Wall clock time and date at job start Mon Mar 30 2020 01:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36760 * 127.14590 * 2 1 4 4 C 1.50699 * 126.33793 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.47021 * 269.97154 * 4 3 2 6 6 N 1.30290 * 107.32121 * 179.97438 * 3 2 1 7 7 N 1.28524 * 110.08135 * 0.02562 * 6 3 2 8 8 C 1.31284 * 109.85398 * 359.97438 * 7 6 3 9 9 S 1.76209 * 126.48497 * 179.74060 * 8 7 6 10 10 C 1.80998 * 99.99789 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.47124 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46927 * 180.02562 * 11 10 9 13 13 C 1.42905 * 113.99727 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47100 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99664 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99749 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00211 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99603 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46859 * 90.00090 * 18 16 14 20 20 H 1.48506 * 109.46998 * 209.99851 * 18 16 14 21 21 H 1.48498 * 109.47550 * 330.00137 * 18 16 14 22 22 H 1.08989 * 109.46908 * 270.02225 * 1 2 3 23 23 H 1.08999 * 109.46678 * 30.02175 * 1 2 3 24 24 H 1.09000 * 109.46673 * 150.01731 * 1 2 3 25 25 H 1.09000 * 109.47602 * 29.96895 * 4 3 2 26 26 H 1.09000 * 109.47525 * 149.97460 * 4 3 2 27 27 H 0.96696 * 114.00198 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.47424 * 300.00146 * 10 9 8 29 29 H 1.09005 * 109.47255 * 59.99890 * 10 9 8 30 30 H 1.09001 * 109.46801 * 299.99640 * 11 10 9 31 31 H 1.09000 * 109.47003 * 60.00254 * 11 10 9 32 32 H 1.08999 * 109.46791 * 300.00322 * 13 12 11 33 33 H 1.09001 * 109.46815 * 59.99688 * 13 12 11 34 34 H 0.96991 * 120.00008 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2908 1.0901 0.0000 4 6 1.8624 2.5349 0.0005 5 8 1.7272 2.9922 -1.3466 6 7 3.5165 0.6482 0.0006 7 7 3.5223 -0.6370 0.0004 8 6 2.2895 -1.0884 0.0002 9 16 1.7927 -2.7790 -0.0065 10 6 3.4143 -3.5830 -0.0116 11 6 3.2305 -5.1019 -0.0173 12 8 4.5108 -5.7366 -0.0208 13 6 4.4516 -7.1644 -0.0268 14 6 5.8504 -7.7252 -0.0306 15 1 6.6996 -7.0579 -0.0283 16 6 6.0460 -9.0900 -0.0372 17 7 5.0118 -9.9025 -0.0405 18 14 7.7798 -9.7850 -0.0427 19 1 8.2411 -9.9756 1.3560 20 1 7.7872 -11.0914 -0.7487 21 1 8.6896 -8.8405 -0.7396 22 1 -0.3633 0.0004 1.0276 23 1 -0.3632 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5136 25 1 0.9058 2.6301 0.5142 26 1 2.6123 3.1361 0.5147 27 1 1.4535 3.9165 -1.4227 28 1 3.9672 -3.2802 -0.9009 29 1 3.9691 -3.2878 0.8790 30 1 2.6779 -5.4043 0.8723 31 1 2.6756 -5.3974 -0.9077 32 1 3.9237 -7.5099 0.8621 33 1 3.9226 -7.5024 -0.9178 34 1 5.1494 -10.8626 -0.0455 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261236043.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:18 Heat of formation + Delta-G solvation = -18.812610 kcal Electronic energy + Delta-G solvation = -17752.043549 eV Core-core repulsion = 14620.135997 eV Total energy + Delta-G solvation = -3131.907553 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.11529 -37.41278 -36.91784 -35.29123 -32.87713 -31.71916 -30.95794 -28.14001 -27.15134 -26.85209 -23.28493 -22.56941 -22.19305 -21.16331 -18.23056 -18.00219 -16.68811 -16.49132 -16.39297 -15.93405 -15.45647 -15.36256 -14.88882 -14.51706 -13.86283 -13.63020 -13.47404 -13.31797 -13.13726 -12.59152 -12.04873 -11.80579 -11.27931 -11.25353 -10.88161 -10.82937 -10.78129 -10.68544 -10.54534 -10.34755 -10.14693 -10.08523 -9.14775 -8.90023 -8.24252 -7.82934 -6.12594 -4.14522 0.82730 1.26895 1.94202 2.27644 2.51593 3.31322 3.36183 3.42288 3.62079 4.14354 4.28667 4.34981 4.37318 4.62700 4.71117 4.80595 4.92298 5.09005 5.16912 5.24153 5.43286 5.56208 5.66804 5.74843 6.03841 6.15167 6.34683 6.99150 7.03037 7.37194 7.77399 8.10336 8.39755 8.48376 8.97850 9.50317 10.98917 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.047824 B = 0.002779 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.336124 B =10074.740465 C =10546.942285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.459 5.459 3 C 0.170 3.830 4 C 0.171 3.829 5 O -0.565 6.565 6 N -0.261 5.261 7 N -0.286 5.286 8 C 0.168 3.832 9 S 0.008 5.992 10 C -0.099 4.099 11 C 0.079 3.921 12 O -0.388 6.388 13 C 0.196 3.804 14 C -0.516 4.516 15 H 0.068 0.932 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.910 3.090 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.271 1.271 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.390 0.610 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.801 24.099 1.019 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.154 5.154 3 C -0.100 4.100 4 C 0.090 3.910 5 O -0.370 6.370 6 N -0.104 5.104 7 N -0.130 5.130 8 C -0.206 4.206 9 S 0.236 5.764 10 C -0.247 4.247 11 C -0.001 4.001 12 O -0.308 6.308 13 C 0.121 3.879 14 C -0.554 4.554 15 H 0.086 0.914 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.737 3.263 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.195 1.195 22 H 0.105 0.895 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.238 0.762 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.094 22.934 0.878 26.933 hybrid contribution 0.126 0.482 0.134 0.516 sum -13.968 23.416 1.012 27.284 Atomic orbital electron populations 1.22187 0.74812 1.05740 1.04427 1.46271 1.08814 1.04890 1.55409 1.24541 0.87015 0.91210 1.07218 1.20082 1.00539 0.85514 0.84825 1.86561 1.92139 1.33060 1.25280 1.73950 1.17175 1.03275 1.15954 1.74818 1.15498 1.02684 1.20037 1.26869 0.90181 0.96205 1.07393 1.85259 1.12601 0.86038 1.92489 1.23539 0.94375 0.98196 1.08629 1.21788 0.89183 0.88687 1.00404 1.87888 1.24175 1.23492 1.95270 1.20282 0.98374 0.73536 0.95690 1.21053 0.91925 0.91439 1.51018 0.91372 1.24952 0.97979 0.96512 0.95040 1.69958 1.29865 1.03511 1.50440 0.86306 0.83528 0.78226 0.78273 1.20412 1.21054 1.19545 0.89528 0.88629 0.88503 0.91459 0.89465 0.76154 0.87655 0.87636 0.93363 0.93360 0.97398 0.97381 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 10.79 59.85 0.65 1.07 16 2 N -0.46 -5.19 3.21 -120.91 -0.39 -5.58 16 3 C 0.17 2.06 7.70 -154.00 -1.19 0.87 16 4 C 0.17 1.16 7.25 36.01 0.26 1.42 16 5 O -0.56 -4.08 13.64 -35.23 -0.48 -4.56 16 6 N -0.26 -4.24 12.17 32.99 0.40 -3.83 16 7 N -0.29 -4.93 11.60 30.68 0.36 -4.58 16 8 C 0.17 2.41 8.07 -88.34 -0.71 1.70 16 9 S 0.01 0.11 21.80 -107.50 -2.34 -2.23 16 10 C -0.10 -1.58 5.60 37.16 0.21 -1.37 16 11 C 0.08 1.46 5.94 37.16 0.22 1.68 16 12 O -0.39 -9.44 10.33 -35.23 -0.36 -9.80 16 13 C 0.20 5.37 5.69 36.01 0.20 5.57 16 14 C -0.52 -15.31 9.43 -34.44 -0.32 -15.63 16 15 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 18 Si 0.91 22.00 29.54 -169.99 -5.02 16.98 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H 0.09 0.36 8.14 -51.94 -0.42 -0.06 16 23 H 0.10 0.38 7.88 -51.93 -0.41 -0.03 16 24 H 0.10 0.55 7.85 -51.93 -0.41 0.14 16 25 H 0.07 0.23 7.92 -51.93 -0.41 -0.18 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.39 0.55 9.12 45.56 0.42 0.96 16 28 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 29 H 0.11 1.75 8.14 -51.91 -0.42 1.33 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -37.17 316.88 -6.85 -44.02 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: -3.74 Total: -5.90 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.78 Total: -3.15 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 1.11 Total: -40.14 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.84 Total: -14.36 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.34 Total: -2.23 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.17 -6.85 -44.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261236043.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.206 kcal (2) G-P(sol) polarization free energy of solvation -37.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds