Wall clock time and date at job start Mon Mar 30 2020 01:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47016 * 2 1 4 4 N 1.28716 * 125.86666 * 270.02747 * 3 2 1 5 5 N 1.28635 * 110.17785 * 179.97438 * 4 3 2 6 6 C 1.33770 * 108.88693 * 359.76479 * 5 4 3 7 7 C 1.50700 * 126.75208 * 180.23660 * 6 5 4 8 8 C 1.35311 * 125.87114 * 89.99548 * 3 2 1 9 9 C 1.50702 * 126.91001 * 359.97438 * 8 3 2 10 10 S 1.81398 * 109.47325 * 89.99881 * 9 8 3 11 11 O 1.42105 * 108.57879 * 65.51020 * 10 9 8 12 12 O 1.42097 * 108.57629 * 294.48781 * 10 9 8 13 13 C 1.81391 * 101.92304 * 179.97438 * 10 9 8 14 14 C 1.50695 * 109.47313 * 180.02562 * 13 10 9 15 15 H 1.08001 * 120.00083 * 359.97438 * 14 13 10 16 16 C 1.37879 * 120.00122 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00112 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99881 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47163 * 60.00084 * 18 16 14 20 20 H 1.48499 * 109.47051 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47293 * 299.99642 * 18 16 14 22 22 H 1.09000 * 109.47284 * 60.00727 * 1 2 3 23 23 H 1.09006 * 109.46890 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47708 * 299.99867 * 1 2 3 25 25 H 1.08999 * 109.47708 * 240.00133 * 2 1 3 26 26 H 1.09000 * 109.47284 * 119.99273 * 2 1 3 27 27 H 1.08998 * 109.47009 * 270.15682 * 7 6 5 28 28 H 1.09001 * 109.47445 * 30.16121 * 7 6 5 29 29 H 1.09002 * 109.47168 * 150.15992 * 7 6 5 30 30 H 1.08998 * 109.47154 * 329.99769 * 9 8 3 31 31 H 1.09006 * 109.47117 * 210.00059 * 9 8 3 32 32 H 1.09003 * 109.47583 * 300.00163 * 13 10 9 33 33 H 1.09003 * 109.47643 * 59.99714 * 13 10 9 34 34 H 0.97002 * 119.99619 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2692 2.0924 -1.0431 5 7 2.6816 3.2601 -0.6952 6 6 2.7018 3.3321 0.6404 7 6 3.1137 4.5186 1.4733 8 6 2.2825 2.1288 1.0965 9 6 2.1332 1.7084 2.5359 10 16 3.6855 0.9691 3.1141 11 8 4.6911 1.9731 3.1185 12 8 3.9099 -0.2345 2.3929 13 6 3.2829 0.5477 4.8319 14 6 4.4808 -0.0906 5.4866 15 1 5.3929 -0.2293 4.9252 16 6 4.4119 -0.4985 6.8018 17 7 3.3010 -0.3300 7.4853 18 14 5.8966 -1.2903 7.6131 19 1 7.0380 -0.3404 7.5913 20 1 5.5671 -1.6351 9.0194 21 1 6.2653 -2.5242 6.8738 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 4.1835 4.4668 1.6754 28 1 2.8902 5.4378 0.9319 29 1 2.5652 4.5092 2.4152 30 1 1.3292 0.9771 2.6194 31 1 1.8963 2.5799 3.1463 32 1 3.0124 1.4536 5.3745 33 1 2.4450 -0.1493 4.8483 34 1 3.2527 -0.6166 8.4107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339320034.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:04 Heat of formation + Delta-G solvation = 12.014237 kcal Electronic energy + Delta-G solvation = -19493.353597 eV Core-core repulsion = 16362.782797 eV Total energy + Delta-G solvation = -3130.570800 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.29497 -36.26496 -35.64495 -35.26440 -33.75346 -33.45896 -31.22987 -29.34421 -28.89067 -26.69750 -24.55773 -23.60741 -21.23485 -20.79059 -18.28301 -17.40023 -16.80562 -16.62390 -15.67452 -15.52149 -15.28651 -14.80022 -14.53088 -14.09609 -13.61585 -13.51082 -13.03388 -12.59027 -12.56566 -12.34053 -12.28511 -12.16630 -11.74453 -11.61378 -11.50036 -11.31865 -11.26938 -10.98471 -10.95410 -10.72315 -10.65767 -9.96658 -9.87122 -9.36903 -8.79691 -8.71547 -6.43176 -4.53612 0.56996 1.64667 2.30700 2.57091 3.18905 3.21413 3.26400 3.55082 3.95768 4.17768 4.25458 4.45470 4.57430 4.64585 4.73781 4.89948 4.99576 5.02666 5.15673 5.29335 5.38612 5.42811 5.66678 5.75744 5.79731 5.93852 6.02960 6.38189 6.47060 6.52929 6.57275 7.36488 7.63333 8.48024 8.53035 9.14509 10.68406 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.005440 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.474601 B = 5145.916659 C = 5580.226416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.096 3.904 3 N -0.277 5.277 4 N -0.080 5.080 5 N -0.271 5.271 6 C -0.001 4.001 7 C -0.074 4.074 8 C -0.013 4.013 9 C -0.560 4.560 10 S 2.387 3.613 11 O -0.940 6.940 12 O -0.953 6.953 13 C -0.396 4.396 14 C -0.533 4.533 15 H 0.072 0.928 16 C 0.077 3.923 17 N -0.881 5.881 18 Si 0.906 3.094 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.154 0.846 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.240 2.517 -8.290 11.