Wall clock time and date at job start Mon Mar 30 2020 01:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.32864 * 119.99550 * 2 1 4 4 H 1.08001 * 119.99488 * 186.81964 * 3 2 1 5 5 C 1.46721 * 120.00525 * 6.82722 * 3 2 1 6 6 N 1.29369 * 120.00243 * 24.71051 * 5 3 2 7 7 Si 1.86800 * 120.00154 * 204.71135 * 5 3 2 8 8 H 1.48501 * 109.47014 * 94.99725 * 7 5 3 9 9 H 1.48503 * 109.47460 * 214.99757 * 7 5 3 10 10 H 1.48500 * 109.47131 * 335.00111 * 7 5 3 11 11 C 1.38502 * 119.99838 * 180.02562 * 2 1 3 12 12 N 1.31982 * 120.14312 * 265.36116 * 11 2 1 13 13 C 1.32416 * 122.66834 * 180.27553 * 12 11 2 14 14 C 1.36334 * 121.99403 * 359.72500 * 13 12 11 15 15 C 1.40737 * 118.83640 * 359.97438 * 14 13 12 16 16 C 1.40233 * 122.19158 * 180.02562 * 15 14 13 17 17 C 1.36259 * 119.46595 * 180.02562 * 16 15 14 18 18 C 1.39307 * 120.98442 * 359.94944 * 17 16 15 19 19 N 1.48011 * 119.47291 * 179.97438 * 18 17 16 20 20 O 1.31703 * 119.99833 * 180.02562 * 19 18 17 21 21 O 1.31695 * 120.00360 * 0.02820 * 19 18 17 22 22 C 1.36314 * 121.05328 * 0.02757 * 18 17 16 23 23 C 1.40063 * 119.54497 * 359.97438 * 22 18 17 24 24 H 1.08997 * 109.46692 * 275.81735 * 1 2 3 25 25 H 1.09001 * 109.46909 * 35.81641 * 1 2 3 26 26 H 1.08993 * 109.47280 * 155.81758 * 1 2 3 27 27 H 0.96996 * 120.00236 * 180.02562 * 6 5 3 28 28 H 1.07999 * 119.00675 * 179.73981 * 13 12 11 29 29 H 1.07996 * 120.58865 * 179.97438 * 14 13 12 30 30 H 1.08004 * 120.26316 * 0.04378 * 16 15 14 31 31 H 1.08004 * 119.51297 * 179.97438 * 17 16 15 32 32 H 1.08003 * 120.22755 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1293 1.1507 0.0000 4 1 3.2036 1.1540 -0.1111 5 6 1.4035 2.4168 0.1510 6 7 0.2535 2.4366 0.7432 7 14 2.1400 4.0004 -0.5117 8 1 1.6041 4.2646 -1.8712 9 1 1.7838 5.1267 0.3883 10 1 3.6177 3.8689 -0.5790 11 6 2.1576 -1.1995 -0.0005 12 7 2.5689 -1.7278 1.1368 13 6 3.2390 -2.8685 1.1940 14 6 3.5469 -3.5823 0.0741 15 6 3.1380 -3.0890 -1.1790 16 6 3.4163 -3.7658 -2.3753 17 6 2.9944 -3.2373 -3.5582 18 6 2.2902 -2.0359 -3.5963 19 7 1.8482 -1.4919 -4.8999 20 8 1.1822 -0.3567 -4.9480 21 8 2.1208 -2.1429 -6.0117 22 6 2.0025 -1.3529 -2.4522 23 6 2.4206 -1.8660 -1.2178 24 1 -0.3632 0.1042 1.0224 25 1 -0.3633 0.8333 -0.6014 26 1 -0.3633 -0.9374 -0.4209 27 1 -0.2265 3.2735 0.8427 28 1 3.5509 -3.2449 2.1571 29 1 4.0949 -4.5100 0.1471 30 1 3.9605 -4.6986 -2.3591 31 1 3.2087 -3.7576 -4.4800 32 1 1.4554 -0.4228 -2.4972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:30 Heat of formation + Delta-G solvation = 79.005245 kcal Electronic energy + Delta-G solvation = -20451.441688 eV Core-core repulsion = 17188.331885 eV Total energy + Delta-G solvation = -3263.109804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20051 -40.19578 -38.15995 -36.57728 -36.20624 -33.04727 -32.70313 -31.65690 -30.37117 -30.19313 -27.38659 -25.99099 -24.33988 -23.10668 -22.69798 -21.17317 -19.75643 -18.53092 -18.31585 -17.71376 -17.23426 -16.92560 -16.50996 -15.90400 -15.47428 -15.09566 -14.95067 -14.63472 -14.39261 -14.34831 -14.26772 -14.01510 -13.93152 -13.40697 -12.54407 -12.51864 -12.38518 -12.13114 -11.91359 -11.73913 -10.77360 -10.72089 -10.36991 -10.22995 -10.09743 -9.92641 -9.82286 -8.84380 -5.96398 -1.36030 -0.44083 0.42129 0.57179 0.77019 1.09713 1.28103 1.51925 1.74810 2.04589 2.33319 2.46107 2.77305 3.08421 3.36318 3.74902 3.95686 4.04376 4.06635 4.13456 4.23277 4.33174 4.54879 4.59217 4.60848 4.78317 4.84311 5.03621 5.18549 5.21646 5.40225 5.60290 5.77795 6.05226 6.15680 6.24439 6.34682 7.06365 7.56183 8.48811 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.007904 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.671014 B = 3541.868776 C = 4979.179562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.296 5.296 3 C 0.329 3.671 4 H 0.241 0.759 5 C -0.052 4.052 6 N -0.556 5.556 7 Si 1.021 2.979 8 H -0.273 1.273 9 H -0.206 1.206 10 H -0.213 1.213 11 C 0.099 3.901 12 N -0.421 5.421 13 C -0.009 4.009 14 C -0.066 4.066 15 C -0.129 4.129 16 C -0.087 4.087 17 C -0.123 4.123 18 C 0.046 3.954 19 N -0.090 5.090 20 O -0.666 6.666 21 O -0.684 6.684 22 C -0.318 4.318 23 C 0.021 3.979 24 H 0.147 0.853 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.381 0.619 28 H 0.188 0.812 29 H 0.167 0.833 30 H 0.163 0.837 31 H 0.084 0.916 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.861 12.150 32.286 34.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N 0.048 4.952 3 C 0.142 3.858 4 H 0.257 0.743 5 C -0.292 4.292 6 N -0.179 5.179 7 Si 0.830 3.170 8 H -0.198 1.198 9 H -0.127 1.127 10 H -0.134 1.134 11 C -0.131 4.131 12 N -0.131 5.131 13 C -0.167 4.167 14 C -0.087 4.087 15 C -0.139 4.139 16 C -0.110 4.110 17 C -0.144 4.144 18 C -0.085 4.085 19 N 0.203 4.797 20 O -0.735 6.735 21 O -0.751 6.751 22 C -0.345 4.345 23 C 0.014 3.986 24 H 0.164 0.836 25 H 0.131 0.869 26 H 0.096 0.904 27 H 0.203 0.797 28 H 0.205 0.795 29 H 0.184 0.816 30 H 0.180 0.820 31 H 0.102 0.898 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.930 12.448 32.448 34.808 hybrid contribution -0.564 -0.097 -2.688 2.748 sum 1.366 12.351 29.760 32.250 Atomic orbital electron populations 1.23399 0.73509 1.05774 1.07614 1.44038 1.11209 1.05386 1.34572 1.28070 1.02856 0.83536 0.71384 0.74321 1.29824 0.97077 1.02953 0.99370 1.68848 1.04379 1.39649 1.05034 0.84479 0.82747 0.70356 0.79378 1.19804 1.12734 1.13381 1.17188 1.13859 0.92408 0.89606 1.66439 1.07621 1.13141 1.25894 1.21840 1.03532 0.91845 0.99506 1.22123 0.95978 1.00245 0.90368 1.17909 1.04885 0.96123 0.94934 1.20731 1.00654 1.00253 0.89319 1.20317 1.00151 0.95004 0.98907 1.19681 1.07821 0.98365 0.82659 1.47785 1.23926 1.07125 1.00814 1.95460 1.63596 1.18123 1.96344 1.95529 1.85545 1.68405 1.25668 1.18557 1.20922 1.04971 0.90046 1.17778 0.95888 0.94408 0.90502 0.83555 0.86935 0.90379 0.79693 0.79490 0.81553 0.81980 0.89794 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.03 127.77 1.15 1.84 16 2 N -0.30 -6.31 2.12 -535.21 -1.13 -7.44 16 3 C 0.33 3.95 9.88 86.76 0.86 4.81 16 4 H 0.24 1.28 8.01 -2.91 -0.02 1.26 16 5 C -0.05 -0.32 5.08 87.27 0.44 0.12 16 6 N -0.56 -2.88 10.63 23.24 0.25 -2.64 16 7 Si 1.02 4.59 29.70 68.60 2.04 6.63 16 8 H -0.27 -3.64 7.11 99.48 0.71 -2.94 16 9 H -0.21 -0.14 7.11 99.48 0.71 0.57 16 10 H -0.21 -0.85 7.11 99.48 0.71 -0.14 16 11 C 0.10 2.94 6.00 133.88 0.80 3.75 16 12 N -0.42 -10.81 10.33 -193.21 -2.00 -12.80 16 13 C -0.01 -0.21 11.06 84.16 0.93 0.72 16 14 C -0.07 -1.75 9.88 22.44 0.22 -1.53 16 15 C -0.13 -5.04 5.75 -21.29 -0.12 -5.17 16 16 C -0.09 -3.82 9.82 22.29 0.22 -3.60 16 17 C -0.12 -7.39 9.48 22.07 0.21 -7.18 16 18 C 0.05 3.24 6.84 36.19 0.25 3.48 16 19 N -0.09 -7.99 4.98 -46.92 -0.23 -8.23 16 20 O -0.67 -61.17 19.08 3.51 0.07 -61.10 16 21 O -0.68 -65.08 19.10 3.52 0.07 -65.01 16 22 C -0.32 -18.10 9.07 22.26 0.20 -17.90 16 23 C 0.02 0.87 5.76 -21.20 -0.12 0.75 16 24 H 0.15 1.72 7.76 -2.39 -0.02 1.70 16 25 H 0.11 1.90 6.55 -2.39 -0.02 1.88 16 26 H 0.08 1.95 8.00 -2.39 -0.02 1.93 16 27 H 0.38 -0.04 8.26 -92.71 -0.77 -0.80 16 28 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.16 5.39 8.06 -2.91 -0.02 5.36 16 31 H 0.08 5.41 7.52 -2.91 -0.02 5.39 16 32 H 0.08 4.64 7.06 -2.91 -0.02 4.62 16 Total: -1.00 -151.20 292.24 5.26 -145.94 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 1.17 Total: 24.57 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 5.04 Total: -19.92 kcal Atomic # 7 Polarization: -27.99 SS G_CDS: -3.12 Total: -31.10 kcal Atomic # 8 Polarization: -126.25 SS G_CDS: 0.13 Total: -126.11 kcal Atomic # 14 Polarization: 4.59 SS G_CDS: 2.04 Total: 6.63 kcal Total: -151.20 5.26 -145.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.944 kcal (2) G-P(sol) polarization free energy of solvation -151.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -145.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds