Wall clock time and date at job start Mon Mar 30 2020 01:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46509 * 109.47107 * 2 1 4 4 C 1.46497 * 119.99813 * 274.99658 * 3 2 1 5 5 C 1.50697 * 109.47306 * 275.00263 * 4 3 2 6 6 H 1.07998 * 120.00129 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99881 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00384 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00036 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47012 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47006 * 120.00220 * 9 7 5 12 12 H 1.48495 * 109.47403 * 240.00551 * 9 7 5 13 13 S 1.65596 * 119.99689 * 94.99890 * 3 2 1 14 14 O 1.42104 * 106.39750 * 156.46077 * 13 3 2 15 15 O 1.42095 * 106.40508 * 23.54053 * 13 3 2 16 16 C 1.76200 * 107.21982 * 269.99950 * 13 3 2 17 17 N 1.30502 * 125.64757 * 270.27914 * 16 13 3 18 18 C 1.34127 * 109.25683 * 180.14702 * 17 16 13 19 19 C 1.34672 * 108.01948 * 359.61488 * 18 17 16 20 20 N 1.35041 * 125.65141 * 89.99949 * 16 13 3 21 21 C 1.46499 * 126.39624 * 0.02562 * 20 16 13 22 22 H 1.09003 * 109.46948 * 60.00088 * 1 2 3 23 23 H 1.08991 * 109.47160 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47129 * 300.00110 * 1 2 3 25 25 H 1.08997 * 109.47129 * 239.99890 * 2 1 3 26 26 H 1.09003 * 109.46948 * 119.99912 * 2 1 3 27 27 H 1.09007 * 109.46908 * 35.00205 * 4 3 2 28 28 H 1.09004 * 109.46652 * 154.99809 * 4 3 2 29 29 H 0.96999 * 120.00467 * 179.97438 * 8 7 5 30 30 H 1.08002 * 125.99481 * 179.88589 * 18 17 16 31 31 H 1.07997 * 126.59503 * 180.24939 * 19 18 17 32 32 H 1.09003 * 109.47221 * 270.01947 * 21 20 16 33 33 H 1.09003 * 109.47097 * 30.02049 * 21 20 16 34 34 H 1.09001 * 109.46668 * 150.02021 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1584 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3835 7 6 3.8526 2.3605 -3.0849 8 7 3.0277 3.1854 -3.6920 9 14 5.5095 1.9645 -3.8511 10 1 6.2459 1.0174 -2.9759 11 1 5.3028 1.3463 -5.1854 12 1 6.2969 3.2145 -4.0013 13 16 2.4122 2.1202 1.4287 14 8 3.3284 3.1570 1.1049 15 8 2.7095 1.0800 2.3499 16 6 0.9555 2.9118 2.0254 17 7 0.5867 4.1331 1.7506 18 6 -0.5682 4.3984 2.3789 19 6 -0.9332 3.2969 3.0624 20 7 0.0331 2.3535 2.8384 21 6 0.0615 0.9926 3.3800 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.3618 1.8097 -1.9453 28 1 2.0922 3.1803 -1.0756 29 1 3.2795 3.5879 -4.5379 30 1 -1.1126 5.3304 2.3398 31 1 -1.8183 3.1801 3.6701 32 1 -0.4500 0.3177 2.6938 33 1 1.0961 0.6716 3.5018 34 1 -0.4403 0.9762 4.3475 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193582787.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:46 Heat of formation + Delta-G solvation = -4.268009 kcal Electronic energy + Delta-G solvation = -20129.873239 eV Core-core repulsion = 16998.596388 eV Total energy + Delta-G solvation = -3131.276851 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.01367 -36.94745 -36.16182 -35.33551 -34.01475 -32.66250 -30.11603 -29.75081 -27.12168 -26.62033 -23.21400 -22.37374 -21.58786 -21.45336 -18.51098 -17.65227 -16.90381 -16.34851 -15.88298 -15.66052 -15.45219 -14.61177 -14.23222 -13.97758 -13.67445 -13.60160 -13.02856 -12.91355 -12.84349 -12.15361 -12.06068 -11.77083 -11.48308 -11.35955 -11.20945 -11.02732 -10.89363 -10.52232 -10.45223 -10.05316 -9.99579 -9.76988 -9.67148 -8.84497 -8.40988 -8.15636 -6.02208 -4.06745 0.76739 1.63522 2.65044 2.93667 3.34350 3.42310 3.46426 3.59761 4.13270 4.45788 4.49819 4.66307 4.94245 4.99854 5.22645 5.31731 5.33570 5.49073 5.51543 5.57078 5.62522 5.84921 6.02651 6.16175 6.47844 6.53873 6.65921 6.82064 7.24100 7.40637 7.58148 7.85191 7.93960 8.21839 8.95271 9.58070 11.06592 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.026475 B = 0.006582 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.346398 B = 4252.939452 C = 4452.294440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.113 3.887 3 N -0.970 5.970 4 C 0.254 3.746 5 C -0.529 4.529 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.709 3.291 14 O -0.910 6.910 15 O -0.971 6.971 16 C -0.340 4.340 17 N -0.392 5.392 18 C -0.036 4.036 19 C -0.023 4.023 20 N -0.408 5.408 21 C 0.031 3.969 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 -5.750 12.741 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.013 4.013 3 N -0.811 5.811 4 C 0.132 3.868 5 C -0.569 4.569 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.207 1.207 13 S 2.789 3.211 14 O -0.899 6.899 15 O -0.961 6.961 16 C -0.676 4.676 17 N -0.111 5.111 18 C -0.190 4.190 19 C -0.162 4.162 20 N -0.089 5.089 21 C -0.111 4.111 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.112 0.888 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.195 0.805 31 H 0.199 0.801 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.863 -5.243 12.545 16.231 hybrid contribution -0.685 -0.309 0.037 0.752 sum -9.548 -5.552 12.583 16.743 Atomic orbital electron populations 1.22360 0.97465 1.01573 1.02132 1.21271 0.92955 0.82924 1.04142 1.57486 1.80632 1.20834 1.22142 1.19211 0.97617 0.91822 0.78111 1.21484 1.01935 1.27935 1.05554 0.91932 1.24931 0.97367 0.94774 0.96892 1.69939 1.36039 1.30047 1.17139 0.86452 0.83844 0.78366 0.78840 1.19602 1.21026 1.20745 1.02093 0.72827 0.73333 0.72868 1.93648 1.55972 1.57580 1.82668 1.93437 1.82449 1.56375 1.63827 1.37851 1.18270 1.01860 1.09648 1.70282 1.11304 1.10975 1.18574 1.22682 0.95900 0.99628 1.00767 1.23160 0.96465 0.90629 1.05905 1.45177 1.16829 1.12406 1.34475 1.22870 1.08288 0.79560 1.00383 0.91559 0.91800 0.93910 0.88786 0.90286 0.94405 0.93545 0.92697 0.80464 0.80091 0.89352 0.85641 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.11 1.84 6.40 -4.03 -0.03 1.82 16 3 N -0.97 -20.09 2.77 -115.65 -0.32 -20.41 16 4 C 0.25 6.45 5.10 -5.20 -0.03 6.42 16 5 C -0.53 -14.81 9.38 -34.44 -0.32 -15.13 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 S 2.71 55.91 5.73 -107.50 -0.62 55.29 16 14 O -0.91 -22.97 16.99 -57.17 -0.97 -23.94 16 15 O -0.97 -18.42 13.76 -57.17 -0.79 -19.21 16 16 C -0.34 -6.31 7.94 -90.38 -0.72 -7.03 16 17 N -0.39 -7.77 11.25 -13.85 -0.16 -7.93 16 18 C -0.04 -0.54 11.87 -17.81 -0.21 -0.75 16 19 C -0.02 -0.28 11.58 -16.56 -0.19 -0.47 16 20 N -0.41 -5.79 3.06 -124.99 -0.38 -6.18 16 21 C 0.03 0.31 10.43 59.85 0.62 0.94 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.54 5.55 -51.93 -0.29 0.25 16 25 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 26 H 0.08 1.13 6.91 -51.93 -0.36 0.77 16 27 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 28 H 0.05 1.30 7.61 -51.93 -0.40 0.91 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.18 2.04 8.06 -52.49 -0.42 1.61 16 31 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.09 0.76 6.22 -51.93 -0.32 0.44 16 33 H 0.13 1.48 5.44 -51.93 -0.28 1.20 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 300.71 15.07 4.53 4.53 Total: -1.00 -35.22 300.71 -7.72 -42.94 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -4.15 Total: -1.76 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.59 Total: -14.51 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.12 Total: -60.14 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -1.76 Total: -43.15 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 55.91 SS G_CDS: -0.62 Total: 55.29 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.22 -7.72 -42.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193582787.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.671 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds