Wall clock time and date at job start Mon Mar 30 2020 01:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35048 * 126.39770 * 2 1 4 4 N 1.30503 * 108.69678 * 180.26644 * 3 2 1 5 5 C 1.34124 * 109.25857 * 359.76808 * 4 3 2 6 6 C 1.34668 * 108.02177 * 359.97438 * 5 4 3 7 7 C 1.50695 * 126.59363 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47096 * 95.02691 * 7 6 5 9 9 S 1.65608 * 120.00079 * 164.99965 * 8 7 6 10 10 O 1.42095 * 104.27841 * 181.07390 * 9 8 7 11 11 O 1.42102 * 104.27658 * 308.93104 * 9 8 7 12 12 C 1.81406 * 104.44741 * 65.00031 * 9 8 7 13 13 C 1.52991 * 109.46937 * 179.97438 * 12 9 8 14 14 C 1.50698 * 109.47171 * 180.02562 * 13 12 9 15 15 H 1.08003 * 120.00001 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00289 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00291 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00036 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47096 * 89.99587 * 18 16 14 20 20 H 1.48494 * 109.47269 * 210.00123 * 18 16 14 21 21 H 1.48506 * 109.46544 * 329.99721 * 18 16 14 22 22 H 1.09002 * 109.46998 * 270.12465 * 1 2 3 23 23 H 1.08999 * 109.47111 * 30.12461 * 1 2 3 24 24 H 1.09000 * 109.47225 * 150.12432 * 1 2 3 25 25 H 1.08003 * 125.64999 * 359.97438 * 3 2 1 26 26 H 1.07997 * 125.99239 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.47187 * 335.03173 * 7 6 5 28 28 H 1.09001 * 109.47274 * 215.02717 * 7 6 5 29 29 H 0.97002 * 120.00027 * 345.00475 * 8 7 6 30 30 H 1.09000 * 109.47167 * 300.00580 * 12 9 8 31 31 H 1.09000 * 109.46895 * 59.99901 * 12 9 8 32 32 H 1.09008 * 109.47545 * 300.00011 * 13 12 9 33 33 H 1.09000 * 109.47377 * 60.00235 * 13 12 9 34 34 H 0.96998 * 120.00587 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6902 -0.0057 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1018 0.0029 7 6 1.8363 -2.5428 0.0064 8 7 1.5854 -2.9734 1.3840 9 16 0.7437 -4.3697 1.6748 10 8 0.6752 -4.4489 3.0919 11 8 -0.4340 -4.2388 0.8906 12 6 1.8054 -5.6840 1.0144 13 6 1.1296 -7.0401 1.2262 14 6 2.0118 -8.1321 0.6781 15 1 2.9596 -7.8835 0.2237 16 6 1.6087 -9.4483 0.7557 17 7 2.3783 -10.4012 0.2770 18 14 -0.0315 -9.8781 1.5397 19 1 -1.0929 -9.8734 0.5012 20 1 0.0525 -11.2266 2.1557 21 1 -0.3579 -8.8756 2.5856 22 1 -0.3633 0.0022 1.0277 23 1 -0.3633 0.8889 -0.5158 24 1 -0.3634 -0.8911 -0.5119 25 1 1.9334 2.1145 -0.0004 26 1 4.4368 -1.2612 -0.0078 27 1 2.6184 -3.1631 -0.4314 28 1 0.9220 -2.6444 -0.5783 29 1 1.9121 -2.4406 2.1258 30 1 1.9662 -5.5201 -0.0512 31 1 2.7642 -5.6713 1.5326 32 1 0.9692 -7.2038 2.2919 33 1 0.1706 -7.0531 0.7082 34 1 2.0949 -11.3272 0.3319 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329383869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:12 Heat of formation + Delta-G solvation = -14.421162 kcal Electronic energy + Delta-G solvation = -18797.083634 eV Core-core repulsion = 15665.366509 eV Total energy + Delta-G solvation = -3131.717125 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.33110 -36.83819 -35.75756 -35.50319 -34.17411 -33.99195 -31.52227 -30.17725 -27.25661 -26.01801 -25.60347 -21.68461 -21.36943 -20.40895 -19.15659 -17.84574 -17.43946 -16.81080 -16.32786 -15.73503 -15.62963 -14.97652 -14.69447 -14.32979 -14.06885 -13.70196 -13.48818 -13.19388 -13.14351 -12.84769 -12.75001 -11.94096 -11.83640 -11.81581 -11.73558 -11.29343 -11.25062 -10.49520 -10.26149 -10.16454 -9.90331 -9.84470 -9.55605 -9.26725 -8.69079 -8.68250 -6.19136 -4.20765 0.54496 1.70656 2.50829 2.84955 3.10251 3.24019 3.31761 3.35294 4.02304 4.26775 4.33125 4.43421 4.48561 4.50004 4.80770 4.87722 4.99458 5.12364 5.15975 5.27028 5.42340 5.47367 5.51836 5.71298 6.09206 6.23052 6.47757 6.77115 6.85779 6.90525 6.92871 7.51524 7.81683 8.33485 8.81962 9.40286 10.93190 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.004194 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.528922 B = 6673.871531 C = 7073.855216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.453 5.453 3 C 0.184 3.816 4 N -0.496 5.496 5 C -0.005 4.005 6 C -0.037 4.037 7 C 0.192 3.808 8 N -1.125 6.125 9 S 2.589 3.411 10 O -0.964 6.964 11 O -0.968 6.968 12 C -0.581 4.581 13 C -0.007 4.007 14 C -0.521 4.521 15 H 0.078 0.922 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.869 3.131 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.262 1.262 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.205 0.795 26 H 0.174 0.826 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.416 0.584 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.033 0.967 33 H 0.028 0.972 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 20.912 -1.146 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.136 5.136 3 C -0.098 4.098 4 N -0.214 5.214 5 C -0.155 4.155 6 C -0.153 4.153 7 C 0.065 3.935 8 N -0.882 5.882 9 S 2.687 3.313 10 O -0.955 6.955 11 O -0.958 6.958 12 C -0.715 4.715 13 C -0.047 4.047 14 C -0.560 4.560 15 H 0.097 0.903 16 C -0.131 4.131 17 N -0.533 5.533 18 Si 0.696 3.304 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.186 1.186 22 H 0.098 0.902 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.222 0.778 26 H 0.191 0.809 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.249 0.751 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.377 21.104 -0.913 21.392 hybrid contribution -0.796 -0.752 0.344 1.148 sum -4.173 20.352 -0.569 20.783 Atomic orbital electron populations 1.22144 0.76256 1.05071 1.04156 1.45348 1.07842 1.06642 1.53732 1.24993 0.85666 0.93469 1.05709 1.70326 1.19372 1.11961 1.19719 1.22222 0.95761 0.91119 1.06418 1.21136 0.91397 0.89379 1.13375 1.19565 1.02056 0.88534 0.83327 1.55895 1.76838 1.42733 1.12776 1.05639 0.75870 0.75104 0.74697 1.93570 1.86677 1.85971 1.29265 1.93538 1.44818 1.85243 1.72206 1.30283 1.14766 1.14032 1.12378 1.19414 0.96719 0.90208 0.98325 1.20845 1.05801 0.89430 1.39879 0.90349 1.24986 0.97123 0.96301 0.94675 1.69876 1.37394 1.00400 1.45588 0.86925 0.84484 0.78467 0.80566 1.19683 1.20739 1.18647 0.90206 0.89249 0.88970 0.77813 0.80912 0.88872 0.89573 0.75078 0.85625 0.85258 0.94915 0.95369 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.01 59.85 0.66 1.07 16 2 N -0.45 -4.08 3.15 -121.37 -0.38 -4.46 16 3 C 0.18 1.69 12.56 -90.37 -1.14 0.55 16 4 N -0.50 -5.96 11.25 -14.66 -0.16 -6.12 16 5 C -0.01 -0.06 11.79 -17.81 -0.21 -0.27 16 6 C -0.04 -0.38 6.35 -81.60 -0.52 -0.90 16 7 C 0.19 1.92 6.37 -5.20 -0.03 1.88 16 8 N -1.12 -12.78 5.88 -11.66 -0.07 -12.85 16 9 S 2.59 40.38 5.46 -107.50 -0.59 39.80 16 10 O -0.96 -18.11 18.08 -57.54 -1.04 -19.15 16 11 O -0.97 -17.27 17.50 -57.54 -1.01 -18.27 16 12 C -0.58 -9.92 6.01 37.15 0.22 -9.70 16 13 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 14 C -0.52 -14.22 9.66 -34.44 -0.33 -14.55 16 15 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 18 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.09 0.62 7.30 -51.93 -0.38 0.24 16 25 H 0.21 1.08 8.06 -52.48 -0.42 0.65 16 26 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.84 6.92 -51.93 -0.36 0.48 16 29 H 0.42 4.32 8.61 -34.48 -0.30 4.03 16 30 H 0.13 1.88 8.14 -51.92 -0.42 1.46 16 31 H 0.13 2.02 8.14 -51.92 -0.42 1.59 16 32 H 0.03 0.75 7.20 -51.92 -0.37 0.38 16 33 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 307.48 15.07 4.63 4.63 Total: -1.00 -36.39 307.48 -8.42 -44.81 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.35 Total: 1.33 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -1.56 Total: -20.25 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.16 Total: -49.36 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -2.05 Total: -37.42 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 40.38 SS G_CDS: -0.59 Total: 39.80 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.39 -8.42 -44.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329383869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.388 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds