Wall clock time and date at job start Mon Mar 30 2020 01:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.32864 * 119.99550 * 2 1 4 4 H 1.08001 * 119.99488 * 186.81964 * 3 2 1 5 5 C 1.46721 * 120.00525 * 6.82722 * 3 2 1 6 6 N 1.29369 * 120.00243 * 24.71051 * 5 3 2 7 7 Si 1.86800 * 120.00154 * 204.71135 * 5 3 2 8 8 H 1.48501 * 109.47014 * 94.99725 * 7 5 3 9 9 H 1.48503 * 109.47460 * 214.99757 * 7 5 3 10 10 H 1.48500 * 109.47131 * 335.00111 * 7 5 3 11 11 C 1.38502 * 119.99838 * 180.02562 * 2 1 3 12 12 N 1.31982 * 120.14312 * 265.36116 * 11 2 1 13 13 C 1.32416 * 122.66834 * 180.27553 * 12 11 2 14 14 C 1.36334 * 121.99403 * 359.72500 * 13 12 11 15 15 C 1.40737 * 118.83640 * 359.97438 * 14 13 12 16 16 C 1.40233 * 122.19158 * 180.02562 * 15 14 13 17 17 C 1.36259 * 119.46595 * 180.02562 * 16 15 14 18 18 C 1.39307 * 120.98442 * 359.94944 * 17 16 15 19 19 N 1.48011 * 119.47291 * 179.97438 * 18 17 16 20 20 O 1.31703 * 119.99833 * 180.02562 * 19 18 17 21 21 O 1.31695 * 120.00360 * 0.02820 * 19 18 17 22 22 C 1.36314 * 121.05328 * 0.02757 * 18 17 16 23 23 C 1.40063 * 119.54497 * 359.97438 * 22 18 17 24 24 H 1.08997 * 109.46692 * 275.81735 * 1 2 3 25 25 H 1.09001 * 109.46909 * 35.81641 * 1 2 3 26 26 H 1.08993 * 109.47280 * 155.81758 * 1 2 3 27 27 H 0.96996 * 120.00236 * 180.02562 * 6 5 3 28 28 H 1.07999 * 119.00675 * 179.73981 * 13 12 11 29 29 H 1.07996 * 120.58865 * 179.97438 * 14 13 12 30 30 H 1.08004 * 120.26316 * 0.04378 * 16 15 14 31 31 H 1.08004 * 119.51297 * 179.97438 * 17 16 15 32 32 H 1.08003 * 120.22755 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1293 1.1507 0.0000 4 1 3.2036 1.1540 -0.1111 5 6 1.4035 2.4168 0.1510 6 7 0.2535 2.4366 0.7432 7 14 2.1400 4.0004 -0.5117 8 1 1.6041 4.2646 -1.8712 9 1 1.7838 5.1267 0.3883 10 1 3.6177 3.8689 -0.5790 11 6 2.1576 -1.1995 -0.0005 12 7 2.5689 -1.7278 1.1368 13 6 3.2390 -2.8685 1.1940 14 6 3.5469 -3.5823 0.0741 15 6 3.1380 -3.0890 -1.1790 16 6 3.4163 -3.7658 -2.3753 17 6 2.9944 -3.2373 -3.5582 18 6 2.2902 -2.0359 -3.5963 19 7 1.8482 -1.4919 -4.8999 20 8 1.1822 -0.3567 -4.9480 21 8 2.1208 -2.1429 -6.0117 22 6 2.0025 -1.3529 -2.4522 23 6 2.4206 -1.8660 -1.2178 24 1 -0.3632 0.1042 1.0224 25 1 -0.3633 0.8333 -0.6014 26 1 -0.3633 -0.9374 -0.4209 27 1 -0.2265 3.2735 0.8427 28 1 3.5509 -3.2449 2.1571 29 1 4.0949 -4.5100 0.1471 30 1 3.9605 -4.6986 -2.3591 31 1 3.2087 -3.7576 -4.4800 32 1 1.4554 -0.4228 -2.4972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:31 Heat of formation + Delta-G solvation = 111.577361 kcal Electronic energy + Delta-G solvation = -20450.029255 eV Core-core repulsion = 17188.331885 eV Total energy + Delta-G solvation = -3261.697371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.14527 -38.06501 -37.21369 -35.65609 -34.10853 -32.70610 -31.29688 -30.29143 -28.78092 -27.87055 -25.68064 -24.58415 -22.71616 -21.77437 -21.02460 -19.03480 -17.81839 -17.41158 -16.66424 -16.37457 -15.61472 -15.12554 -14.93498 -14.73969 -14.35793 -13.72403 -13.40791 -13.14467 -12.94864 -12.83516 -12.63527 -12.51913 -11.91362 -11.73317 -11.28637 -11.15490 -11.11115 -10.58530 -10.49718 -9.72140 -9.68907 -9.52159 -9.29523 -9.22301 -8.66989 -8.44023 -8.27884 -7.31145 -3.82378 -0.02864 1.06701 2.06307 2.20560 2.35683 2.43585 2.66676 2.90836 2.92543 3.20155 3.62213 3.78270 4.83274 5.12799 5.35746 5.37440 5.59116 5.67425 5.85977 5.88723 5.95990 6.02014 6.06713 6.21211 6.23077 6.46392 6.51771 6.65632 6.73936 6.80031 7.06225 7.24456 7.26675 7.39484 7.68391 7.80307 8.08312 8.41072 8.54549 8.99631 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.007904 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.671014 B = 3541.868776 C = 4979.179562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.360 5.360 3 C -0.041 4.041 4 H 0.149 0.851 5 C -0.002 4.002 6 N -0.693 5.693 7 Si 0.961 3.039 8 H -0.246 1.246 9 H -0.258 1.258 10 H -0.242 1.242 11 C 0.179 3.821 12 N -0.493 5.493 13 C 0.091 3.909 14 C -0.246 4.246 15 C 0.035 3.965 16 C -0.190 4.190 17 C -0.022 4.022 18 C -0.073 4.073 19 N 0.032 4.968 20 O -0.327 6.327 21 O -0.342 6.342 22 C -0.098 4.098 23 C -0.069 4.069 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.321 0.679 28 H 0.133 0.867 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 2.318 7.469 7.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.039 5.039 3 C -0.186 4.186 4 H 0.166 0.834 5 C -0.232 4.232 6 N -0.315 5.315 7 Si 0.778 3.222 8 H -0.169 1.169 9 H -0.182 1.182 10 H -0.164 1.164 11 C -0.054 4.054 12 N -0.206 5.206 13 C -0.076 4.076 14 C -0.270 4.270 15 C 0.026 3.974 16 C -0.212 4.212 17 C -0.042 4.042 18 C -0.176 4.176 19 N 0.441 4.559 20 O -0.475 6.475 21 O -0.486 6.486 22 C -0.125 4.125 23 C -0.076 4.076 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.135 0.865 28 H 0.151 0.849 29 H 0.135 0.865 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.954 2.964 8.381 8.941 hybrid contribution 0.133 0.201 -1.101 1.127 sum 1.087 3.165 7.280 8.012 Atomic orbital electron populations 1.22191 0.77973 1.02065 1.03264 1.41930 1.06604 1.02846 1.52496 1.23646 0.97132 0.82517 1.15270 0.83356 1.28228 0.96109 1.02603 0.96230 1.69055 1.10002 1.33716 1.18769 0.85252 0.81552 0.74868 0.80486 1.16930 1.18199 1.16408 1.17121 1.10268 0.89003 0.88985 1.66763 1.12492 1.12887 1.28474 1.21335 0.96409 0.92318 0.97558 1.21117 1.10486 1.03105 0.92306 1.18001 0.92791 0.92606 0.93952 1.20282 1.08157 1.02245 0.90506 1.20341 0.92737 0.92290 0.98852 1.19161 1.16986 1.00589 0.80905 1.49778 1.01225 1.01511 1.03351 1.96072 1.45979 1.09405 1.96008 1.96059 1.68940 1.62034 1.21548 1.19828 1.02299 1.00909 0.89478 1.18071 1.00975 0.96509 0.91995 0.90247 0.90233 0.91999 0.86500 0.84941 0.86524 0.85691 0.85631 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 9.03 59.85 0.54 2.06 16 2 N -0.36 -6.88 2.12 -120.52 -0.26 -7.13 16 3 C -0.04 -0.72 9.88 -13.68 -0.14 -0.86 16 4 H 0.15 2.48 8.01 -52.49 -0.42 2.06 16 5 C 0.00 -0.03 5.08 -15.16 -0.08 -0.11 16 6 N -0.69 -10.57 10.63 56.00 0.60 -9.98 16 7 Si 0.96 11.88 29.70 -169.99 -5.05 6.83 16 8 H -0.25 -3.30 7.11 56.52 0.40 -2.89 16 9 H -0.26 -3.02 7.11 56.52 0.40 -2.62 16 10 H -0.24 -3.01 7.11 56.52 0.40 -2.61 16 11 C 0.18 3.72 6.00 -155.05 -0.93 2.79 16 12 N -0.49 -10.08 10.33 -12.42 -0.13 -10.21 16 13 C 0.09 1.64 11.06 -17.99 -0.20 1.44 16 14 C -0.25 -4.38 9.88 -39.32 -0.39 -4.77 16 15 C 0.03 0.69 5.75 -106.82 -0.61 0.08 16 16 C -0.19 -3.58 9.82 -39.54 -0.39 -3.97 16 17 C -0.02 -0.46 9.48 -39.90 -0.38 -0.84 16 18 C -0.07 -1.75 6.84 -80.25 -0.55 -2.30 16 19 N 0.03 0.85 4.98 33.82 0.17 1.02 16 20 O -0.33 -9.21 19.08 -31.57 -0.60 -9.81 16 21 O -0.34 -9.45 19.10 -31.57 -0.60 -10.05 16 22 C -0.10 -2.24 9.07 -39.59 -0.36 -2.60 16 23 C -0.07 -1.49 5.76 -106.69 -0.61 -2.10 16 24 H 0.08 1.35 7.76 -51.93 -0.40 0.95 16 25 H 0.08 1.33 6.55 -51.93 -0.34 0.99 16 26 H 0.06 1.07 8.00 -51.93 -0.42 0.65 16 27 H 0.32 4.14 8.26 -40.82 -0.34 3.81 16 28 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 31 H 0.13 2.49 7.52 -52.48 -0.39 2.10 16 32 H 0.13 2.96 7.06 -52.48 -0.37 2.59 16 LS Contribution 292.24 15.07 4.40 4.40 Total: -1.00 -28.41 292.24 -8.31 -36.71 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -2.75 Total: 9.41 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -4.09 Total: -11.18 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.38 Total: -26.30 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -1.21 Total: -19.87 kcal Atomic # 14 Polarization: 11.88 SS G_CDS: -5.05 Total: 6.83 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.41 -8.31 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.290 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds