Wall clock time and date at job start Mon Mar 30 2020 01:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35651 * 117.00050 * 2 1 4 4 N 1.32302 * 119.55028 * 0.02562 * 3 2 1 5 5 C 1.31723 * 121.85091 * 179.97438 * 4 3 2 6 6 C 1.39628 * 120.72531 * 0.02562 * 5 4 3 7 7 C 1.47818 * 120.48483 * 179.97438 * 6 5 4 8 8 C 1.40502 * 120.79259 * 359.97438 * 7 6 5 9 9 N 1.31561 * 119.08528 * 180.02562 * 8 7 6 10 10 C 1.33678 * 120.83745 * 359.97438 * 9 8 7 11 11 C 1.41004 * 119.12726 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00033 * 9.08330 * 11 10 9 13 13 C 1.40107 * 120.00061 * 189.08816 * 11 10 9 14 14 N 1.30682 * 120.00167 * 196.26445 * 13 11 10 15 15 Si 1.86806 * 119.99905 * 15.98348 * 13 11 10 16 16 H 1.48496 * 109.47201 * 270.27908 * 15 13 11 17 17 H 1.48500 * 109.46740 * 30.28096 * 15 13 11 18 18 H 1.48498 * 109.46970 * 150.27816 * 15 13 11 19 19 N 1.33668 * 121.74323 * 0.28189 * 10 9 8 20 20 C 1.31561 * 120.83197 * 359.43156 * 19 10 9 21 21 C 1.40212 * 119.03849 * 0.24943 * 6 5 4 22 22 C 1.38406 * 118.31047 * 359.50632 * 21 6 5 23 23 O 1.35987 * 120.41330 * 180.24130 * 22 21 6 24 24 H 1.09001 * 109.46560 * 299.99800 * 1 2 3 25 25 H 1.08993 * 109.47047 * 59.99750 * 1 2 3 26 26 H 1.08999 * 109.46456 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.63850 * 179.97438 * 5 4 3 28 28 H 1.07998 * 120.45334 * 0.02562 * 8 7 6 29 29 H 0.97000 * 119.99513 * 354.51940 * 14 13 11 30 30 H 1.08001 * 120.45538 * 180.25772 * 20 19 10 31 31 H 1.07997 * 120.85108 * 179.75341 * 21 6 5 32 32 H 0.96706 * 114.00082 * 270.26410 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 7 1.3156 2.3125 0.0005 5 6 1.8660 3.5093 0.0010 6 6 3.2546 3.6558 0.0005 7 6 3.8666 5.0014 0.0006 8 6 3.0658 6.1558 0.0005 9 7 3.6460 7.3366 0.0001 10 6 4.9783 7.4455 0.0001 11 6 5.5621 8.7290 0.0001 12 1 4.9449 9.6029 0.1477 13 6 6.9427 8.8706 -0.1915 14 7 7.5335 9.9945 0.1179 15 14 7.9405 7.4503 -0.8820 16 1 8.4277 6.5994 0.2332 17 1 7.0866 6.6394 -1.7868 18 1 9.1001 7.9830 -1.6413 19 7 5.7718 6.3698 -0.0050 20 6 5.2630 5.1565 0.0010 21 6 4.0601 2.5082 -0.0059 22 6 3.4399 1.2709 -0.0010 23 8 4.1798 0.1299 -0.0019 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.2364 4.3868 0.0010 28 1 1.9889 6.0749 0.0009 29 1 7.0063 10.7565 0.4048 30 1 5.9098 4.2917 0.0010 31 1 5.1372 2.5875 -0.0104 32 1 4.3935 -0.1995 -0.8857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244845411.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:24 Heat of formation + Delta-G solvation = -39.316757 kcal Electronic energy + Delta-G solvation = -19707.865430 eV Core-core repulsion = 16439.624799 eV Total energy + Delta-G solvation = -3268.240631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87384 -41.07029 -38.91802 -38.17889 -36.10877 -34.40454 -34.20720 -31.98593 -30.68450 -28.57239 -27.35453 -25.64808 -24.37922 -23.69950 -22.65983 -20.73847 -19.60901 -19.17525 -18.57282 -17.74688 -17.24600 -17.13835 -16.38435 -16.04993 -15.65557 -15.38105 -15.27811 -14.99070 -14.74418 -14.40670 -14.15622 -13.99279 -13.51232 -12.94701 -12.82200 -12.56687 -12.26857 -12.22453 -11.96245 -11.64828 -11.30332 -11.04233 -10.89132 -10.62157 -10.21496 -9.69292 -9.41765 -8.99533 -7.00184 -0.33987 0.08807 0.71400 0.79615 1.55652 1.65511 1.97192 2.11226 2.36902 2.43108 2.75861 3.08304 3.37725 3.54898 3.67280 3.76533 3.81530 4.00960 4.04965 4.16511 4.37059 4.46223 4.49492 4.76665 4.79967 4.87551 4.93426 5.21619 5.29794 5.36669 5.43912 5.85818 6.05135 6.16471 6.25791 6.68385 6.75473 6.85705 7.71105 7.78787 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.037511 B = 0.004309 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.273565 B = 6496.713038 C = 7180.906641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.314 6.314 3 C 0.258 3.742 4 N -0.522 5.522 5 C 0.112 3.888 6 C -0.053 4.053 7 C -0.290 4.290 8 C 0.191 3.809 9 N -0.608 5.608 10 C 0.372 3.628 11 C -0.463 4.463 12 H 0.071 0.929 13 C 0.024 3.976 14 N -0.797 5.797 15 Si 1.179 2.821 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.314 1.314 19 N -0.612 5.612 20 C 0.190 3.810 21 C -0.087 4.087 22 C 0.052 3.948 23 O -0.489 6.489 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.122 0.878 27 H 0.179 0.821 28 H 0.180 0.820 29 H 0.288 0.712 30 H 0.177 0.823 31 H 0.161 0.839 32 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 -17.635 -2.485 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.222 6.222 3 C 0.078 3.922 4 N -0.246 5.246 5 C -0.044 4.044 6 C -0.057 4.057 7 C -0.300 4.300 8 C 0.017 3.983 9 N -0.327 5.327 10 C 0.139 3.861 11 C -0.498 4.498 12 H 0.089 0.911 13 C -0.197 4.197 14 N -0.418 5.418 15 Si 1.008 2.992 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.246 1.246 19 N -0.334 5.334 20 C 0.020 3.980 21 C -0.113 4.113 22 C 0.005 3.995 23 O -0.299 6.299 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.140 0.860 27 H 0.196 0.804 28 H 0.196 0.804 29 H 0.099 0.901 30 H 0.193 0.807 31 H 0.179 0.821 32 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -7.116 -17.225 -2.178 18.764 hybrid contribution -1.454 0.518 0.144 1.550 sum -8.569 -16.707 -2.035 18.886 Atomic orbital electron populations 1.23050 0.76133 1.04516 1.02181 1.86237 1.24054 1.23848 1.88047 1.20597 0.89320 0.85520 0.96719 1.67260 1.40144 0.98632 1.18517 1.22737 0.92065 0.93801 0.95806 1.19225 0.93793 0.91563 1.01081 1.19600 0.94762 0.93174 1.22449 1.23506 1.00755 0.86865 0.87128 1.68741 1.12008 1.27864 1.24038 1.19889 0.85601 0.92442 0.88202 1.20541 0.95621 0.92001 1.41637 0.91079 1.28678 0.96799 1.03704 0.90557 1.70607 1.40724 1.03512 1.26942 0.81667 0.71246 0.69605 0.76721 1.20155 1.21325 1.24596 1.67385 1.39470 1.00154 1.26341 1.23340 0.93103 0.94480 0.87122 1.21915 1.01892 0.89589 0.97861 1.18208 0.86597 0.87357 1.07380 1.84841 1.71433 1.38415 1.35243 0.92828 0.92386 0.86001 0.80425 0.80371 0.90076 0.80657 0.82146 0.73397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.81 16 2 O -0.31 -7.72 10.26 -75.76 -0.78 -8.49 16 3 C 0.26 6.96 7.51 84.96 0.64 7.60 16 4 N -0.52 -14.15 9.18 -307.24 -2.82 -16.97 16 5 C 0.11 2.97 10.62 85.05 0.90 3.87 16 6 C -0.05 -1.51 5.90 -19.93 -0.12 -1.63 16 7 C -0.29 -10.16 5.94 -19.64 -0.12 -10.28 16 8 C 0.19 7.19 10.71 85.29 0.91 8.10 16 9 N -0.61 -29.03 10.34 -193.16 -2.00 -31.02 16 10 C 0.37 19.19 7.08 134.87 0.95 20.15 16 11 C -0.46 -25.36 9.72 23.40 0.23 -25.14 16 12 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 13 C 0.02 1.25 5.51 85.32 0.47 1.72 16 14 N -0.80 -41.80 13.65 21.85 0.30 -41.51 16 15 Si 1.18 52.87 25.89 68.60 1.78 54.64 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.29 -12.79 6.56 99.48 0.65 -12.14 16 18 H -0.31 -13.53 7.11 99.48 0.71 -12.83 16 19 N -0.61 -28.80 4.99 -193.16 -0.96 -29.76 16 20 C 0.19 7.26 10.71 85.28 0.91 8.18 16 21 C -0.09 -2.24 9.50 22.79 0.22 -2.02 16 22 C 0.05 1.33 6.74 22.65 0.15 1.48 16 23 O -0.49 -10.63 13.30 -79.50 -1.06 -11.68 16 24 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 25 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 26 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.18 3.91 6.29 -2.91 -0.02 3.89 16 28 H 0.18 5.10 6.35 -2.91 -0.02 5.09 16 29 H 0.29 14.65 8.73 -92.71 -0.81 13.84 16 30 H 0.18 5.24 6.39 -2.91 -0.02 5.22 16 31 H 0.16 3.53 6.40 -2.91 -0.02 3.52 16 32 H 0.41 4.84 9.07 -74.05 -0.67 4.17 16 Total: -1.00 -65.33 284.31 1.22 -64.10 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.43 Total: 6.85 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.33 Total: 13.84 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -5.48 Total: -119.27 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -1.83 Total: -20.18 kcal Atomic # 14 Polarization: 52.87 SS G_CDS: 1.78 Total: 54.64 kcal Total: -65.33 1.22 -64.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244845411.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.788 kcal (2) G-P(sol) polarization free energy of solvation -65.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds