Wall clock time and date at job start Mon Mar 30 2020 01:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.32862 * 119.99910 * 2 1 4 4 H 1.07998 * 120.00395 * 186.82570 * 3 2 1 5 5 C 1.46731 * 119.99581 * 6.83159 * 3 2 1 6 6 N 1.29363 * 120.00505 * 24.71380 * 5 3 2 7 7 Si 1.86804 * 119.99647 * 204.70995 * 5 3 2 8 8 H 1.48494 * 109.47074 * 95.00048 * 7 5 3 9 9 H 1.48497 * 109.46953 * 214.99820 * 7 5 3 10 10 H 1.48499 * 109.47536 * 334.99989 * 7 5 3 11 11 C 1.38510 * 120.00041 * 180.02562 * 2 1 3 12 12 N 1.31987 * 120.13873 * 265.07446 * 11 2 1 13 13 C 1.32411 * 122.67057 * 180.02562 * 12 11 2 14 14 C 1.36337 * 121.99336 * 359.97438 * 13 12 11 15 15 C 1.40726 * 118.83316 * 0.02562 * 14 13 12 16 16 C 1.40232 * 122.18796 * 179.97438 * 15 14 13 17 17 C 1.36268 * 119.47003 * 180.02562 * 16 15 14 18 18 N 1.48022 * 119.51094 * 179.97438 * 17 16 15 19 19 O 1.31700 * 119.99528 * 180.02562 * 18 17 16 20 20 O 1.31691 * 119.99808 * 0.02562 * 18 17 16 21 21 C 1.39304 * 120.97633 * 359.97438 * 17 16 15 22 22 C 1.36309 * 121.06308 * 0.02562 * 21 17 16 23 23 C 1.40070 * 119.53641 * 359.97438 * 22 21 17 24 24 H 1.08998 * 109.46720 * 275.80741 * 1 2 3 25 25 H 1.08993 * 109.47437 * 35.81186 * 1 2 3 26 26 H 1.08998 * 109.46810 * 155.81730 * 1 2 3 27 27 H 0.97001 * 120.00146 * 180.02562 * 6 5 3 28 28 H 1.08006 * 119.00359 * 179.72233 * 13 12 11 29 29 H 1.07995 * 120.58454 * 179.97438 * 14 13 12 30 30 H 1.08005 * 120.26801 * 0.02562 * 16 15 14 31 31 H 1.08008 * 119.46772 * 179.97438 * 21 17 16 32 32 H 1.07995 * 120.23146 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1293 1.1506 0.0000 4 1 3.2036 1.1540 -0.1112 5 6 1.4034 2.4168 0.1512 6 7 0.2534 2.4364 0.7434 7 14 2.1399 4.0004 -0.5115 8 1 1.6039 4.2647 -1.8709 9 1 1.7836 5.1266 0.3885 10 1 3.6175 3.8691 -0.5789 11 6 2.1576 -1.1995 -0.0005 12 7 2.5738 -1.7249 1.1364 13 6 3.2400 -2.8678 1.1942 14 6 3.5429 -3.5847 0.0748 15 6 3.1339 -3.0916 -1.1782 16 6 3.4081 -3.7709 -2.3740 17 6 2.9862 -3.2425 -3.5571 18 7 3.2756 -3.9585 -4.8199 19 8 2.8727 -3.4562 -5.9688 20 8 3.9359 -5.0976 -4.7945 21 6 2.2865 -2.0385 -3.5957 22 6 2.0034 -1.3527 -2.4522 23 6 2.4215 -1.8657 -1.2178 24 1 -0.3633 0.1040 1.0224 25 1 -0.3634 0.8333 -0.6013 26 1 -0.3633 -0.9375 -0.4210 27 1 -0.2266 3.2734 0.8429 28 1 3.5566 -3.2414 2.1569 29 1 4.0878 -4.5142 0.1482 30 1 3.9493 -4.7054 -2.3575 31 1 1.9640 -1.6417 -4.5470 32 1 1.4604 -0.4202 -2.4978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166802053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:36 Heat of formation + Delta-G solvation = 117.650902 kcal Electronic energy + Delta-G solvation = -20169.170145 eV Core-core repulsion = 16907.736143 eV Total energy + Delta-G solvation = -3261.434002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.31774 -38.45383 -37.18465 -36.02327 -33.69180 -33.48898 -31.40124 -30.85538 -28.74427 -27.31539 -26.18254 -24.55282 -22.97946 -22.03649 -20.98827 -18.79166 -17.97204 -17.47565 -17.10078 -16.60221 -15.60192 -15.39373 -15.22203 -14.75004 -14.66275 -13.68942 -13.27619 -13.09545 -12.97573 -12.74515 -12.47304 -12.16370 -12.00079 -11.55036 -11.41438 -11.34426 -11.03849 -10.70854 -10.53021 -10.38388 -10.05895 -10.04478 -9.54316 -9.13943 -8.75881 -8.40777 -7.69992 -7.47818 -3.60161 -0.38737 0.83671 1.69199 1.99230 2.34498 2.53660 2.61826 2.65463 3.22417 3.48147 3.73617 4.02508 4.69242 5.04648 5.25915 5.47890 5.54036 5.54968 5.61581 5.80060 5.88597 5.97790 6.16675 6.25688 6.32183 6.41911 6.48980 6.57368 6.59809 6.66288 6.69428 7.05376 7.18907 7.20431 7.44222 7.60585 8.22362 8.63403 9.08245 9.17269 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.005676 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.266693 B = 4931.658916 C = 5828.029312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.419 5.419 3 C -0.149 4.149 4 H 0.124 0.876 5 C 0.007 3.993 6 N -0.751 5.751 7 Si 0.948 3.052 8 H -0.260 1.260 9 H -0.269 1.269 10 H -0.252 1.252 11 C 0.279 3.721 12 N -0.554 5.554 13 C 0.146 3.854 14 C -0.289 4.289 15 C 0.018 3.982 16 C -0.127 4.127 17 C -0.001 4.001 18 N 0.005 4.995 19 O -0.240 6.240 20 O -0.237 6.237 21 C -0.080 4.080 22 C -0.122 4.122 23 C -0.036 4.036 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.302 0.698 28 H 0.134 0.866 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 2.823 1.423 3.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.110 5.110 3 C -0.285 4.285 4 H 0.142 0.858 5 C -0.216 4.216 6 N -0.377 5.377 7 Si 0.770 3.230 8 H -0.185 1.185 9 H -0.193 1.193 10 H -0.176 1.176 11 C 0.047 3.953 12 N -0.276 5.276 13 C -0.008 4.008 14 C -0.317 4.317 15 C 0.012 3.988 16 C -0.152 4.152 17 C -0.093 4.093 18 N 0.457 4.543 19 O -0.415 6.415 20 O -0.413 6.413 21 C -0.100 4.100 22 C -0.146 4.146 23 C -0.041 4.041 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.151 0.849 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.489 3.768 2.687 4.862 hybrid contribution 0.555 -0.029 -1.103 1.235 sum -0.934 3.739 1.584 4.167 Atomic orbital electron populations 1.21761 0.78621 1.00132 1.02510 1.41320 1.05240 1.01499 1.62948 1.22289 0.95376 0.82162 1.28663 0.85826 1.27530 0.96219 1.01133 0.96697 1.69096 1.12143 1.31708 1.24797 0.85466 0.80799 0.77083 0.79659 1.18463 1.19320 1.17565 1.17677 1.02529 0.86942 0.88137 1.67257 1.18584 1.13773 1.27942 1.21622 0.91662 0.90119 0.97369 1.20930 1.14363 1.04461 0.91910 1.17616 0.95559 0.92455 0.93171 1.20165 1.03761 1.02239 0.89039 1.19768 1.11534 0.96725 0.81305 1.50406 0.98382 1.01384 1.04108 1.96167 1.58391 1.70972 1.15978 1.96171 1.41784 1.07394 1.95956 1.20381 0.97205 0.92282 1.00150 1.20568 1.02722 1.01111 0.90160 1.19242 0.96482 0.93736 0.94676 0.91704 0.90873 0.93816 0.88489 0.84910 0.86370 0.84337 0.84644 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 62. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.03 9.03 59.85 0.54 2.57 16 2 N -0.42 -8.30 2.12 -120.52 -0.26 -8.55 16 3 C -0.15 -2.89 9.88 -13.68 -0.14 -3.03 16 4 H 0.12 2.41 8.01 -52.49 -0.42 1.99 16 5 C 0.01 0.12 5.08 -15.16 -0.08 0.04 16 6 N -0.75 -13.64 10.63 56.00 0.60 -13.04 16 7 Si 0.95 13.75 29.70 -169.99 -5.05 8.70 16 8 H -0.26 -3.79 7.11 56.52 0.40 -3.38 16 9 H -0.27 -3.88 7.11 56.52 0.40 -3.48 16 10 H -0.25 -3.73 7.11 56.52 0.40 -3.33 16 11 C 0.28 5.78 6.00 -155.04 -0.93 4.85 16 12 N -0.55 -11.73 10.33 -12.42 -0.13 -11.86 16 13 C 0.15 2.70 11.06 -17.99 -0.20 2.50 16 14 C -0.29 -5.24 9.88 -39.33 -0.39 -5.63 16 15 C 0.02 0.34 5.75 -106.83 -0.61 -0.27 16 16 C -0.13 -2.46 9.33 -39.54 -0.37 -2.83 16 17 C 0.00 -0.02 6.84 -80.26 -0.55 -0.57 16 18 N 0.01 0.11 4.98 33.81 0.17 0.28 16 19 O -0.24 -5.27 19.10 -31.57 -0.60 -5.87 16 20 O -0.24 -5.27 19.08 -31.56 -0.60 -5.87 16 21 C -0.08 -1.47 9.48 -39.88 -0.38 -1.85 16 22 C -0.12 -2.22 9.56 -39.59 -0.38 -2.60 16 23 C -0.04 -0.72 5.76 -106.69 -0.61 -1.33 16 24 H 0.06 1.24 7.76 -51.93 -0.40 0.83 16 25 H 0.07 1.27 6.55 -51.93 -0.34 0.93 16 26 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 27 H 0.30 4.89 8.26 -40.82 -0.34 4.55 16 28 H 0.13 2.04 8.06 -52.48 -0.42 1.62 16 29 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.14 2.53 7.51 -52.48 -0.39 2.14 16 31 H 0.14 2.28 7.53 -52.48 -0.39 1.88 16 32 H 0.14 2.34 7.61 -52.49 -0.40 1.94 16 LS Contribution 292.25 15.07 4.40 4.40 Total: -1.00 -24.22 292.25 -8.31 -32.53 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -2.75 Total: 7.44 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -4.09 Total: -8.16 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.38 Total: -33.18 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -1.21 Total: -11.74 kcal Atomic # 14 Polarization: 13.75 SS G_CDS: -5.05 Total: 8.70 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -24.22 -8.31 -32.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.179 kcal (2) G-P(sol) polarization free energy of solvation -24.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds