Wall clock time and date at job start Mon Mar 30 2020 01:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.32862 * 119.99910 * 2 1 4 4 H 1.07998 * 120.00395 * 186.82570 * 3 2 1 5 5 C 1.46731 * 119.99581 * 6.83159 * 3 2 1 6 6 N 1.29363 * 120.00505 * 24.71380 * 5 3 2 7 7 Si 1.86804 * 119.99647 * 204.70995 * 5 3 2 8 8 H 1.48494 * 109.47074 * 95.00048 * 7 5 3 9 9 H 1.48497 * 109.46953 * 214.99820 * 7 5 3 10 10 H 1.48499 * 109.47536 * 334.99989 * 7 5 3 11 11 C 1.38510 * 120.00041 * 180.02562 * 2 1 3 12 12 N 1.31987 * 120.13873 * 265.07446 * 11 2 1 13 13 C 1.32411 * 122.67057 * 180.02562 * 12 11 2 14 14 C 1.36337 * 121.99336 * 359.97438 * 13 12 11 15 15 C 1.40726 * 118.83316 * 0.02562 * 14 13 12 16 16 C 1.40232 * 122.18796 * 179.97438 * 15 14 13 17 17 C 1.36268 * 119.47003 * 180.02562 * 16 15 14 18 18 N 1.48022 * 119.51094 * 179.97438 * 17 16 15 19 19 O 1.31700 * 119.99528 * 180.02562 * 18 17 16 20 20 O 1.31691 * 119.99808 * 0.02562 * 18 17 16 21 21 C 1.39304 * 120.97633 * 359.97438 * 17 16 15 22 22 C 1.36309 * 121.06308 * 0.02562 * 21 17 16 23 23 C 1.40070 * 119.53641 * 359.97438 * 22 21 17 24 24 H 1.08998 * 109.46720 * 275.80741 * 1 2 3 25 25 H 1.08993 * 109.47437 * 35.81186 * 1 2 3 26 26 H 1.08998 * 109.46810 * 155.81730 * 1 2 3 27 27 H 0.97001 * 120.00146 * 180.02562 * 6 5 3 28 28 H 1.08006 * 119.00359 * 179.72233 * 13 12 11 29 29 H 1.07995 * 120.58454 * 179.97438 * 14 13 12 30 30 H 1.08005 * 120.26801 * 0.02562 * 16 15 14 31 31 H 1.08008 * 119.46772 * 179.97438 * 21 17 16 32 32 H 1.07995 * 120.23146 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1293 1.1506 0.0000 4 1 3.2036 1.1540 -0.1112 5 6 1.4034 2.4168 0.1512 6 7 0.2534 2.4364 0.7434 7 14 2.1399 4.0004 -0.5115 8 1 1.6039 4.2647 -1.8709 9 1 1.7836 5.1266 0.3885 10 1 3.6175 3.8691 -0.5789 11 6 2.1576 -1.1995 -0.0005 12 7 2.5738 -1.7249 1.1364 13 6 3.2400 -2.8678 1.1942 14 6 3.5429 -3.5847 0.0748 15 6 3.1339 -3.0916 -1.1782 16 6 3.4081 -3.7709 -2.3740 17 6 2.9862 -3.2425 -3.5571 18 7 3.2756 -3.9585 -4.8199 19 8 2.8727 -3.4562 -5.9688 20 8 3.9359 -5.0976 -4.7945 21 6 2.2865 -2.0385 -3.5957 22 6 2.0034 -1.3527 -2.4522 23 6 2.4215 -1.8657 -1.2178 24 1 -0.3633 0.1040 1.0224 25 1 -0.3634 0.8333 -0.6013 26 1 -0.3633 -0.9375 -0.4210 27 1 -0.2266 3.2734 0.8429 28 1 3.5566 -3.2414 2.1569 29 1 4.0878 -4.5142 0.1482 30 1 3.9493 -4.7054 -2.3575 31 1 1.9640 -1.6417 -4.5470 32 1 1.4604 -0.4202 -2.4978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166802053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:35 Heat of formation + Delta-G solvation = 79.349099 kcal Electronic energy + Delta-G solvation = -20170.831036 eV Core-core repulsion = 16907.736143 eV Total energy + Delta-G solvation = -3263.094893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.37600 -40.23318 -38.16809 -36.50556 -36.24450 -33.17891 -32.58763 -31.60974 -30.36523 -30.24375 -27.30408 -26.21753 -24.40986 -23.22556 -22.55099 -21.12860 -19.74375 -18.56302 -18.31885 -17.74370 -17.21894 -17.07003 -16.47051 -15.94641 -15.62169 -15.10480 -14.92394 -14.55629 -14.46412 -14.34626 -14.06987 -13.87651 -13.50664 -13.29529 -13.19736 -12.54464 -12.36901 -12.10896 -11.75832 -11.64997 -10.90483 -10.69511 -10.38132 -10.18021 -10.02224 -9.86978 -9.74178 -8.94661 -5.96541 -1.42862 -0.51016 0.38978 0.52939 0.74059 1.05106 1.21705 1.67048 1.90774 2.11567 2.28727 2.44473 2.87268 3.00655 3.34191 3.75000 3.85654 3.88916 4.02906 4.16146 4.22710 4.30609 4.49972 4.58219 4.69542 4.76448 4.79274 4.95305 5.00748 5.25465 5.39746 5.57536 5.73266 6.00848 6.19042 6.30622 6.38744 6.94263 7.66282 8.58853 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.005676 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.266693 B = 4931.658916 C = 5828.029312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.324 5.324 3 C 0.354 3.646 4 H 0.247 0.753 5 C -0.048 4.048 6 N -0.550 5.550 7 Si 1.029 2.971 8 H -0.248 1.248 9 H -0.232 1.232 10 H -0.222 1.222 11 C 0.294 3.706 12 N -0.527 5.527 13 C 0.126 3.874 14 C -0.216 4.216 15 C 0.051 3.949 16 C -0.331 4.331 17 C 0.053 3.947 18 N -0.107 5.107 19 O -0.690 6.690 20 O -0.691 6.691 21 C -0.111 4.111 22 C -0.084 4.084 23 C -0.177 4.177 24 H 0.139 0.861 25 H 0.141 0.859 26 H 0.091 0.909 27 H 0.384 0.616 28 H 0.189 0.811 29 H 0.118 0.882 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 37.068 32.354 50.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N 0.017 4.983 3 C 0.168 3.832 4 H 0.263 0.737 5 C -0.288 4.288 6 N -0.173 5.173 7 Si 0.839 3.161 8 H -0.172 1.172 9 H -0.155 1.155 10 H -0.144 1.144 11 C 0.064 3.936 12 N -0.245 5.245 13 C -0.019 4.019 14 C -0.239 4.239 15 C 0.044 3.956 16 C -0.361 4.361 17 C -0.078 4.078 18 N 0.180 4.820 19 O -0.755 6.755 20 O -0.757 6.757 21 C -0.132 4.132 22 C -0.107 4.107 23 C -0.187 4.187 24 H 0.157 0.843 25 H 0.158 0.842 26 H 0.110 0.890 27 H 0.206 0.794 28 H 0.205 0.795 29 H 0.136 0.864 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.135 36.691 32.575 50.543 hybrid contribution 0.546 -1.779 -2.362 3.007 sum -11.589 34.912 30.213 47.602 Atomic orbital electron populations 1.23667 0.71335 1.07403 1.08616 1.44457 1.12147 1.04585 1.37076 1.28274 1.03068 0.82917 0.68894 0.73667 1.29743 0.97039 1.02250 0.99752 1.68861 1.04660 1.40155 1.03649 0.84286 0.82209 0.69643 0.79955 1.17204 1.15464 1.14391 1.17742 0.98880 0.87808 0.89189 1.66870 1.17235 1.15096 1.25295 1.21895 0.93414 0.88551 0.98082 1.21722 1.06733 1.03126 0.92291 1.17495 0.93510 0.92659 0.91942 1.18843 1.21184 1.04706 0.91355 1.19786 1.08135 0.96652 0.83247 1.47663 1.25852 1.07824 1.00646 1.95443 1.80684 1.78586 1.20759 1.95475 1.64868 1.18937 1.96389 1.20248 0.99707 0.93618 0.99589 1.20383 1.01537 0.99959 0.88833 1.17768 1.09902 0.97997 0.92989 0.84305 0.84160 0.88988 0.79365 0.79456 0.86378 0.92741 0.88849 0.81296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 9.03 127.77 1.15 1.19 16 2 N -0.32 -1.79 2.12 -535.21 -1.13 -2.92 16 3 C 0.35 -1.50 9.88 86.76 0.86 -0.65 16 4 H 0.25 -2.48 8.01 -2.91 -0.02 -2.50 16 5 C -0.05 0.44 5.08 87.28 0.44 0.89 16 6 N -0.55 4.82 10.63 23.25 0.25 5.07 16 7 Si 1.03 -9.32 29.70 68.60 2.04 -7.29 16 8 H -0.25 1.11 7.11 99.48 0.71 1.81 16 9 H -0.23 1.95 7.11 99.48 0.71 2.66 16 10 H -0.22 1.68 7.11 99.48 0.71 2.38 16 11 C 0.29 5.91 6.00 133.88 0.80 6.71 16 12 N -0.53 -11.38 10.33 -193.20 -2.00 -13.37 16 13 C 0.13 3.26 11.06 84.16 0.93 4.19 16 14 C -0.22 -8.18 9.88 22.43 0.22 -7.96 16 15 C 0.05 2.44 5.75 -21.30 -0.12 2.31 16 16 C -0.33 -22.37 9.33 22.30 0.21 -22.16 16 17 C 0.05 3.97 6.84 36.17 0.25 4.22 16 18 N -0.11 -10.21 4.98 -46.94 -0.23 -10.45 16 19 O -0.69 -68.10 19.10 3.51 0.07 -68.03 16 20 O -0.69 -70.88 19.08 3.53 0.07 -70.81 16 21 C -0.11 -6.45 9.48 22.08 0.21 -6.24 16 22 C -0.08 -3.11 9.56 22.26 0.21 -2.90 16 23 C -0.18 -6.25 5.76 -21.20 -0.12 -6.37 16 24 H 0.14 -0.26 7.76 -2.39 -0.02 -0.28 16 25 H 0.14 -0.72 6.55 -2.39 -0.02 -0.73 16 26 H 0.09 0.60 8.00 -2.39 -0.02 0.58 16 27 H 0.38 -4.88 8.26 -92.71 -0.77 -5.65 16 28 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 30 H 0.05 4.13 7.51 -2.91 -0.02 4.11 16 31 H 0.09 5.68 7.53 -2.91 -0.02 5.66 16 32 H 0.17 3.54 7.61 -2.91 -0.02 3.52 16 Total: -1.00 -180.45 292.25 5.26 -175.19 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.17 Total: 19.39 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 5.04 Total: -26.77 kcal Atomic # 7 Polarization: -18.56 SS G_CDS: -3.12 Total: -21.67 kcal Atomic # 8 Polarization: -138.98 SS G_CDS: 0.13 Total: -138.84 kcal Atomic # 14 Polarization: -9.32 SS G_CDS: 2.04 Total: -7.29 kcal Total: -180.45 5.26 -175.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.535 kcal (2) G-P(sol) polarization free energy of solvation -180.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -175.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds