Wall clock time and date at job start Mon Mar 30 2020 01:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 S 1.76203 * 126.03632 * 180.02562 * 5 4 3 7 7 O 1.42097 * 106.40155 * 23.51343 * 6 5 4 8 8 O 1.42098 * 106.40436 * 156.43419 * 6 5 4 9 9 N 1.65598 * 107.21894 * 269.97731 * 6 5 4 10 10 C 1.46507 * 119.99907 * 270.00153 * 9 6 5 11 11 C 1.46498 * 120.00339 * 89.99744 * 9 6 5 12 12 C 1.50707 * 109.47026 * 95.00220 * 11 9 6 13 13 H 1.08000 * 119.99876 * 359.97438 * 12 11 9 14 14 C 1.37872 * 119.99996 * 180.02562 * 12 11 9 15 15 N 1.31515 * 120.00159 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00057 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47223 * 59.99485 * 16 14 12 18 18 H 1.48502 * 109.47210 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47061 * 299.99390 * 16 14 12 20 20 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 21 21 N 1.30844 * 108.19764 * 359.97438 * 20 5 4 22 22 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 23 23 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 24 24 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 26 26 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 27 27 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 28 28 H 1.08988 * 109.47271 * 89.99650 * 10 9 6 29 29 H 1.09002 * 109.46758 * 209.99935 * 10 9 6 30 30 H 1.09011 * 109.46667 * 329.99574 * 10 9 6 31 31 H 1.08995 * 109.47413 * 214.99980 * 11 9 6 32 32 H 1.09002 * 109.47112 * 335.00381 * 11 9 6 33 33 H 0.96996 * 120.00011 * 180.02562 * 15 14 12 34 34 H 1.07995 * 125.89923 * 180.25722 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 16 4.1051 4.3664 1.3873 7 8 5.0660 3.5990 2.0993 8 8 4.4557 5.3607 0.4347 9 7 3.1708 5.1204 2.5279 10 6 2.4476 6.3482 2.1874 11 6 3.0673 4.5596 3.8774 12 6 4.0725 5.2298 4.7783 13 1 4.7236 5.9964 4.3848 14 6 4.1616 4.8636 6.1045 15 7 3.3691 3.9297 6.5835 16 14 5.4081 5.6937 7.2210 17 1 5.1351 7.1526 7.2692 18 1 5.3031 5.1254 8.5889 19 1 6.7766 5.4634 6.6926 20 6 2.3129 3.4723 -0.6000 21 7 1.6811 2.3745 -0.9282 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.3184 1.4127 1.7364 28 1 1.4579 6.0937 1.8086 29 1 2.3474 6.9694 3.0774 30 1 2.9999 6.8949 1.4229 31 1 2.0627 4.7286 4.2650 32 1 3.2679 3.4888 3.8423 33 1 3.4315 3.6723 7.5166 34 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259831835.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:17 Heat of formation + Delta-G solvation = -20.730757 kcal Electronic energy + Delta-G solvation = -19392.802145 eV Core-core repulsion = 16260.811415 eV Total energy + Delta-G solvation = -3131.990730 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.32414 -38.10769 -37.13763 -36.68967 -35.51331 -34.44286 -31.69398 -30.57433 -29.59169 -26.70738 -25.02209 -24.13099 -22.97504 -21.83903 -19.75360 -18.99019 -18.36756 -18.17656 -17.06899 -16.80606 -16.55861 -16.26320 -15.51830 -15.13150 -14.93083 -14.77214 -14.08996 -13.97853 -13.87651 -13.61807 -13.20882 -13.08008 -13.00742 -12.97558 -12.84518 -12.83214 -12.39476 -12.32063 -12.20028 -11.89950 -11.73852 -11.60013 -10.66395 -10.54375 -10.26697 -9.67961 -8.15439 -6.26489 -0.34900 0.52206 1.22097 1.41174 1.43952 1.46991 1.54089 2.36598 2.47772 3.03223 3.15875 3.22470 3.63453 3.77611 3.99808 4.03852 4.22536 4.30116 4.37863 4.49343 4.74503 4.80069 4.84231 4.91030 5.13804 5.16530 5.26050 5.33843 5.54292 5.75600 5.79939 5.98708 6.16500 6.34171 6.81521 7.42037 8.91840 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.005801 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.782843 B = 4825.792366 C = 5449.455060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.108 3.892 3 N -0.357 5.357 4 C 0.176 3.824 5 C -0.825 4.825 6 S 2.732 3.268 7 O -0.992 6.992 8 O -0.991 6.991 9 N -0.997 5.997 10 C 0.088 3.912 11 C 0.270 3.730 12 C -0.547 4.547 13 H 0.053 0.947 14 C 0.014 3.986 15 N -0.925 5.925 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.276 1.276 20 C 0.126 3.874 21 N -0.310 5.310 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.127 0.873 27 H 0.208 0.792 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.026 0.974 32 H 0.023 0.977 33 H 0.267 0.733 34 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 -6.600 -12.111 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.011 4.011 3 N -0.135 5.135 4 C 0.021 3.979 5 C -0.925 4.925 6 S 2.822 3.178 7 O -0.982 6.982 8 O -0.981 6.981 9 N -0.836 5.836 10 C -0.058 4.058 11 C 0.147 3.853 12 C -0.587 4.587 13 H 0.072 0.928 14 C -0.185 4.185 15 N -0.565 5.565 16 Si 0.779 3.221 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.202 1.202 20 C -0.063 4.063 21 N -0.129 5.129 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.145 0.855 27 H 0.224 0.776 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.496 -7.289 -12.971 16.234 hybrid contribution 0.554 0.403 1.277 1.449 sum -5.942 -6.886 -11.693 14.814 Atomic orbital electron populations 1.22028 0.92827 1.04521 1.02404 1.22369 0.97022 0.75157 1.06566 1.49635 1.32902 1.11626 1.19368 1.22861 0.89022 0.92365 0.93653 1.31594 1.31087 1.12743 1.17104 1.00315 0.73091 0.72705 0.71645 1.93518 1.58789 1.72814 1.73095 1.93445 1.82598 1.59185 1.62898 1.57215 1.66886 1.36291 1.23202 1.21584 0.96428 0.85759 1.01993 1.18646 0.96511 0.93085 0.77102 1.21830 1.19922 1.21610 0.95291 0.92846 1.25690 0.97736 0.95709 0.99384 1.69992 1.39698 1.31205 1.15588 0.85676 0.79445 0.79215 0.77798 1.19039 1.20269 1.20177 1.23858 0.91183 0.98549 0.92723 1.77248 1.24043 0.97382 1.14246 0.93139 0.92434 0.87555 0.87525 0.85452 0.77569 0.91429 0.90980 0.90147 0.95618 0.95879 0.92430 0.76838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.10 71.98 0.73 -1.55 16 2 C 0.11 1.63 7.23 86.38 0.62 2.26 16 3 N -0.36 -8.95 3.68 -348.07 -1.28 -10.23 16 4 C 0.18 5.03 11.19 83.54 0.93 5.97 16 5 C -0.82 -26.78 6.17 21.99 0.14 -26.65 16 6 S 2.73 108.34 5.79 -56.49 -0.33 108.02 16 7 O -0.99 -46.81 16.82 -128.00 -2.15 -48.96 16 8 O -0.99 -40.32 16.47 -128.00 -2.11 -42.42 16 9 N -1.00 -41.15 3.17 -543.20 -1.72 -42.87 16 10 C 0.09 2.93 10.68 127.77 1.36 4.29 16 11 C 0.27 13.49 5.08 85.64 0.43 13.92 16 12 C -0.55 -30.60 9.38 25.60 0.24 -30.36 16 13 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 14 C 0.01 0.79 5.46 84.65 0.46 1.25 16 15 N -0.92 -53.28 13.29 21.45 0.28 -52.99 16 16 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 C 0.13 3.65 11.82 85.23 1.01 4.66 16 21 N -0.31 -8.81 12.42 -57.02 -0.71 -9.52 16 22 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.13 1.30 8.07 -2.39 -0.02 1.28 16 27 H 0.21 5.13 8.06 -2.91 -0.02 5.11 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 30 H 0.08 2.48 7.02 -2.38 -0.02 2.46 16 31 H 0.03 1.31 8.11 -2.39 -0.02 1.29 16 32 H 0.02 1.21 7.61 -2.39 -0.02 1.19 16 33 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.22 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -73.64 311.42 1.04 -72.60 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.09 Total: 6.49 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 5.93 Total: -26.21 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -3.42 Total: -115.62 kcal Atomic # 8 Polarization: -87.13 SS G_CDS: -4.26 Total: -91.39 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 108.34 SS G_CDS: -0.33 Total: 108.02 kcal Total: -73.64 1.04 -72.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259831835.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.874 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds