Wall clock time and date at job start Mon Mar 30 2020 01:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35048 * 126.39770 * 2 1 4 4 N 1.30503 * 108.69678 * 180.26644 * 3 2 1 5 5 C 1.34124 * 109.25857 * 359.76808 * 4 3 2 6 6 C 1.34668 * 108.02177 * 359.97438 * 5 4 3 7 7 C 1.50695 * 126.59363 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47096 * 95.02691 * 7 6 5 9 9 S 1.65608 * 120.00079 * 164.99965 * 8 7 6 10 10 O 1.42095 * 104.27841 * 181.07390 * 9 8 7 11 11 O 1.42102 * 104.27658 * 308.93104 * 9 8 7 12 12 C 1.81406 * 104.44741 * 65.00031 * 9 8 7 13 13 C 1.52991 * 109.46937 * 179.97438 * 12 9 8 14 14 C 1.50698 * 109.47171 * 180.02562 * 13 12 9 15 15 H 1.08003 * 120.00001 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00289 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00291 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00036 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47096 * 89.99587 * 18 16 14 20 20 H 1.48494 * 109.47269 * 210.00123 * 18 16 14 21 21 H 1.48506 * 109.46544 * 329.99721 * 18 16 14 22 22 H 1.09002 * 109.46998 * 270.12465 * 1 2 3 23 23 H 1.08999 * 109.47111 * 30.12461 * 1 2 3 24 24 H 1.09000 * 109.47225 * 150.12432 * 1 2 3 25 25 H 1.08003 * 125.64999 * 359.97438 * 3 2 1 26 26 H 1.07997 * 125.99239 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.47187 * 335.03173 * 7 6 5 28 28 H 1.09001 * 109.47274 * 215.02717 * 7 6 5 29 29 H 0.97002 * 120.00027 * 345.00475 * 8 7 6 30 30 H 1.09000 * 109.47167 * 300.00580 * 12 9 8 31 31 H 1.09000 * 109.46895 * 59.99901 * 12 9 8 32 32 H 1.09008 * 109.47545 * 300.00011 * 13 12 9 33 33 H 1.09000 * 109.47377 * 60.00235 * 13 12 9 34 34 H 0.96998 * 120.00587 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6902 -0.0057 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1018 0.0029 7 6 1.8363 -2.5428 0.0064 8 7 1.5854 -2.9734 1.3840 9 16 0.7437 -4.3697 1.6748 10 8 0.6752 -4.4489 3.0919 11 8 -0.4340 -4.2388 0.8906 12 6 1.8054 -5.6840 1.0144 13 6 1.1296 -7.0401 1.2262 14 6 2.0118 -8.1321 0.6781 15 1 2.9596 -7.8835 0.2237 16 6 1.6087 -9.4483 0.7557 17 7 2.3783 -10.4012 0.2770 18 14 -0.0315 -9.8781 1.5397 19 1 -1.0929 -9.8734 0.5012 20 1 0.0525 -11.2266 2.1557 21 1 -0.3579 -8.8756 2.5856 22 1 -0.3633 0.0022 1.0277 23 1 -0.3633 0.8889 -0.5158 24 1 -0.3634 -0.8911 -0.5119 25 1 1.9334 2.1145 -0.0004 26 1 4.4368 -1.2612 -0.0078 27 1 2.6184 -3.1631 -0.4314 28 1 0.9220 -2.6444 -0.5783 29 1 1.9121 -2.4406 2.1258 30 1 1.9662 -5.5201 -0.0512 31 1 2.7642 -5.6713 1.5326 32 1 0.9692 -7.2038 2.2919 33 1 0.1706 -7.0531 0.7082 34 1 2.0949 -11.3272 0.3319 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329383869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:11 Heat of formation + Delta-G solvation = -42.084845 kcal Electronic energy + Delta-G solvation = -18798.283222 eV Core-core repulsion = 15665.366509 eV Total energy + Delta-G solvation = -3132.916713 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.03969 -38.19839 -37.06844 -36.48353 -35.87008 -34.83513 -33.45022 -30.98928 -27.86303 -27.81342 -26.41716 -23.17537 -22.38696 -21.15746 -20.37395 -19.38614 -18.63700 -18.00704 -17.26740 -17.02619 -16.58001 -16.34947 -15.95982 -15.55725 -15.22097 -14.80711 -14.71285 -14.27570 -13.92008 -13.77696 -13.75690 -13.40629 -13.23439 -13.12911 -13.05052 -12.93632 -12.90592 -12.21290 -11.93438 -11.69867 -11.34060 -10.95332 -10.82592 -10.54303 -10.47338 -9.43460 -8.34647 -6.40306 -0.73497 0.94999 1.33419 1.35677 1.45301 1.84957 1.91804 2.22411 2.31127 2.75574 2.99617 3.24106 3.54212 3.89475 3.93138 3.99019 4.07838 4.15584 4.28615 4.40363 4.56485 4.61128 4.69931 4.79627 4.82155 5.10633 5.15894 5.38543 5.49788 5.74370 5.99430 6.18832 6.27447 6.66540 7.09580 7.24209 8.80881 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.004194 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.528922 B = 6673.871531 C = 7073.855216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.454 5.454 3 C 0.190 3.810 4 N -0.536 5.536 5 C -0.021 4.021 6 C -0.045 4.045 7 C 0.186 3.814 8 N -1.107 6.107 9 S 2.627 3.373 10 O -0.994 6.994 11 O -0.986 6.986 12 C -0.589 4.589 13 C -0.019 4.019 14 C -0.527 4.527 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.941 5.941 18 Si 0.925 3.075 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.249 1.249 22 H 0.083 0.917 23 H 0.119 0.881 24 H 0.087 0.913 25 H 0.240 0.760 26 H 0.180 0.820 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.423 0.577 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.352 22.745 -0.961 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.136 5.136 3 C -0.093 4.093 4 N -0.255 5.255 5 C -0.171 4.171 6 C -0.161 4.161 7 C 0.060 3.940 8 N -0.868 5.868 9 S 2.723 3.277 10 O -0.985 6.985 11 O -0.976 6.976 12 C -0.721 4.721 13 C -0.058 4.058 14 C -0.566 4.566 15 H 0.069 0.931 16 C -0.186 4.186 17 N -0.581 5.581 18 Si 0.748 3.252 19 H -0.184 1.184 20 H -0.202 1.202 21 H -0.172 1.172 22 H 0.101 0.899 23 H 0.137 0.863 24 H 0.106 0.894 25 H 0.256 0.744 26 H 0.197 0.803 27 H 0.130 0.870 28 H 0.109 0.891 29 H 0.259 0.741 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.778 22.933 -0.727 23.437 hybrid contribution -0.287 -1.191 0.229 1.246 sum -5.065 21.742 -0.498 22.330 Atomic orbital electron populations 1.22380 0.74623 1.06399 1.04788 1.45550 1.08856 1.06208 1.52997 1.25688 0.85032 0.94825 1.03708 1.70311 1.21178 1.12491 1.21517 1.22475 0.96573 0.91279 1.06764 1.21104 0.91429 0.89699 1.13897 1.19800 1.03069 0.88951 0.82208 1.55465 1.76412 1.40959 1.13997 1.04331 0.75131 0.74985 0.73289 1.93527 1.87092 1.86649 1.31193 1.93513 1.45929 1.85644 1.72532 1.30296 1.15450 1.11993 1.14341 1.19382 0.96629 0.91942 0.97826 1.21204 1.05414 0.90934 1.39017 0.93146 1.25883 1.00846 0.96432 0.95447 1.70010 1.39574 1.00920 1.47594 0.86022 0.80275 0.78624 0.80285 1.18432 1.20199 1.17235 0.89881 0.86263 0.89442 0.74405 0.80266 0.86987 0.89070 0.74106 0.83654 0.84053 0.95092 0.94796 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 11.01 127.77 1.41 1.98 16 2 N -0.45 -7.09 3.15 -537.89 -1.70 -8.78 16 3 C 0.19 3.05 12.56 180.26 2.26 5.31 16 4 N -0.54 -12.16 11.25 -200.31 -2.25 -14.41 16 5 C -0.02 -0.44 11.79 83.52 0.98 0.54 16 6 C -0.04 -0.84 6.35 40.95 0.26 -0.58 16 7 C 0.19 3.29 6.37 85.63 0.55 3.83 16 8 N -1.11 -22.71 5.88 -190.79 -1.12 -23.83 16 9 S 2.63 76.81 5.46 -56.49 -0.31 76.50 16 10 O -0.99 -35.68 18.08 -127.65 -2.31 -37.99 16 11 O -0.99 -33.06 17.50 -127.65 -2.23 -35.29 16 12 C -0.59 -19.24 6.01 71.98 0.43 -18.81 16 13 C -0.02 -0.84 4.05 29.84 0.12 -0.72 16 14 C -0.53 -29.00 9.66 25.60 0.25 -28.75 16 15 H 0.05 2.96 7.99 -2.91 -0.02 2.94 16 16 C 0.01 0.70 5.47 84.66 0.46 1.17 16 17 N -0.94 -57.26 13.96 21.45 0.30 -56.96 16 18 Si 0.93 43.01 27.47 68.60 1.88 44.90 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 22 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.09 0.96 7.30 -2.39 -0.02 0.94 16 25 H 0.24 1.73 8.06 -2.91 -0.02 1.70 16 26 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 27 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.56 6.92 -2.39 -0.02 1.54 16 29 H 0.42 7.88 8.61 -96.74 -0.83 7.05 16 30 H 0.15 4.09 8.14 -2.39 -0.02 4.07 16 31 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16 32 H 0.03 1.39 7.20 -2.38 -0.02 1.37 16 33 H 0.03 1.47 7.57 -2.39 -0.02 1.45 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -78.33 307.48 -0.79 -79.12 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.23 Total: 12.77 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 6.73 Total: -36.02 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -4.77 Total: -103.99 kcal Atomic # 8 Polarization: -68.74 SS G_CDS: -4.54 Total: -73.28 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.90 kcal Atomic # 16 Polarization: 76.81 SS G_CDS: -0.31 Total: 76.50 kcal Total: -78.33 -0.79 -79.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329383869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.036 kcal (2) G-P(sol) polarization free energy of solvation -78.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds