Wall clock time and date at job start Mon Mar 30 2020 01:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35629 * 117.00000 * 2 1 4 4 N 1.32311 * 119.54921 * 0.02562 * 3 2 1 5 5 C 1.31706 * 121.86438 * 180.02562 * 4 3 2 6 6 C 1.39655 * 120.71465 * 359.97438 * 5 4 3 7 7 C 1.47651 * 120.48539 * 179.97438 * 6 5 4 8 8 N 1.32921 * 120.25809 * 135.97695 * 7 6 5 9 9 C 1.31992 * 120.08051 * 179.97438 * 8 7 6 10 10 C 1.39211 * 120.59326 * 359.97438 * 9 8 7 11 11 N 1.31605 * 120.51761 * 0.02562 * 10 9 8 12 12 C 1.33976 * 119.90621 * 0.02562 * 11 10 9 13 13 C 1.40736 * 120.29053 * 180.02562 * 12 11 10 14 14 H 1.08009 * 119.99934 * 162.72457 * 13 12 11 15 15 C 1.40147 * 120.00224 * 342.72188 * 13 12 11 16 16 N 1.30699 * 120.00155 * 170.71845 * 15 13 12 17 17 Si 1.86797 * 119.99944 * 350.72332 * 15 13 12 18 18 H 1.48501 * 109.47587 * 84.70901 * 17 15 13 19 19 H 1.48503 * 109.47075 * 204.71050 * 17 15 13 20 20 H 1.48508 * 109.47067 * 324.70791 * 17 15 13 21 21 C 1.40286 * 119.02743 * 0.27471 * 6 5 4 22 22 C 1.38388 * 118.30508 * 359.50517 * 21 6 5 23 23 O 1.35998 * 120.40861 * 180.22434 * 22 21 6 24 24 H 1.09005 * 109.47031 * 299.99516 * 1 2 3 25 25 H 1.08997 * 109.46973 * 59.99192 * 1 2 3 26 26 H 1.08996 * 109.47628 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.64622 * 180.02562 * 5 4 3 28 28 H 1.07992 * 119.70503 * 179.97438 * 9 8 7 29 29 H 1.07995 * 119.73549 * 179.74467 * 10 9 8 30 30 H 0.96995 * 120.00190 * 180.02562 * 16 15 13 31 31 H 1.08003 * 120.84586 * 179.74915 * 21 6 5 32 32 H 0.96697 * 113.99264 * 270.25671 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 7 1.3154 2.3124 0.0005 5 6 1.8655 3.5091 0.0000 6 6 3.2543 3.6558 -0.0005 7 6 3.8655 4.9999 -0.0016 8 7 4.8946 5.2683 0.7958 9 6 5.4387 6.4709 0.7916 10 6 4.9450 7.4689 -0.0440 11 7 3.9272 7.2288 -0.8429 12 6 3.3588 6.0156 -0.8545 13 6 2.2702 5.7498 -1.7060 14 1 1.9929 4.7293 -1.9255 15 6 1.5460 6.8093 -2.2691 16 7 0.6563 6.5725 -3.1968 17 14 1.8523 8.5599 -1.6939 18 1 3.0037 9.1312 -2.4377 19 1 0.6423 9.3829 -1.9466 20 1 2.1544 8.5575 -0.2399 21 6 4.0601 2.5075 -0.0064 22 6 3.4397 1.2705 -0.0010 23 8 4.1795 0.1293 -0.0018 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.2357 4.3865 0.0009 28 1 6.2742 6.6825 1.4422 29 1 5.3981 8.4492 -0.0332 30 1 0.1553 7.3058 -3.5868 31 1 5.1372 2.5868 -0.0110 32 1 4.3928 -0.2004 -0.8854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244843352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:19 Heat of formation + Delta-G solvation = -12.502122 kcal Electronic energy + Delta-G solvation = -20333.975582 eV Core-core repulsion = 17066.897721 eV Total energy + Delta-G solvation = -3267.077861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43140 -39.38931 -37.57519 -36.81387 -34.34135 -33.16298 -32.03223 -30.61952 -28.98401 -26.98005 -26.43259 -23.83410 -22.97047 -22.02938 -21.28974 -18.24382 -18.18537 -17.79948 -16.92453 -16.10565 -15.99355 -15.54232 -15.27006 -14.41800 -14.28809 -14.12723 -13.66724 -13.45030 -13.05566 -12.65673 -12.58132 -12.07184 -11.84499 -11.71536 -11.41307 -11.16716 -11.01750 -10.93569 -10.55931 -9.99238 -9.66096 -9.44133 -9.31372 -9.16818 -8.40117 -7.88719 -7.51458 -7.23972 -5.03441 1.33030 1.56962 2.17872 2.51028 3.22536 3.29081 3.35582 3.35817 4.04518 4.09302 4.27506 4.46633 4.81840 5.06843 5.19345 5.37520 5.49200 5.50977 5.52988 5.62284 5.74031 5.81182 5.96259 6.07434 6.19268 6.42905 6.56183 6.68854 6.81110 6.90932 7.28624 7.41263 7.74279 7.88296 8.03442 8.15218 8.27843 8.71355 9.16734 9.64558 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.006669 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.944881 B = 4197.809730 C = 5322.528060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.278 3.722 4 N -0.523 5.523 5 C 0.155 3.845 6 C -0.050 4.050 7 C -0.001 4.001 8 N -0.402 5.402 9 C -0.110 4.110 10 C 0.112 3.888 11 N -0.534 5.534 12 C 0.206 3.794 13 C -0.384 4.384 14 H 0.110 0.890 15 C 0.080 3.920 16 N -0.772 5.772 17 Si 0.992 3.008 18 H -0.269 1.269 19 H -0.320 1.320 20 H -0.265 1.265 21 C -0.056 4.056 22 C 0.029 3.971 23 O -0.483 6.483 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.174 0.826 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.296 0.704 31 H 0.143 0.857 32 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 -5.207 2.372 5.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.214 6.214 3 C 0.099 3.901 4 N -0.247 5.247 5 C -0.002 4.002 6 C -0.054 4.054 7 C -0.150 4.150 8 N -0.114 5.114 9 C -0.270 4.270 10 C -0.056 4.056 11 N -0.255 5.255 12 C 0.083 3.917 13 C -0.414 4.414 14 H 0.127 0.873 15 C -0.146 4.146 16 N -0.393 5.393 17 Si 0.825 3.175 18 H -0.195 1.195 19 H -0.251 1.251 20 H -0.191 1.191 21 C -0.083 4.083 22 C -0.019 4.019 23 O -0.290 6.290 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.191 0.809 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.106 0.894 31 H 0.160 0.840 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.113 -5.541 2.774 6.198 hybrid contribution 0.886 0.935 -0.473 1.372 sum 0.773 -4.606 2.301 5.207 Atomic orbital electron populations 1.22798 0.77959 1.02243 1.02522 1.86218 1.22276 1.24619 1.88265 1.20382 0.88696 0.85261 0.95787 1.67347 1.39731 0.98445 1.19194 1.22874 0.92498 0.93229 0.91587 1.19045 0.93071 0.91618 1.01618 1.19675 0.99755 0.93959 1.01596 1.67743 1.05977 1.20475 1.17183 1.22528 1.06150 0.90948 1.07373 1.23240 0.92268 0.98952 0.91112 1.67734 1.12076 1.21319 1.24405 1.19174 0.93399 0.87448 0.91696 1.19676 1.06871 0.96878 1.17941 0.87267 1.26505 0.92007 1.04406 0.91724 1.69580 1.15778 1.37206 1.16747 0.84688 0.74930 0.76868 0.81046 1.19498 1.25126 1.19123 1.21803 1.00986 0.89661 0.95837 1.18173 0.86528 0.86847 1.10323 1.84896 1.71963 1.39228 1.32953 0.92502 0.92331 0.89193 0.80870 0.84442 0.84351 0.89361 0.83951 0.76468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 101.05 1.05 1.58 16 2 O -0.31 -5.10 10.26 -33.14 -0.34 -5.44 16 3 C 0.28 5.14 7.51 -16.83 -0.13 5.02 16 4 N -0.52 -10.15 9.18 -12.79 -0.12 -10.27 16 5 C 0.16 3.15 8.81 -17.08 -0.15 3.00 16 6 C -0.05 -1.04 5.26 -104.76 -0.55 -1.59 16 7 C 0.00 -0.03 6.43 -82.12 -0.53 -0.56 16 8 N -0.40 -8.88 10.32 -8.99 -0.09 -8.97 16 9 C -0.11 -2.20 11.22 -17.12 -0.19 -2.39 16 10 C 0.11 2.27 11.22 -17.29 -0.19 2.08 16 11 N -0.53 -12.56 5.41 -10.72 -0.06 -12.62 16 12 C 0.21 4.96 6.14 -84.55 -0.52 4.44 16 13 C -0.38 -9.40 7.78 -37.92 -0.30 -9.69 16 14 H 0.11 2.73 5.98 -52.48 -0.31 2.42 16 15 C 0.08 1.93 5.52 -17.32 -0.10 1.84 16 16 N -0.77 -18.68 13.92 55.56 0.77 -17.90 16 17 Si 0.99 21.96 25.45 -169.99 -4.33 17.63 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.32 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.11 6.69 56.52 0.38 -5.73 16 21 C -0.06 -1.06 9.77 -38.76 -0.38 -1.44 16 22 C 0.03 0.51 6.74 -39.01 -0.26 0.25 16 23 O -0.48 -7.48 13.30 -34.29 -0.46 -7.94 16 24 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 25 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.17 3.57 6.77 -52.49 -0.36 3.21 16 28 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 29 H 0.14 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.30 6.48 8.29 -40.82 -0.34 6.14 16 31 H 0.14 2.55 8.06 -52.48 -0.42 2.13 16 32 H 0.38 4.05 9.06 45.56 0.41 4.46 16 LS Contribution 284.15 15.07 4.28 4.28 Total: -1.00 -28.76 284.15 -4.53 -33.28 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -1.95 Total: 5.42 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.25 Total: 2.53 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.51 Total: -49.76 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.80 Total: -13.38 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.33 Total: 17.63 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.76 -4.53 -33.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244843352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.783 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds