Wall clock time and date at job start Mon Mar 30 2020 01:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46763 * 2 1 4 4 C 1.46496 * 119.99736 * 85.00683 * 3 2 1 5 5 C 1.53002 * 109.47030 * 274.99398 * 4 3 2 6 6 N 1.46506 * 109.47035 * 180.02562 * 5 4 3 7 7 C 1.34944 * 126.03372 * 125.00124 * 6 5 4 8 8 C 1.35317 * 107.74658 * 179.97438 * 7 6 5 9 9 C 1.39871 * 107.91935 * 0.02562 * 8 7 6 10 10 N 1.30845 * 108.20108 * 359.74200 * 9 8 7 11 11 S 1.65593 * 120.00121 * 265.00140 * 3 2 1 12 12 O 1.42097 * 106.40291 * 23.54229 * 11 3 2 13 13 O 1.42101 * 106.40535 * 156.46246 * 11 3 2 14 14 C 1.76199 * 107.22055 * 270.00293 * 11 3 2 15 15 H 1.08003 * 120.00061 * 0.02562 * 14 11 3 16 16 C 1.37879 * 120.00536 * 179.97438 * 14 11 3 17 17 N 1.31523 * 119.99504 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00382 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47159 * 120.00109 * 18 16 14 21 21 H 1.48503 * 109.46720 * 240.00345 * 18 16 14 22 22 H 1.09011 * 109.47170 * 299.99282 * 1 2 3 23 23 H 1.08995 * 109.47812 * 59.99479 * 1 2 3 24 24 H 1.09002 * 109.47399 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46808 * 240.00314 * 2 1 3 26 26 H 1.08995 * 109.47317 * 119.99933 * 2 1 3 27 27 H 1.09004 * 109.47074 * 154.99719 * 4 3 2 28 28 H 1.09004 * 109.47714 * 34.99628 * 4 3 2 29 29 H 1.09004 * 109.46930 * 60.00232 * 5 4 3 30 30 H 1.09000 * 109.47312 * 300.00176 * 5 4 3 31 31 H 1.08001 * 126.12891 * 0.02562 * 7 6 5 32 32 H 1.08002 * 126.04160 * 179.97438 * 8 7 6 33 33 H 1.07995 * 125.90070 * 179.97438 * 9 8 7 34 34 H 0.96995 * 119.99441 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 1.2639 5 6 0.8158 2.7382 1.6414 6 7 0.9560 3.4662 2.9051 7 6 0.6485 4.7637 3.1121 8 6 0.9201 5.0505 4.4063 9 6 1.4108 3.8885 5.0108 10 7 1.4278 2.9368 4.1131 11 16 2.4120 2.1203 -1.4286 12 8 1.6867 1.4416 -2.4447 13 8 2.3055 3.5187 -1.1998 14 6 4.1168 1.7943 -1.7320 15 1 4.6868 1.2033 -1.0304 16 6 4.7229 2.2926 -2.8657 17 7 4.0287 3.0118 -3.7205 18 14 6.5301 1.9463 -3.1877 19 1 7.0802 1.1198 -2.0834 20 1 6.6727 1.2140 -4.4717 21 1 7.2739 3.2293 -3.2643 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.9080 2.8918 1.1513 28 1 2.4690 1.4182 2.0481 29 1 0.0661 1.9550 1.7540 30 1 0.5050 3.4287 0.8573 31 1 0.2554 5.4501 2.3767 32 1 0.7830 6.0077 4.8873 33 1 1.7186 3.7924 6.0415 34 1 4.4552 3.3626 -4.5178 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192962838.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:49 Heat of formation + Delta-G solvation = -10.926648 kcal Electronic energy + Delta-G solvation = -19516.206686 eV Core-core repulsion = 16384.641095 eV Total energy + Delta-G solvation = -3131.565592 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94979 -36.75985 -35.42910 -34.04338 -33.20327 -33.07943 -30.39432 -29.79504 -27.52921 -26.15389 -23.33936 -22.07766 -20.90520 -20.37457 -18.86970 -17.49767 -16.97772 -16.41076 -15.45412 -15.17213 -14.88232 -14.33725 -14.06967 -13.72628 -13.54458 -13.20710 -12.96751 -12.88753 -12.54392 -12.17924 -12.05578 -11.54365 -11.53652 -11.26800 -11.14814 -10.65243 -10.62026 -10.46247 -10.37060 -10.18071 -10.16414 -9.35460 -9.30466 -9.01304 -8.59133 -8.28277 -6.75417 -5.37769 2.02649 2.15031 2.70357 2.97405 3.02447 3.10991 3.18536 4.01190 4.39608 4.58668 4.72929 5.02488 5.10499 5.22611 5.38199 5.48647 5.58409 5.59227 5.68312 5.83234 5.84591 5.95348 5.97635 6.11459 6.16413 6.22571 6.41559 6.57256 6.67032 6.80143 7.14340 7.27539 7.47084 7.84830 7.92717 8.84104 10.18352 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.022289 B = 0.005845 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.933041 B = 4788.909813 C = 5338.701708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.123 3.877 3 N -1.009 6.009 4 C 0.125 3.875 5 C 0.107 3.893 6 N -0.362 5.362 7 C 0.060 3.940 8 C -0.284 4.284 9 C 0.038 3.962 10 N -0.298 5.298 11 S 2.710 3.290 12 O -0.999 6.999 13 O -1.003 7.003 14 C -1.021 5.021 15 H 0.103 0.897 16 C 0.132 3.868 17 N -0.846 5.846 18 Si 0.920 3.080 19 H -0.262 1.262 20 H -0.270 1.270 21 H -0.270 1.270 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.173 0.827 32 H 0.144 0.856 33 H 0.179 0.821 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 -0.699 11.576 12.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.003 4.003 3 N -0.843 5.843 4 C -0.003 4.003 5 C -0.016 4.016 6 N -0.144 5.144 7 C -0.087 4.087 8 C -0.314 4.314 9 C -0.148 4.148 10 N -0.121 5.121 11 S 2.811 3.189 12 O -0.989 6.989 13 O -0.994 6.994 14 C -1.154 5.154 15 H 0.121 0.879 16 C -0.085 4.085 17 N -0.475 5.475 18 Si 0.744 3.256 19 H -0.186 1.186 20 H -0.195 1.195 21 H -0.195 1.195 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.191 0.809 32 H 0.162 0.838 33 H 0.196 0.804 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.272 -1.430 10.507 11.842 hybrid contribution 1.262 0.557 0.093 1.382 sum -4.011 -0.873 10.600 11.367 Atomic orbital electron populations 1.22374 0.97006 1.01897 1.02199 1.21103 0.93736 0.82566 1.02872 1.58113 1.81367 1.22571 1.22242 1.21196 0.95174 0.96716 0.87208 1.22610 1.00831 0.97338 0.80783 1.48739 1.48773 1.08031 1.08841 1.22681 1.00656 0.86907 0.98456 1.21453 1.14704 1.00752 0.94452 1.23825 1.00155 0.91379 0.99411 1.77305 1.20918 1.23170 0.90660 1.00722 0.76351 0.72203 0.69622 1.93365 1.75014 1.75643 1.54877 1.93355 1.89135 1.32352 1.84515 1.30621 1.21228 1.47144 1.16414 0.87883 1.24764 1.00850 0.90041 0.92889 1.69900 1.38368 1.28286 1.10981 0.86131 0.81307 0.79090 0.79071 1.18561 1.19508 1.19533 0.92909 0.91650 0.91975 0.89622 0.91416 0.89421 0.90007 0.89263 0.87843 0.80934 0.83812 0.80370 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 10.02 37.16 0.37 -2.17 16 2 C 0.12 2.02 6.09 -4.04 -0.02 1.99 16 3 N -1.01 -19.68 2.81 -114.38 -0.32 -20.00 16 4 C 0.12 2.18 5.56 -4.04 -0.02 2.16 16 5 C 0.11 1.67 6.62 -4.04 -0.03 1.64 16 6 N -0.36 -5.54 3.68 -61.36 -0.23 -5.76 16 7 C 0.06 0.81 11.45 -17.22 -0.20 0.61 16 8 C -0.28 -3.45 10.80 -40.01 -0.43 -3.88 16 9 C 0.04 0.48 12.03 -17.36 -0.21 0.28 16 10 N -0.30 -4.61 12.42 30.63 0.38 -4.23 16 11 S 2.71 69.78 4.88 -107.50 -0.52 69.25 16 12 O -1.00 -28.04 16.99 -57.17 -0.97 -29.01 16 13 O -1.00 -27.92 16.99 -57.17 -0.97 -28.89 16 14 C -1.02 -27.85 9.75 30.60 0.30 -27.56 16 15 H 0.10 2.61 7.81 -52.48 -0.41 2.20 16 16 C 0.13 3.67 5.46 -17.82 -0.10 3.57 16 17 N -0.85 -24.58 13.19 55.43 0.73 -23.85 16 18 Si 0.92 20.48 29.54 -169.99 -5.02 15.46 16 19 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H 0.05 0.68 5.68 -51.92 -0.29 0.39 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.09 1.49 7.61 -51.93 -0.40 1.09 16 26 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 27 H 0.09 1.68 7.61 -51.93 -0.40 1.28 16 28 H 0.08 1.30 8.00 -51.93 -0.42 0.88 16 29 H 0.09 1.25 5.68 -51.93 -0.29 0.95 16 30 H 0.10 1.65 8.07 -51.93 -0.42 1.23 16 31 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.29 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -34.53 306.81 -6.93 -41.46 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.29 Total: 4.31 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -0.34 Total: -23.35 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.56 Total: -53.84 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -1.94 Total: -57.90 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 69.78 SS G_CDS: -0.52 Total: 69.25 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.53 -6.93 -41.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192962838.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.534 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds