Wall clock time and date at job start Mon Mar 30 2020 01:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47228 * 2 1 4 4 C 1.35487 * 126.98292 * 265.00076 * 3 2 1 5 5 N 1.30519 * 107.31002 * 180.02562 * 4 3 2 6 6 N 1.28600 * 109.66926 * 359.72767 * 5 4 3 7 7 C 1.30518 * 109.67324 * 0.45263 * 6 5 4 8 8 S 1.76195 * 126.34617 * 179.82312 * 7 6 5 9 9 O 1.42098 * 104.28035 * 153.61524 * 8 7 6 10 10 O 1.42105 * 104.27718 * 25.76141 * 8 7 6 11 11 C 1.81399 * 104.45056 * 269.68784 * 8 7 6 12 12 C 1.53006 * 109.47004 * 179.97438 * 11 8 7 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 8 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00296 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46692 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47025 * 119.99570 * 18 16 14 21 21 H 1.48492 * 109.46854 * 239.99727 * 18 16 14 22 22 H 1.08996 * 109.46896 * 299.99850 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99734 * 1 2 3 24 24 H 1.08991 * 109.46974 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47527 * 240.00761 * 2 1 3 26 26 H 1.08999 * 109.47238 * 119.99749 * 2 1 3 27 27 H 1.08002 * 126.35001 * 0.02562 * 4 3 2 28 28 H 1.09000 * 109.47234 * 60.00085 * 11 8 7 29 29 H 1.09001 * 109.47232 * 299.99596 * 11 8 7 30 30 H 1.08993 * 109.46955 * 300.00150 * 12 11 8 31 31 H 1.09000 * 109.47050 * 59.99979 * 12 11 8 32 32 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 33 33 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 34 34 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3790 2.1182 -1.0782 5 7 2.7531 3.2895 -0.6404 6 7 2.6423 3.3286 0.6402 7 6 2.2017 2.1809 1.0784 8 16 1.8947 1.7531 2.7598 9 8 0.8990 0.7419 2.6881 10 8 1.6315 2.9966 3.3953 11 6 3.4655 1.0594 3.3444 12 6 3.3259 0.6455 4.8108 13 6 4.6507 0.0597 5.3036 14 6 4.5131 -0.3486 6.7478 15 1 3.5745 -0.2050 7.2624 16 6 5.5853 -0.9053 7.4120 17 7 6.7281 -1.0806 6.7852 18 14 5.4145 -1.4121 9.2018 19 1 4.0382 -1.1122 9.6719 20 1 5.6761 -2.8681 9.3311 21 1 6.3936 -0.6582 10.0253 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.3603 1.7963 -2.1089 28 1 4.2508 1.8097 3.2523 29 1 3.7237 0.1874 2.7434 30 1 3.0680 1.5176 5.4115 31 1 2.5406 -0.1047 4.9034 32 1 4.9083 -0.8125 4.7029 33 1 5.4363 0.8096 5.2110 34 1 7.4825 -1.4726 7.2523 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318361526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:13 Heat of formation + Delta-G solvation = -3.122957 kcal Electronic energy + Delta-G solvation = -19024.503697 eV Core-core repulsion = 15893.276498 eV Total energy + Delta-G solvation = -3131.227198 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.46553 -37.40816 -36.11178 -35.90122 -34.82639 -32.28812 -31.18134 -31.00713 -27.96702 -24.88905 -24.00389 -23.09806 -22.53748 -20.62435 -19.21817 -18.13137 -16.93732 -16.64833 -16.31462 -16.15741 -15.57834 -15.37013 -14.71166 -14.52476 -14.39740 -13.54847 -12.82466 -12.73884 -12.44085 -12.24187 -12.13565 -11.98281 -11.95023 -11.78159 -11.52884 -11.36768 -10.98302 -10.95189 -10.85408 -10.64731 -10.49075 -10.09296 -10.05929 -9.49364 -9.20079 -8.46312 -6.10863 -4.14443 -0.15701 1.04166 2.03425 2.38012 2.65334 3.26740 3.34745 3.39004 3.69719 3.82880 4.15560 4.23254 4.38188 4.53055 4.70605 4.75152 4.93604 5.01278 5.13148 5.26042 5.27275 5.40897 5.63241 5.68256 5.92131 6.12838 6.28623 6.29013 6.73715 7.49346 7.57765 7.86501 8.14928 8.25301 8.91859 9.50911 11.00318 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.031224 B = 0.004138 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.518678 B = 6765.064007 C = 6862.184506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.087 3.913 3 N -0.422 5.422 4 C 0.179 3.821 5 N -0.297 5.297 6 N -0.192 5.192 7 C -0.358 4.358 8 S 2.504 3.496 9 O -0.926 6.926 10 O -0.904 6.904 11 C -0.572 4.572 12 C -0.107 4.107 13 C 0.030 3.970 14 C -0.527 4.527 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.228 0.772 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.022 0.978 33 H 0.024 0.976 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.951 -0.184 -16.291 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.034 4.034 3 N -0.112 5.112 4 C -0.109 4.109 5 N -0.140 5.140 6 N -0.037 5.037 7 C -0.701 4.701 8 S 2.677 3.323 9 O -0.923 6.923 10 O -0.900 6.900 11 C -0.706 4.706 12 C -0.147 4.147 13 C -0.008 4.008 14 C -0.565 4.565 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.209 1.209 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.244 0.756 28 H 0.158 0.842 29 H 0.150 0.850 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.124 1.274 -15.966 18.948 hybrid contribution 0.324 -1.663 0.045 1.695 sum -9.800 -0.390 -15.921 18.699 Atomic orbital electron populations 1.22239 0.92370 1.04468 1.04061 1.22358 0.97621 0.77254 1.06204 1.46461 1.45128 1.14100 1.05473 1.26979 0.98819 0.89298 0.95757 1.74283 1.19039 1.17454 1.03254 1.74268 1.09883 1.15995 1.03578 1.38607 1.17434 0.96472 1.17549 1.06324 0.78851 0.75688 0.71437 1.93556 1.54811 1.59402 1.84510 1.93615 1.83617 1.42227 1.70586 1.30242 1.17938 1.12689 1.09765 1.21637 1.04286 1.01655 0.87095 1.19094 0.89475 0.96109 0.96138 1.21257 0.98026 1.41014 0.96234 0.92167 1.25016 0.95224 0.95631 0.98442 1.69961 1.02167 1.44403 1.36796 0.86490 0.78331 0.78200 0.84753 1.19543 1.20955 1.20896 0.89373 0.92292 0.89557 0.87471 0.87254 0.75604 0.84159 0.85027 0.90894 0.91054 0.95988 0.95792 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 9.99 37.16 0.37 -0.94 16 2 C 0.09 0.63 6.07 -4.04 -0.02 0.61 16 3 N -0.42 -4.48 2.75 -118.99 -0.33 -4.81 16 4 C 0.18 1.80 12.74 -89.95 -1.15 0.65 16 5 N -0.30 -4.33 12.21 29.69 0.36 -3.97 16 6 N -0.19 -3.16 12.20 30.35 0.37 -2.79 16 7 C -0.36 -5.02 7.68 -89.95 -0.69 -5.71 16 8 S 2.50 35.86 5.19 -107.50 -0.56 35.30 16 9 O -0.93 -13.15 13.99 -57.54 -0.81 -13.96 16 10 O -0.90 -16.20 17.94 -57.54 -1.03 -17.24 16 11 C -0.57 -8.16 5.98 37.16 0.22 -7.93 16 12 C -0.11 -1.98 5.16 -26.73 -0.14 -2.12 16 13 C 0.03 0.73 4.97 -27.88 -0.14 0.59 16 14 C -0.53 -14.23 9.11 -34.44 -0.31 -14.54 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 18 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.09 0.91 6.24 -51.93 -0.32 0.59 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.11 0.79 7.23 -51.93 -0.38 0.42 16 27 H 0.23 1.00 8.06 -52.49 -0.42 0.57 16 28 H 0.14 1.90 8.14 -51.92 -0.42 1.47 16 29 H 0.13 1.53 8.14 -51.92 -0.42 1.11 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 306.44 15.07 4.62 4.62 Total: -1.00 -35.88 306.44 -8.08 -43.96 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -4.47 Total: -4.06 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -1.96 Total: -27.87 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 1.14 Total: -36.70 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.84 Total: -31.20 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 35.86 SS G_CDS: -0.56 Total: 35.30 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.88 -8.08 -43.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318361526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.835 kcal (2) G-P(sol) polarization free energy of solvation -35.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds