Atomic orbital electron populations 1.22677 0.76229 1.04426 1.05437 1.43990 1.09948 1.05614 1.32859 1.26094 1.01808 0.81915 1.00517 0.75312 1.29896 0.96582 1.05480 0.93663 1.68923 1.10637 1.40535 1.07599 0.84092 0.80722 0.68118 0.81387 1.13094 1.17914 1.17197 1.18351 0.90457 0.84878 1.22176 1.21471 0.89822 1.01432 0.99574 1.21188 1.01092 0.89197 1.04284 1.18884 0.90650 0.97476 0.99415 1.20656 1.00425 0.89895 1.10534 1.20561 0.90246 1.00259 1.00443 1.19933 0.96257 0.94356 1.09033 1.19676 0.77862 0.96050 1.21235 1.48592 1.03107 0.99365 1.17186 1.95740 1.71187 1.20777 1.79754 1.95718 1.72616 1.15077 1.75640 1.17811 0.91421 0.88341 1.03923 1.66966 1.39982 0.97870 1.15231 0.88322 0.86496 0.91530 0.82272 0.79734 0.80135 0.82041 0.83428 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 241. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.80 8.81 127.77 1.13 2.93 16 2 N -0.26 -7.61 3.02 -536.08 -1.62 -9.23 16 3 C 0.06 0.95 9.05 86.78 0.79 1.73 16 4 H 0.23 1.04 6.47 -2.91 -0.02 1.02 16 5 C -0.02 -0.23 5.28 87.30 0.46 0.23 16 6 N -0.65 -10.14 10.69 23.26 0.25 -9.89 16 7 Si 1.05 3.17 29.66 68.60 2.03 5.20 16 8 H -0.21 -0.06 7.11 99.48 0.71 0.65 16 9 H -0.26 -1.37 7.11 99.48 0.71 -0.67 16 10 H -0.25 -1.08 7.11 99.48 0.71 -0.37 16 11 C 0.07 2.74 7.30 133.57 0.98 3.71 16 12 C -0.10 -2.80 9.12 22.29 0.20 -2.60 16 13 C -0.13 -4.04 9.88 22.48 0.22 -3.82 16 14 C -0.06 -2.62 5.74 -21.25 -0.12 -2.74 16 15 C -0.19 -7.37 9.77 22.31 0.22 -7.15 16 16 C -0.09 -4.01 9.96 22.06 0.22 -3.79 16 17 C -0.17 -10.11 9.50 22.04 0.21 -9.90 16 18 C -0.02 -1.60 6.90 36.46 0.25 -1.35 16 19 N -0.01 -0.77 4.98 -46.25 -0.23 -1.00 16 20 O -0.59 -49.97 19.11 3.51 0.07 -49.91 16 21 O -0.50 -39.68 17.51 3.52 0.06 -39.62 16 22 C 0.13 7.53 6.60 40.31 0.27 7.80 16 23 N -0.47 -25.76 6.89 -186.05 -1.28 -27.04 16 24 H 0.10 3.30 7.45 -2.39 -0.02 3.28 16 25 H 0.12 2.98 7.18 -2.39 -0.02 2.96 16 26 H 0.07 3.13 6.71 -2.39 -0.02 3.12 16 27 H 0.36 3.69 8.26 -92.71 -0.77 2.92 16 28 H 0.19 2.38 6.35 -2.91 -0.02 2.36 16 29 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 31 H 0.15 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.09 5.43 7.51 -2.91 -0.02 5.41 16 Total: -1.00 -118.21 285.20 5.27 -112.94 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 1.17 Total: 33.49 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.82 Total: -14.95 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -2.88 Total: -47.16 kcal Atomic # 8 Polarization: -89.65 SS G_CDS: 0.13 Total: -89.52 kcal Atomic # 14 Polarization: 3.17 SS G_CDS: 2.03 Total: 5.20 kcal Total: -118.21 5.27 -112.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.409 kcal (2) G-P(sol) polarization free energy of solvation -118.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -112.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.24 seconds