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.024 4.024 3 N -0.073 5.073 4 N -0.059 5.059 5 N -0.137 5.137 6 C -0.141 4.141 7 C -0.133 4.133 8 C -0.145 4.145 9 C -0.684 4.684 10 S 2.571 3.429 11 O -0.937 6.937 12 O -0.950 6.950 13 C -0.531 4.531 14 C -0.572 4.572 15 H 0.090 0.910 16 C -0.129 4.129 17 N -0.517 5.517 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.194 1.194 22 H 0.087 0.913 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.130 0.870 26 H 0.135 0.865 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.156 0.844 31 H 0.172 0.828 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.590 2.413 -10.243 12.416 hybrid contribution -0.347 -0.529 1.982 2.080 sum -6.938 1.884 -8.261 10.951 Atomic orbital electron populations 1.22185 0.92957 1.04120 1.03532 1.22341 0.96201 0.76570 1.07325 1.47291 1.42448 1.13480 1.04043 1.78215 1.16927 0.99068 1.11667 1.75031 1.16464 1.10529 1.11652 1.21879 1.04621 0.96033 0.91547 1.20211 1.03196 0.92643 0.97244 1.20729 1.10608 0.93638 0.89507 1.29326 1.27101 1.14852 0.97101 1.09464 0.76751 0.75554 0.81168 1.93492 1.52503 1.60200 1.87533 1.93459 1.83388 1.45050 1.73128 1.27495 1.07144 1.07085 1.11415 1.20298 0.96371 1.42653 0.97838 0.90967 1.24920 0.96832 0.94652 0.96535 1.69926 1.26242 1.45189 1.10322 0.86402 0.82031 0.80149 0.78261 1.19311 1.20650 1.19390 0.91325 0.89323 0.91545 0.86992 0.86476 0.89172 0.90441 0.90552 0.84364 0.82787 0.89348 0.89607 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.10 1.12 6.75 -4.04 -0.03 1.09 16 3 N -0.28 -4.28 3.34 -57.05 -0.19 -4.48 16 4 N -0.08 -1.38 13.17 60.35 0.79 -0.59 16 5 N -0.27 -4.86 12.41 33.29 0.41 -4.45 16 6 C 0.00 -0.02 7.25 -82.78 -0.60 -0.62 16 7 C -0.07 -0.99 10.27 36.01 0.37 -0.62 16 8 C -0.01 -0.20 6.26 -82.09 -0.51 -0.71 16 9 C -0.56 -7.78 5.70 36.01 0.21 -7.58 16 10 S 2.39 45.79 4.62 -107.50 -0.50 45.29 16 11 O -0.94 -20.63 18.10 -57.83 -1.05 -21.68 16 12 O -0.95 -20.38 17.31 -57.83 -1.00 -21.38 16 13 C -0.40 -8.61 5.56 36.00 0.20 -8.41 16 14 C -0.53 -13.96 9.13 -34.44 -0.31 -14.28 16 15 H 0.07 1.89 7.71 -52.49 -0.40 1.49 16 16 C 0.08 2.02 5.46 -17.82 -0.10 1.93 16 17 N -0.88 -23.59 13.29 55.43 0.74 -22.85 16 18 Si 0.91 20.22 29.54 -169.99 -5.02 15.20 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.12 1.38 6.92 -51.93 -0.36 1.03 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.85 7.31 -51.93 -0.38 0.47 16 30 H 0.14 1.49 7.81 -51.93 -0.41 1.08 16 31 H 0.15 1.69 7.31 -51.92 -0.38 1.32 16 32 H 0.09 1.85 8.14 -51.92 -0.42 1.42 16 33 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -34.19 310.17 -5.98 -40.17 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.44 Total: 0.40 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: -0.40 Total: -30.31 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 1.75 Total: -32.37 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -2.05 Total: -43.06 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 45.79 SS G_CDS: -0.50 Total: 45.29 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.19 -5.98 -40.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339320034.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.185 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds