Wall clock time and date at job start Mon Mar 30 2020 01:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47228 * 2 1 4 4 C 1.35487 * 126.98292 * 265.00076 * 3 2 1 5 5 N 1.30519 * 107.31002 * 180.02562 * 4 3 2 6 6 N 1.28600 * 109.66926 * 359.72767 * 5 4 3 7 7 C 1.30518 * 109.67324 * 0.45263 * 6 5 4 8 8 S 1.76195 * 126.34617 * 179.82312 * 7 6 5 9 9 O 1.42098 * 104.28035 * 153.61524 * 8 7 6 10 10 O 1.42105 * 104.27718 * 25.76141 * 8 7 6 11 11 C 1.81399 * 104.45056 * 269.68784 * 8 7 6 12 12 C 1.53006 * 109.47004 * 179.97438 * 11 8 7 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 8 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00296 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46692 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47025 * 119.99570 * 18 16 14 21 21 H 1.48492 * 109.46854 * 239.99727 * 18 16 14 22 22 H 1.08996 * 109.46896 * 299.99850 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99734 * 1 2 3 24 24 H 1.08991 * 109.46974 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47527 * 240.00761 * 2 1 3 26 26 H 1.08999 * 109.47238 * 119.99749 * 2 1 3 27 27 H 1.08002 * 126.35001 * 0.02562 * 4 3 2 28 28 H 1.09000 * 109.47234 * 60.00085 * 11 8 7 29 29 H 1.09001 * 109.47232 * 299.99596 * 11 8 7 30 30 H 1.08993 * 109.46955 * 300.00150 * 12 11 8 31 31 H 1.09000 * 109.47050 * 59.99979 * 12 11 8 32 32 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 33 33 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 34 34 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3790 2.1182 -1.0782 5 7 2.7531 3.2895 -0.6404 6 7 2.6423 3.3286 0.6402 7 6 2.2017 2.1809 1.0784 8 16 1.8947 1.7531 2.7598 9 8 0.8990 0.7419 2.6881 10 8 1.6315 2.9966 3.3953 11 6 3.4655 1.0594 3.3444 12 6 3.3259 0.6455 4.8108 13 6 4.6507 0.0597 5.3036 14 6 4.5131 -0.3486 6.7478 15 1 3.5745 -0.2050 7.2624 16 6 5.5853 -0.9053 7.4120 17 7 6.7281 -1.0806 6.7852 18 14 5.4145 -1.4121 9.2018 19 1 4.0382 -1.1122 9.6719 20 1 5.6761 -2.8681 9.3311 21 1 6.3936 -0.6582 10.0253 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.3603 1.7963 -2.1089 28 1 4.2508 1.8097 3.2523 29 1 3.7237 0.1874 2.7434 30 1 3.0680 1.5176 5.4115 31 1 2.5406 -0.1047 4.9034 32 1 4.9083 -0.8125 4.7029 33 1 5.4363 0.8096 5.2110 34 1 7.4825 -1.4726 7.2523 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318361526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:13 Heat of formation + Delta-G solvation = -27.909043 kcal Electronic energy + Delta-G solvation = -19025.578502 eV Core-core repulsion = 15893.276498 eV Total energy + Delta-G solvation = -3132.302004 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.38972 -38.56248 -37.32401 -36.76150 -36.50569 -34.18825 -32.15438 -31.69327 -29.72438 -25.84036 -25.52487 -24.18443 -23.35981 -22.22186 -20.28772 -19.12865 -18.57782 -17.72656 -17.50452 -17.27591 -16.81150 -16.43829 -16.23445 -15.79301 -15.28981 -14.50738 -14.22770 -14.12141 -13.61133 -13.56814 -13.40943 -13.30801 -13.08829 -12.87523 -12.77651 -12.66089 -12.59889 -12.26703 -12.16696 -11.76178 -11.74116 -11.48069 -11.36439 -11.20984 -10.91112 -10.55483 -8.20502 -6.30864 -1.31954 0.11749 1.25314 1.42204 1.44008 1.44193 1.56231 1.58052 2.41952 2.56626 2.82473 3.14178 3.46532 3.62575 3.63465 3.76907 3.98624 3.98734 4.29578 4.31845 4.35701 4.55329 4.63497 4.82747 4.86150 4.96717 5.06368 5.32817 5.49020 5.58065 5.64741 5.82031 6.21216 6.85471 7.19571 7.38805 8.91194 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.031224 B = 0.004138 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.518678 B = 6765.064007 C = 6862.184506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.074 3.926 3 N -0.416 5.416 4 C 0.204 3.796 5 N -0.340 5.340 6 N -0.234 5.234 7 C -0.370 4.370 8 S 2.534 3.466 9 O -0.925 6.925 10 O -0.946 6.946 11 C -0.570 4.570 12 C -0.107 4.107 13 C 0.029 3.971 14 C -0.548 4.548 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.961 3.039 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.281 1.281 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.106 0.894 25 H 0.156 0.844 26 H 0.109 0.891 27 H 0.284 0.716 28 H 0.145 0.855 29 H 0.161 0.839 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.010 0.990 33 H 0.001 0.999 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.839 -1.636 -17.691 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.046 4.046 3 N -0.105 5.105 4 C -0.084 4.084 5 N -0.183 5.183 6 N -0.080 5.080 7 C -0.716 4.716 8 S 2.708 3.292 9 O -0.921 6.921 10 O -0.942 6.942 11 C -0.704 4.704 12 C -0.146 4.146 13 C -0.009 4.009 14 C -0.586 4.586 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.786 3.214 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.207 1.207 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.124 0.876 25 H 0.173 0.827 26 H 0.127 0.873 27 H 0.299 0.701 28 H 0.163 0.837 29 H 0.179 0.821 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.029 0.971 33 H 0.020 0.980 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.032 -0.194 -17.339 20.552 hybrid contribution 0.566 -1.256 0.342 1.420 sum -10.466 -1.450 -16.998 20.014 Atomic orbital electron populations 1.22266 0.92644 1.05464 1.02996 1.22829 0.97469 0.75629 1.08666 1.46731 1.44300 1.14955 1.04522 1.27988 0.95360 0.87614 0.97416 1.74183 1.21235 1.20236 1.02678 1.74195 1.11356 1.17516 1.04923 1.38125 1.18532 0.96912 1.17981 1.05193 0.78170 0.74617 0.71193 1.93555 1.54675 1.59138 1.84725 1.93563 1.84205 1.44201 1.72225 1.30139 1.18569 1.14185 1.07516 1.21434 1.01663 1.01760 0.89769 1.18991 0.91688 0.95203 0.95064 1.21765 0.98223 1.40690 0.97936 0.91765 1.25898 0.94939 0.95739 1.02888 1.70073 1.02964 1.45441 1.38627 0.85455 0.78617 0.77934 0.79428 1.18562 1.20276 1.20669 0.92672 0.91113 0.87560 0.82671 0.87316 0.70075 0.83669 0.82111 0.91117 0.89745 0.97138 0.98038 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 9.99 71.98 0.72 -1.43 16 2 C 0.07 0.80 6.07 86.38 0.52 1.33 16 3 N -0.42 -7.71 2.75 -530.36 -1.46 -9.17 16 4 C 0.20 3.42 12.74 180.11 2.29 5.72 16 5 N -0.34 -9.51 12.21 -59.99 -0.73 -10.24 16 6 N -0.23 -7.68 12.20 -57.90 -0.71 -8.39 16 7 C -0.37 -10.03 7.68 180.11 1.38 -8.65 16 8 S 2.53 71.61 5.19 -56.49 -0.29 71.31 16 9 O -0.92 -25.34 13.99 -127.65 -1.79 -27.13 16 10 O -0.95 -34.61 17.94 -127.65 -2.29 -36.90 16 11 C -0.57 -15.91 5.98 71.98 0.43 -15.48 16 12 C -0.11 -3.95 5.16 30.60 0.16 -3.79 16 13 C 0.03 1.42 4.97 29.85 0.15 1.57 16 14 C -0.55 -29.79 9.11 25.60 0.23 -29.56 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.00 0.20 5.46 84.65 0.46 0.66 16 17 N -0.93 -54.50 13.29 21.45 0.28 -54.21 16 18 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H 0.05 1.06 6.24 -2.39 -0.01 1.05 16 23 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.11 1.23 7.23 -2.39 -0.02 1.21 16 27 H 0.28 0.93 8.06 -2.91 -0.02 0.91 16 28 H 0.15 3.93 8.14 -2.39 -0.02 3.91 16 29 H 0.16 3.47 8.14 -2.39 -0.02 3.45 16 30 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -80.06 306.44 2.49 -77.57 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.10 Total: 1.82 kcal Atomic # 6 Polarization: -55.99 SS G_CDS: 6.35 Total: -49.64 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -2.61 Total: -82.01 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -4.08 Total: -64.03 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 71.61 SS G_CDS: -0.29 Total: 71.31 kcal Total: -80.06 2.49 -77.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318361526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.658 kcal (2) G-P(sol) polarization free energy of solvation -80.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds