Wall clock time and date at job start Mon Mar 30 2020 01:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46509 * 109.47107 * 2 1 4 4 C 1.46497 * 119.99813 * 274.99658 * 3 2 1 5 5 C 1.50697 * 109.47306 * 275.00263 * 4 3 2 6 6 H 1.07998 * 120.00129 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99881 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00384 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00036 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47012 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47006 * 120.00220 * 9 7 5 12 12 H 1.48495 * 109.47403 * 240.00551 * 9 7 5 13 13 S 1.65596 * 119.99689 * 94.99890 * 3 2 1 14 14 O 1.42104 * 106.39750 * 156.46077 * 13 3 2 15 15 O 1.42095 * 106.40508 * 23.54053 * 13 3 2 16 16 C 1.76200 * 107.21982 * 269.99950 * 13 3 2 17 17 N 1.30502 * 125.64757 * 270.27914 * 16 13 3 18 18 C 1.34127 * 109.25683 * 180.14702 * 17 16 13 19 19 C 1.34672 * 108.01948 * 359.61488 * 18 17 16 20 20 N 1.35041 * 125.65141 * 89.99949 * 16 13 3 21 21 C 1.46499 * 126.39624 * 0.02562 * 20 16 13 22 22 H 1.09003 * 109.46948 * 60.00088 * 1 2 3 23 23 H 1.08991 * 109.47160 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47129 * 300.00110 * 1 2 3 25 25 H 1.08997 * 109.47129 * 239.99890 * 2 1 3 26 26 H 1.09003 * 109.46948 * 119.99912 * 2 1 3 27 27 H 1.09007 * 109.46908 * 35.00205 * 4 3 2 28 28 H 1.09004 * 109.46652 * 154.99809 * 4 3 2 29 29 H 0.96999 * 120.00467 * 179.97438 * 8 7 5 30 30 H 1.08002 * 125.99481 * 179.88589 * 18 17 16 31 31 H 1.07997 * 126.59503 * 180.24939 * 19 18 17 32 32 H 1.09003 * 109.47221 * 270.01947 * 21 20 16 33 33 H 1.09003 * 109.47097 * 30.02049 * 21 20 16 34 34 H 1.09001 * 109.46668 * 150.02021 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1584 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3835 7 6 3.8526 2.3605 -3.0849 8 7 3.0277 3.1854 -3.6920 9 14 5.5095 1.9645 -3.8511 10 1 6.2459 1.0174 -2.9759 11 1 5.3028 1.3463 -5.1854 12 1 6.2969 3.2145 -4.0013 13 16 2.4122 2.1202 1.4287 14 8 3.3284 3.1570 1.1049 15 8 2.7095 1.0800 2.3499 16 6 0.9555 2.9118 2.0254 17 7 0.5867 4.1331 1.7506 18 6 -0.5682 4.3984 2.3789 19 6 -0.9332 3.2969 3.0624 20 7 0.0331 2.3535 2.8384 21 6 0.0615 0.9926 3.3800 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.3618 1.8097 -1.9453 28 1 2.0922 3.1803 -1.0756 29 1 3.2795 3.5879 -4.5379 30 1 -1.1126 5.3304 2.3398 31 1 -1.8183 3.1801 3.6701 32 1 -0.4500 0.3177 2.6938 33 1 1.0961 0.6716 3.5018 34 1 -0.4403 0.9762 4.3475 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193582787.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:45 Heat of formation + Delta-G solvation = -30.948104 kcal Electronic energy + Delta-G solvation = -20131.030175 eV Core-core repulsion = 16998.596388 eV Total energy + Delta-G solvation = -3132.433787 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.16000 -38.55728 -37.79094 -37.04466 -35.12650 -34.72408 -31.63154 -30.90434 -28.61072 -28.00034 -25.00277 -23.81836 -23.00716 -22.53474 -19.97272 -19.10656 -18.44428 -18.35081 -17.36505 -16.89719 -16.81694 -16.39614 -15.63233 -15.29817 -15.00152 -14.72286 -14.59015 -14.07158 -13.99349 -13.77603 -13.62965 -13.38179 -13.18010 -12.97891 -12.76477 -12.68355 -12.61247 -12.28569 -12.16563 -11.73277 -11.69040 -11.25550 -10.81709 -10.59683 -10.02276 -9.84020 -8.19119 -6.31954 -0.79137 0.45420 1.40267 1.43666 1.55089 1.63123 1.74349 2.10726 2.42072 2.62132 3.11926 3.18212 3.86375 3.86641 3.92312 4.23989 4.32572 4.36659 4.40603 4.46321 4.60785 4.74545 4.96691 5.00221 5.09736 5.16461 5.36085 5.44622 5.56816 5.70766 5.78717 5.88511 6.08323 6.69722 6.76888 7.36985 8.89621 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.026475 B = 0.006582 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.346398 B = 4252.939452 C = 4452.294440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.102 3.898 3 N -0.978 5.978 4 C 0.274 3.726 5 C -0.547 4.547 6 H 0.060 0.940 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.962 3.038 10 H -0.264 1.264 11 H -0.269 1.269 12 H -0.282 1.282 13 S 2.724 3.276 14 O -0.972 6.972 15 O -0.962 6.962 16 C -0.379 4.379 17 N -0.446 5.446 18 C -0.063 4.063 19 C 0.018 3.982 20 N -0.399 5.399 21 C 0.017 3.983 22 H 0.044 0.956 23 H 0.101 0.899 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.029 0.971 28 H 0.008 0.992 29 H 0.267 0.733 30 H 0.203 0.797 31 H 0.243 0.757 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.901 -7.489 14.494 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.023 4.023 3 N -0.818 5.818 4 C 0.151 3.849 5 C -0.586 4.586 6 H 0.078 0.922 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.786 3.214 10 H -0.188 1.188 11 H -0.194 1.194 12 H -0.207 1.207 13 S 2.809 3.191 14 O -0.962 6.962 15 O -0.952 6.952 16 C -0.717 4.717 17 N -0.167 5.167 18 C -0.217 4.217 19 C -0.123 4.123 20 N -0.080 5.080 21 C -0.123 4.123 22 H 0.063 0.937 23 H 0.120 0.880 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.047 0.953 28 H 0.026 0.974 29 H 0.076 0.924 30 H 0.220 0.780 31 H 0.259 0.741 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.624 -7.070 14.290 19.158 hybrid contribution -0.300 0.240 -0.343 0.516 sum -10.924 -6.830 13.946 18.986 Atomic orbital electron populations 1.22298 0.94976 1.03835 1.01595 1.21612 0.95153 0.80604 1.04893 1.57331 1.81460 1.22457 1.20573 1.18624 0.96356 0.90178 0.79787 1.21841 1.02970 1.27878 1.05945 0.92153 1.25830 1.01137 0.94581 0.97495 1.70050 1.37957 1.30998 1.17665 0.85455 0.79209 0.78220 0.78517 1.18840 1.19361 1.20743 1.01093 0.72828 0.72547 0.72675 1.93567 1.59374 1.59539 1.83681 1.93441 1.82952 1.55766 1.62996 1.36713 1.19413 1.02381 1.13168 1.70180 1.13862 1.12157 1.20509 1.23347 0.95011 1.02048 1.01291 1.24067 0.96341 0.88477 1.03401 1.45467 1.15837 1.13865 1.32823 1.23252 1.08166 0.77752 1.03125 0.93675 0.87997 0.92889 0.89495 0.88034 0.95279 0.97362 0.92386 0.77975 0.74092 0.87271 0.87423 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 10.24 71.98 0.74 -3.49 16 2 C 0.10 3.26 6.40 86.38 0.55 3.82 16 3 N -0.98 -41.77 2.77 -519.82 -1.44 -43.21 16 4 C 0.27 14.68 5.10 85.63 0.44 15.12 16 5 C -0.55 -31.72 9.38 25.60 0.24 -31.48 16 6 H 0.06 3.43 7.81 -2.91 -0.02 3.40 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 9 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 10 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 S 2.72 115.98 5.73 -56.49 -0.32 115.66 16 14 O -0.97 -52.31 16.99 -128.00 -2.17 -54.49 16 15 O -0.96 -36.39 13.76 -128.00 -1.76 -38.15 16 16 C -0.38 -14.04 7.94 180.26 1.43 -12.61 16 17 N -0.45 -17.95 11.25 -197.73 -2.22 -20.17 16 18 C -0.06 -1.77 11.87 83.52 0.99 -0.78 16 19 C 0.02 0.35 11.58 83.09 0.96 1.32 16 20 N -0.40 -10.17 3.06 -549.37 -1.68 -11.86 16 21 C 0.02 0.28 10.43 127.77 1.33 1.61 16 22 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.05 1.20 5.55 -2.39 -0.01 1.19 16 25 H 0.09 2.88 8.11 -2.39 -0.02 2.86 16 26 H 0.10 2.76 6.91 -2.39 -0.02 2.74 16 27 H 0.03 1.58 8.11 -2.38 -0.02 1.56 16 28 H 0.01 0.51 7.61 -2.38 -0.02 0.49 16 29 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.20 4.23 8.06 -2.91 -0.02 4.20 16 31 H 0.24 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.11 1.37 6.22 -2.39 -0.01 1.36 16 33 H 0.11 2.24 5.44 -2.39 -0.01 2.23 16 34 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -82.25 300.71 0.96 -81.29 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.11 Total: 5.21 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 7.14 Total: -25.53 kcal Atomic # 7 Polarization: -126.39 SS G_CDS: -5.06 Total: -131.45 kcal Atomic # 8 Polarization: -88.70 SS G_CDS: -3.94 Total: -92.64 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 115.98 SS G_CDS: -0.32 Total: 115.66 kcal Total: -82.25 0.96 -81.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193582787.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.340 kcal (2) G-P(sol) polarization free energy of solvation -82.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds