Wall clock time and date at job start Mon Mar 30 2020 01:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 S 1.76203 * 126.03632 * 180.02562 * 5 4 3 7 7 O 1.42097 * 106.40155 * 23.51343 * 6 5 4 8 8 O 1.42098 * 106.40436 * 156.43419 * 6 5 4 9 9 N 1.65598 * 107.21894 * 269.97731 * 6 5 4 10 10 C 1.46507 * 119.99907 * 270.00153 * 9 6 5 11 11 C 1.46498 * 120.00339 * 89.99744 * 9 6 5 12 12 C 1.50707 * 109.47026 * 95.00220 * 11 9 6 13 13 H 1.08000 * 119.99876 * 359.97438 * 12 11 9 14 14 C 1.37872 * 119.99996 * 180.02562 * 12 11 9 15 15 N 1.31515 * 120.00159 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00057 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47223 * 59.99485 * 16 14 12 18 18 H 1.48502 * 109.47210 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47061 * 299.99390 * 16 14 12 20 20 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 21 21 N 1.30844 * 108.19764 * 359.97438 * 20 5 4 22 22 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 23 23 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 24 24 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 26 26 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 27 27 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 28 28 H 1.08988 * 109.47271 * 89.99650 * 10 9 6 29 29 H 1.09002 * 109.46758 * 209.99935 * 10 9 6 30 30 H 1.09011 * 109.46667 * 329.99574 * 10 9 6 31 31 H 1.08995 * 109.47413 * 214.99980 * 11 9 6 32 32 H 1.09002 * 109.47112 * 335.00381 * 11 9 6 33 33 H 0.96996 * 120.00011 * 180.02562 * 15 14 12 34 34 H 1.07995 * 125.89923 * 180.25722 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 16 4.1051 4.3664 1.3873 7 8 5.0660 3.5990 2.0993 8 8 4.4557 5.3607 0.4347 9 7 3.1708 5.1204 2.5279 10 6 2.4476 6.3482 2.1874 11 6 3.0673 4.5596 3.8774 12 6 4.0725 5.2298 4.7783 13 1 4.7236 5.9964 4.3848 14 6 4.1616 4.8636 6.1045 15 7 3.3691 3.9297 6.5835 16 14 5.4081 5.6937 7.2210 17 1 5.1351 7.1526 7.2692 18 1 5.3031 5.1254 8.5889 19 1 6.7766 5.4634 6.6926 20 6 2.3129 3.4723 -0.6000 21 7 1.6811 2.3745 -0.9282 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.3184 1.4127 1.7364 28 1 1.4579 6.0937 1.8086 29 1 2.3474 6.9694 3.0774 30 1 2.9999 6.8949 1.4229 31 1 2.0627 4.7286 4.2650 32 1 3.2679 3.4888 3.8423 33 1 3.4315 3.6723 7.5166 34 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259831835.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:17 Heat of formation + Delta-G solvation = 4.651109 kcal Electronic energy + Delta-G solvation = -19391.701504 eV Core-core repulsion = 16260.811415 eV Total energy + Delta-G solvation = -3130.890089 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19166 -36.45486 -35.42144 -35.01973 -34.64211 -32.40271 -30.57642 -29.55392 -27.72158 -24.99860 -24.15283 -22.26283 -21.72236 -20.80278 -18.35835 -17.51473 -16.59911 -16.42888 -15.68601 -15.56214 -15.19363 -14.53968 -14.32650 -14.05105 -13.39581 -13.20687 -12.93382 -12.82693 -12.36542 -12.18364 -12.11097 -11.82069 -11.51817 -11.34307 -11.24410 -11.10133 -11.00629 -10.65371 -10.47503 -10.33107 -9.99010 -9.72588 -9.55003 -9.07998 -8.42249 -7.98301 -6.04727 -4.08272 1.18680 1.69828 2.37284 2.45153 3.36002 3.39005 3.44140 3.92111 4.25394 4.45584 4.56831 4.64728 4.70270 4.89316 4.92856 5.13312 5.29951 5.33653 5.41841 5.63439 5.75712 5.77566 5.85680 6.10070 6.36906 6.46588 6.62694 6.82336 7.24783 7.43175 7.48515 7.64377 7.93438 8.22838 8.94304 9.56850 11.03869 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.005801 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.782843 B = 4825.792366 C = 5449.455060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 N -0.366 5.366 4 C 0.178 3.822 5 C -0.812 4.812 6 S 2.718 3.282 7 O -0.951 6.951 8 O -0.980 6.980 9 N -0.989 5.989 10 C 0.095 3.905 11 C 0.257 3.743 12 C -0.527 4.527 13 H 0.061 0.939 14 C 0.062 3.938 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.130 3.870 21 N -0.300 5.300 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.193 0.807 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 -6.019 -11.597 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.001 3.999 3 N -0.145 5.145 4 C 0.026 3.974 5 C -0.908 4.908 6 S 2.804 3.196 7 O -0.941 6.941 8 O -0.970 6.970 9 N -0.829 5.829 10 C -0.051 4.051 11 C 0.135 3.865 12 C -0.566 4.566 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.538 5.538 16 Si 0.724 3.276 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.060 4.060 21 N -0.119 5.119 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.120 0.880 27 H 0.209 0.791 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.006 -6.740 -12.452 15.380 hybrid contribution 0.474 0.317 1.213 1.340 sum -5.532 -6.423 -11.239 14.077 Atomic orbital electron populations 1.22054 0.93424 1.03000 1.03845 1.21847 0.96499 0.77253 1.04276 1.49255 1.34119 1.10500 1.20611 1.22575 0.89036 0.92619 0.93163 1.32164 1.29863 1.12636 1.16103 1.01160 0.73366 0.72940 0.72131 1.93575 1.56531 1.72023 1.71940 1.93471 1.82082 1.58372 1.63071 1.57318 1.66360 1.34862 1.24344 1.21362 0.95036 0.86913 1.01829 1.19049 0.97902 0.93964 0.75582 1.21482 1.19341 1.21482 0.94310 0.92061 1.24919 0.96002 0.95087 0.97978 1.69907 1.38501 1.30251 1.15118 0.86578 0.82047 0.79602 0.79356 1.20174 1.21258 1.19934 1.23488 0.91760 0.97555 0.93176 1.77276 1.23919 0.97087 1.13611 0.91713 0.91083 0.90531 0.89433 0.88041 0.79056 0.94335 0.90360 0.91333 0.94762 0.94509 0.92701 0.78859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.10 37.16 0.38 -0.99 16 2 C 0.12 1.09 7.23 -4.04 -0.03 1.06 16 3 N -0.37 -4.94 3.68 -61.37 -0.23 -5.16 16 4 C 0.18 2.66 11.19 -17.22 -0.19 2.47 16 5 C -0.81 -13.52 6.17 -40.01 -0.25 -13.77 16 6 S 2.72 53.88 5.79 -107.50 -0.62 53.25 16 7 O -0.95 -22.05 16.82 -57.17 -0.96 -23.02 16 8 O -0.98 -20.13 16.47 -57.17 -0.94 -21.07 16 9 N -0.99 -20.40 3.17 -123.05 -0.39 -20.78 16 10 C 0.10 1.63 10.68 59.85 0.64 2.27 16 11 C 0.26 6.33 5.08 -5.19 -0.03 6.30 16 12 C -0.53 -14.57 9.38 -34.44 -0.32 -14.90 16 13 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 15 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 16 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.13 1.97 11.82 -17.36 -0.21 1.77 16 21 N -0.30 -4.52 12.42 30.62 0.38 -4.14 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.10 0.68 8.07 -51.93 -0.42 0.26 16 27 H 0.19 2.47 8.06 -52.49 -0.42 2.05 16 28 H 0.04 0.56 8.14 -51.94 -0.42 0.13 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.07 1.09 7.02 -51.92 -0.36 0.73 16 31 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.04 0.94 7.61 -51.93 -0.40 0.54 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.19 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 311.42 15.07 4.69 4.69 Total: -1.00 -34.66 311.42 -6.98 -41.64 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.52 Total: -2.77 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -0.11 Total: -14.15 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.50 Total: -55.14 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.90 Total: -44.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 53.88 SS G_CDS: -0.62 Total: 53.25 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.66 -6.98 -41.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259831835.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.293 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds