Wall clock time and date at job start Mon Mar 30 2020 01:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47016 * 2 1 4 4 N 1.28716 * 125.86666 * 270.02747 * 3 2 1 5 5 N 1.28635 * 110.17785 * 179.97438 * 4 3 2 6 6 C 1.33770 * 108.88693 * 359.76479 * 5 4 3 7 7 C 1.50700 * 126.75208 * 180.23660 * 6 5 4 8 8 C 1.35311 * 125.87114 * 89.99548 * 3 2 1 9 9 C 1.50702 * 126.91001 * 359.97438 * 8 3 2 10 10 S 1.81398 * 109.47325 * 89.99881 * 9 8 3 11 11 O 1.42105 * 108.57879 * 65.51020 * 10 9 8 12 12 O 1.42097 * 108.57629 * 294.48781 * 10 9 8 13 13 C 1.81391 * 101.92304 * 179.97438 * 10 9 8 14 14 C 1.50695 * 109.47313 * 180.02562 * 13 10 9 15 15 H 1.08001 * 120.00083 * 359.97438 * 14 13 10 16 16 C 1.37879 * 120.00122 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00112 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99881 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47163 * 60.00084 * 18 16 14 20 20 H 1.48499 * 109.47051 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47293 * 299.99642 * 18 16 14 22 22 H 1.09000 * 109.47284 * 60.00727 * 1 2 3 23 23 H 1.09006 * 109.46890 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47708 * 299.99867 * 1 2 3 25 25 H 1.08999 * 109.47708 * 240.00133 * 2 1 3 26 26 H 1.09000 * 109.47284 * 119.99273 * 2 1 3 27 27 H 1.08998 * 109.47009 * 270.15682 * 7 6 5 28 28 H 1.09001 * 109.47445 * 30.16121 * 7 6 5 29 29 H 1.09002 * 109.47168 * 150.15992 * 7 6 5 30 30 H 1.08998 * 109.47154 * 329.99769 * 9 8 3 31 31 H 1.09006 * 109.47117 * 210.00059 * 9 8 3 32 32 H 1.09003 * 109.47583 * 300.00163 * 13 10 9 33 33 H 1.09003 * 109.47643 * 59.99714 * 13 10 9 34 34 H 0.97002 * 119.99619 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2692 2.0924 -1.0431 5 7 2.6816 3.2601 -0.6952 6 6 2.7018 3.3321 0.6404 7 6 3.1137 4.5186 1.4733 8 6 2.2825 2.1288 1.0965 9 6 2.1332 1.7084 2.5359 10 16 3.6855 0.9691 3.1141 11 8 4.6911 1.9731 3.1185 12 8 3.9099 -0.2345 2.3929 13 6 3.2829 0.5477 4.8319 14 6 4.4808 -0.0906 5.4866 15 1 5.3929 -0.2293 4.9252 16 6 4.4119 -0.4985 6.8018 17 7 3.3010 -0.3300 7.4853 18 14 5.8966 -1.2903 7.6131 19 1 7.0380 -0.3404 7.5913 20 1 5.5671 -1.6351 9.0194 21 1 6.2653 -2.5242 6.8738 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 4.1835 4.4668 1.6754 28 1 2.8902 5.4378 0.9319 29 1 2.5652 4.5092 2.4152 30 1 1.3292 0.9771 2.6194 31 1 1.8963 2.5799 3.1463 32 1 3.0124 1.4536 5.3745 33 1 2.4450 -0.1493 4.8483 34 1 3.2527 -0.6166 8.4107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339320034.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:04 Heat of formation + Delta-G solvation = -13.849414 kcal Electronic energy + Delta-G solvation = -19494.475130 eV Core-core repulsion = 16362.782797 eV Total energy + Delta-G solvation = -3131.692332 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.50690 -37.86475 -36.89710 -36.69896 -35.37772 -34.95120 -32.19327 -31.07606 -30.10243 -27.89049 -25.62830 -25.34366 -22.40369 -21.95543 -19.79750 -19.00572 -18.26883 -17.90214 -17.19287 -16.99852 -16.80255 -16.17173 -15.75398 -15.44489 -14.64975 -14.47890 -14.43059 -14.05882 -13.97374 -13.52991 -13.39542 -13.33352 -12.98880 -12.96802 -12.91568 -12.87851 -12.71077 -12.55029 -12.47099 -12.29776 -11.86919 -11.78339 -11.16944 -10.93602 -10.74567 -9.99353 -8.39384 -6.54574 -0.94438 0.43420 1.24201 1.31909 1.40661 1.41873 1.50262 2.07040 2.31941 2.69570 2.94040 3.08846 3.20169 3.40781 3.59877 3.72922 3.85845 4.05026 4.24070 4.30544 4.42316 4.66387 4.70604 4.79273 4.80279 4.81412 4.85943 5.00307 5.10545 5.32630 5.38561 5.45558 5.77043 6.54195 7.16019 7.28526 8.72307 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.005440 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.474601 B = 5145.916659 C = 5580.226416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 N -0.271 5.271 4 N -0.096 5.096 5 N -0.300 5.300 6 C -0.009 4.009 7 C -0.080 4.080 8 C -0.030 4.030 9 C -0.529 4.529 10 S 2.402 3.598 11 O -0.975 6.975 12 O -0.983 6.983 13 C -0.414 4.414 14 C -0.563 4.563 15 H 0.058 0.942 16 C 0.031 3.969 17 N -0.905 5.905 18 Si 0.954 3.046 19 H -0.267 1.267 20 H -0.269 1.269 21 H -0.266 1.266 22 H 0.064 0.936 23 H 0.116 0.884 24 H 0.069 0.931 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.178 0.822 31 H 0.192 0.808 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 2.528 -8.205 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.040 4.040 3 N -0.067 5.067 4 N -0.074 5.074 5 N -0.165 5.165 6 C -0.150 4.150 7 C -0.139 4.139 8 C -0.163 4.163 9 C -0.659 4.659 10 S 2.590 3.410 11 O -0.972 6.972 12 O -0.980 6.980 13 C -0.548 4.548 14 C -0.602 4.602 15 H 0.076 0.924 16 C -0.173 4.173 17 N -0.541 5.541 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.193 1.193 21 H -0.191 1.191 22 H 0.083 0.917 23 H 0.134 0.866 24 H 0.088 0.912 25 H 0.142 0.858 26 H 0.134 0.866 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.196 0.804 31 H 0.210 0.790 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.910 2.379 -10.124 13.066 hybrid contribution 0.008 -0.512 1.842 1.912 sum -7.903 1.868 -8.282 11.599 Atomic orbital electron populations 1.22196 0.90415 1.05935 1.03539 1.22787 0.98334 0.74898 1.07940 1.47678 1.41177 1.14304 1.03554 1.78150 1.17473 0.99322 1.12468 1.75007 1.17611 1.11164 1.12714 1.22465 1.03853 0.97269 0.91388 1.20400 1.02837 0.92389 0.98239 1.20982 1.11318 0.93786 0.90213 1.29003 1.23525 1.17014 0.96318 1.08570 0.78088 0.74803 0.79497 1.93449 1.55645 1.60650 1.87501 1.93419 1.84929 1.46875 1.72746 1.27554 1.05725 1.07221 1.14290 1.20688 0.97601 1.43291 0.98618 0.92408 1.25663 0.99238 0.95166 0.97183 1.69972 1.27493 1.45993 1.10690 0.85662 0.79287 0.79389 0.78001 1.19142 1.19291 1.19085 0.91668 0.86592 0.91153 0.85831 0.86554 0.90190 0.88753 0.88049 0.80423 0.79048 0.88760 0.88807 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.24 71.98 0.74 -1.62 16 2 C 0.08 1.67 6.75 86.38 0.58 2.26 16 3 N -0.27 -7.86 3.34 -334.40 -1.12 -8.98 16 4 N -0.10 -3.20 13.17 37.02 0.49 -2.71 16 5 N -0.30 -10.50 12.41 -48.60 -0.60 -11.11 16 6 C -0.01 -0.28 7.25 41.60 0.30 0.02 16 7 C -0.08 -1.98 10.27 71.24 0.73 -1.25 16 8 C -0.03 -0.88 6.26 41.36 0.26 -0.63 16 9 C -0.53 -12.96 5.70 71.24 0.41 -12.56 16 10 S 2.40 89.78 4.62 -56.49 -0.26 89.52 16 11 O -0.98 -42.63 18.10 -127.37 -2.30 -44.93 16 12 O -0.98 -41.64 17.31 -127.37 -2.20 -43.84 16 13 C -0.41 -17.79 5.56 71.23 0.40 -17.39 16 14 C -0.56 -29.80 9.13 25.60 0.23 -29.57 16 15 H 0.06 3.11 7.71 -2.91 -0.02 3.09 16 16 C 0.03 1.63 5.46 84.65 0.46 2.09 16 17 N -0.90 -48.18 13.29 21.45 0.28 -47.89 16 18 Si 0.95 41.18 29.54 68.60 2.03 43.20 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 20 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.12 2.49 6.92 -2.39 -0.02 2.48 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.10 1.93 7.31 -2.39 -0.02 1.91 16 30 H 0.18 3.02 7.81 -2.39 -0.02 3.00 16 31 H 0.19 3.33 7.31 -2.39 -0.02 3.32 16 32 H 0.09 3.87 8.14 -2.39 -0.02 3.85 16 33 H 0.09 3.80 8.14 -2.39 -0.02 3.79 16 34 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -74.69 310.17 1.52 -73.16 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.10 Total: 12.22 kcal Atomic # 6 Polarization: -62.75 SS G_CDS: 4.11 Total: -58.64 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -0.95 Total: -70.69 kcal Atomic # 8 Polarization: -84.26 SS G_CDS: -4.51 Total: -88.77 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: 89.78 SS G_CDS: -0.26 Total: 89.52 kcal Total: -74.69 1.52 -73.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339320034.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.316 kcal (2) G-P(sol) polarization free energy of solvation -74.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds