Wall clock time and date at job start Mon Mar 30 2020 01:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35629 * 117.00000 * 2 1 4 4 N 1.32311 * 119.54921 * 0.02562 * 3 2 1 5 5 C 1.31706 * 121.86438 * 180.02562 * 4 3 2 6 6 C 1.39655 * 120.71465 * 359.97438 * 5 4 3 7 7 C 1.47651 * 120.48539 * 179.97438 * 6 5 4 8 8 N 1.32921 * 120.25809 * 135.97695 * 7 6 5 9 9 C 1.31992 * 120.08051 * 179.97438 * 8 7 6 10 10 C 1.39211 * 120.59326 * 359.97438 * 9 8 7 11 11 N 1.31605 * 120.51761 * 0.02562 * 10 9 8 12 12 C 1.33976 * 119.90621 * 0.02562 * 11 10 9 13 13 C 1.40736 * 120.29053 * 180.02562 * 12 11 10 14 14 H 1.08009 * 119.99934 * 162.72457 * 13 12 11 15 15 C 1.40147 * 120.00224 * 342.72188 * 13 12 11 16 16 N 1.30699 * 120.00155 * 170.71845 * 15 13 12 17 17 Si 1.86797 * 119.99944 * 350.72332 * 15 13 12 18 18 H 1.48501 * 109.47587 * 84.70901 * 17 15 13 19 19 H 1.48503 * 109.47075 * 204.71050 * 17 15 13 20 20 H 1.48508 * 109.47067 * 324.70791 * 17 15 13 21 21 C 1.40286 * 119.02743 * 0.27471 * 6 5 4 22 22 C 1.38388 * 118.30508 * 359.50517 * 21 6 5 23 23 O 1.35998 * 120.40861 * 180.22434 * 22 21 6 24 24 H 1.09005 * 109.47031 * 299.99516 * 1 2 3 25 25 H 1.08997 * 109.46973 * 59.99192 * 1 2 3 26 26 H 1.08996 * 109.47628 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.64622 * 180.02562 * 5 4 3 28 28 H 1.07992 * 119.70503 * 179.97438 * 9 8 7 29 29 H 1.07995 * 119.73549 * 179.74467 * 10 9 8 30 30 H 0.96995 * 120.00190 * 180.02562 * 16 15 13 31 31 H 1.08003 * 120.84586 * 179.74915 * 21 6 5 32 32 H 0.96697 * 113.99264 * 270.25671 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 7 1.3154 2.3124 0.0005 5 6 1.8655 3.5091 0.0000 6 6 3.2543 3.6558 -0.0005 7 6 3.8655 4.9999 -0.0016 8 7 4.8946 5.2683 0.7958 9 6 5.4387 6.4709 0.7916 10 6 4.9450 7.4689 -0.0440 11 7 3.9272 7.2288 -0.8429 12 6 3.3588 6.0156 -0.8545 13 6 2.2702 5.7498 -1.7060 14 1 1.9929 4.7293 -1.9255 15 6 1.5460 6.8093 -2.2691 16 7 0.6563 6.5725 -3.1968 17 14 1.8523 8.5599 -1.6939 18 1 3.0037 9.1312 -2.4377 19 1 0.6423 9.3829 -1.9466 20 1 2.1544 8.5575 -0.2399 21 6 4.0601 2.5075 -0.0064 22 6 3.4397 1.2705 -0.0010 23 8 4.1795 0.1293 -0.0018 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.2357 4.3865 0.0009 28 1 6.2742 6.6825 1.4422 29 1 5.3981 8.4492 -0.0332 30 1 0.1553 7.3058 -3.5868 31 1 5.1372 2.5868 -0.0110 32 1 4.3928 -0.2004 -0.8854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244843352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:18 Heat of formation + Delta-G solvation = -34.815970 kcal Electronic energy + Delta-G solvation = -20334.943183 eV Core-core repulsion = 17066.897721 eV Total energy + Delta-G solvation = -3268.045462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90732 -41.02288 -38.90532 -38.17032 -36.09506 -34.82307 -33.69169 -32.13635 -30.45521 -28.30520 -28.06229 -25.39590 -24.47443 -23.68656 -22.83752 -19.92453 -19.59545 -19.19946 -18.49282 -17.72116 -17.46063 -17.06741 -16.81508 -15.87315 -15.75007 -15.50628 -15.11124 -15.07642 -14.77840 -14.17445 -14.08434 -13.62343 -13.54637 -13.12452 -12.91500 -12.80686 -12.54299 -12.27648 -12.09374 -11.68573 -11.44781 -11.12945 -10.86114 -10.64301 -10.00936 -9.56950 -9.07598 -9.01564 -6.81346 -0.21511 0.09316 0.51741 0.81407 1.44513 1.53767 1.59915 2.06072 2.32718 2.51538 2.61845 3.07652 3.32272 3.51303 3.53022 3.93176 4.00891 4.07429 4.19414 4.40409 4.44683 4.49393 4.58323 4.66470 4.75576 4.81842 4.98331 5.09224 5.27963 5.35605 5.62811 5.91985 6.11330 6.30463 6.38224 6.67805 6.83213 7.00542 7.46297 7.91954 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.006669 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.944881 B = 4197.809730 C = 5322.528060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.309 6.309 3 C 0.274 3.726 4 N -0.530 5.530 5 C 0.148 3.852 6 C -0.068 4.068 7 C -0.012 4.012 8 N -0.417 5.417 9 C -0.094 4.094 10 C 0.104 3.896 11 N -0.556 5.556 12 C 0.196 3.804 13 C -0.409 4.409 14 H 0.092 0.908 15 C 0.056 3.944 16 N -0.803 5.803 17 Si 1.037 2.963 18 H -0.273 1.273 19 H -0.310 1.310 20 H -0.279 1.279 21 C -0.055 4.055 22 C 0.040 3.960 23 O -0.483 6.483 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.129 0.871 27 H 0.161 0.839 28 H 0.179 0.821 29 H 0.182 0.818 30 H 0.304 0.696 31 H 0.152 0.848 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -5.554 3.274 6.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.216 6.216 3 C 0.094 3.906 4 N -0.254 5.254 5 C -0.009 4.009 6 C -0.072 4.072 7 C -0.158 4.158 8 N -0.129 5.129 9 C -0.255 4.255 10 C -0.063 4.063 11 N -0.277 5.277 12 C 0.072 3.928 13 C -0.440 4.440 14 H 0.110 0.890 15 C -0.167 4.167 16 N -0.426 5.426 17 Si 0.868 3.132 18 H -0.200 1.200 19 H -0.241 1.241 20 H -0.206 1.206 21 C -0.081 4.081 22 C -0.007 4.007 23 O -0.294 6.294 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.147 0.853 27 H 0.178 0.822 28 H 0.196 0.804 29 H 0.198 0.802 30 H 0.115 0.885 31 H 0.169 0.831 32 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 1.197 -5.918 3.655 7.058 hybrid contribution 0.637 0.915 -0.623 1.278 sum 1.835 -5.003 3.032 6.131 Atomic orbital electron populations 1.23081 0.76079 1.04707 1.02119 1.86223 1.24115 1.23410 1.87875 1.20622 0.89277 0.85556 0.95170 1.67316 1.40078 0.98461 1.19565 1.22665 0.92430 0.93308 0.92491 1.19050 0.93336 0.91664 1.03140 1.19858 1.00017 0.94550 1.01409 1.67846 1.06174 1.21659 1.17248 1.23302 1.05858 0.89937 1.06382 1.23959 0.91237 1.00960 0.90099 1.67716 1.13206 1.21214 1.25583 1.19298 0.93421 0.88274 0.91785 1.19556 1.08315 0.96297 1.19844 0.89027 1.26944 0.91895 1.06139 0.91723 1.69578 1.16975 1.38133 1.17901 0.84045 0.74825 0.74765 0.79516 1.19965 1.24075 1.20579 1.21859 1.01244 0.89481 0.95551 1.18094 0.86541 0.87222 1.08889 1.84831 1.71375 1.38067 1.35098 0.92754 0.92900 0.85314 0.82165 0.80391 0.80158 0.88545 0.83065 0.73631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.38 113.37 1.18 2.03 16 2 O -0.31 -9.79 10.26 -75.51 -0.77 -10.56 16 3 C 0.27 9.91 7.51 84.96 0.64 10.55 16 4 N -0.53 -20.77 9.18 -307.26 -2.82 -23.59 16 5 C 0.15 6.19 8.81 85.05 0.75 6.94 16 6 C -0.07 -2.86 5.26 -19.95 -0.11 -2.97 16 7 C -0.01 -0.55 6.43 42.40 0.27 -0.28 16 8 N -0.42 -17.73 10.32 -182.34 -1.88 -19.62 16 9 C -0.09 -3.47 11.22 84.90 0.95 -2.52 16 10 C 0.10 3.93 11.22 84.96 0.95 4.88 16 11 N -0.56 -25.57 5.41 -187.83 -1.02 -26.58 16 12 C 0.20 9.52 6.14 40.36 0.25 9.77 16 13 C -0.41 -20.74 7.78 23.34 0.18 -20.55 16 14 H 0.09 4.84 5.98 -2.91 -0.02 4.82 16 15 C 0.06 2.76 5.52 85.33 0.47 3.23 16 16 N -0.80 -39.91 13.92 21.86 0.30 -39.61 16 17 Si 1.04 45.32 25.45 68.60 1.75 47.07 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.31 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.28 -12.66 6.69 99.48 0.67 -12.00 16 21 C -0.06 -2.04 9.77 22.80 0.22 -1.81 16 22 C 0.04 1.39 6.74 22.64 0.15 1.54 16 23 O -0.48 -13.80 13.30 -79.61 -1.06 -14.86 16 24 H 0.05 1.37 8.10 -2.38 -0.02 1.35 16 25 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 26 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.16 7.03 6.77 -2.91 -0.02 7.01 16 28 H 0.18 5.04 8.06 -2.91 -0.02 5.01 16 29 H 0.18 5.16 8.06 -2.91 -0.02 5.14 16 30 H 0.30 13.58 8.29 -92.71 -0.77 12.81 16 31 H 0.15 5.23 8.06 -2.91 -0.02 5.20 16 32 H 0.41 7.49 9.06 -74.06 -0.67 6.82 16 Total: -1.00 -61.53 284.15 0.89 -60.65 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.47 Total: 16.29 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 5.91 Total: 10.81 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -5.41 Total: -109.40 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -1.83 Total: -25.42 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.75 Total: 47.07 kcal Total: -61.53 0.89 -60.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244843352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.831 kcal (2) G-P(sol) polarization free energy of solvation -61.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds