Wall clock time and date at job start Mon Mar 30 2020 01:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.47218 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47627 * 179.97438 * 17 16 15 19 19 C 1.42894 * 114.00302 * 179.97438 * 18 17 16 20 20 C 1.52996 * 109.47416 * 179.97438 * 19 18 17 21 21 O 1.42908 * 109.47007 * 64.99648 * 20 19 18 22 22 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 23 23 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 24 24 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 25 25 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 26 26 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 27 27 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 28 28 H 1.09007 * 109.46999 * 300.00013 * 17 16 15 29 29 H 1.09006 * 109.47297 * 59.99693 * 17 16 15 30 30 H 1.08999 * 109.47054 * 300.00089 * 19 18 17 31 31 H 1.09001 * 109.47185 * 59.99605 * 19 18 17 32 32 H 1.08996 * 109.47755 * 184.99653 * 20 19 18 33 33 H 1.08996 * 109.47001 * 305.00287 * 20 19 18 34 34 H 0.96699 * 113.99849 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2164 -5.1063 -0.0015 18 8 4.4942 -5.7460 0.0039 19 6 4.4296 -7.1735 0.0034 20 6 5.8476 -7.7482 0.0088 21 8 6.4981 -7.3996 1.2325 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.5753 4.9451 0.0298 26 1 3.9654 -3.2905 -0.8867 27 1 3.9562 -3.2921 0.8932 28 1 2.6570 -5.4037 0.8856 29 1 2.6659 -5.4028 -0.8945 30 1 3.8960 -7.5134 0.8910 31 1 3.9037 -7.5131 -0.8889 32 1 5.8002 -8.8334 -0.0811 33 1 6.4090 -7.3382 -0.8307 34 1 7.4032 -7.7321 1.3053 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344416793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:21 Heat of formation + Delta-G solvation = -42.932474 kcal Electronic energy + Delta-G solvation = -18162.674815 eV Core-core repulsion = 15029.721346 eV Total energy + Delta-G solvation = -3132.953468 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94083 -38.44634 -36.63499 -33.94897 -33.60233 -31.83826 -30.03482 -29.15171 -26.76839 -25.41408 -22.99639 -22.73333 -21.41458 -20.14383 -18.20944 -17.94247 -17.14549 -16.65648 -16.10755 -15.26404 -15.08360 -14.95763 -14.65369 -13.93025 -13.68600 -13.58550 -13.27069 -12.95559 -12.62168 -12.56093 -11.98016 -11.78086 -11.59042 -11.33292 -11.10622 -10.84760 -10.39064 -10.33599 -9.88681 -9.77826 -9.56018 -9.39634 -9.10302 -8.69011 -8.39705 -7.43603 -7.13051 -4.85587 1.67687 2.53770 2.89644 3.57611 3.60726 3.65657 3.87705 3.96795 4.04874 4.15221 4.42200 4.72649 4.87562 4.92270 4.96114 5.10174 5.17486 5.24174 5.29703 5.36837 5.46253 5.71513 5.78004 5.89391 6.07378 6.36773 6.63478 7.00598 7.10487 7.36925 7.38906 7.51757 8.03700 8.33836 8.54358 9.95477 10.10403 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.003879 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.361370 B = 7216.203429 C = 8104.965776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.512 5.512 3 C 0.345 3.655 4 C -0.491 4.491 5 H 0.083 0.917 6 C 0.065 3.935 7 N -0.807 5.807 8 Si 1.111 2.889 9 H -0.311 1.311 10 H -0.260 1.260 11 H -0.280 1.280 12 N -0.415 5.415 13 N -0.265 5.265 14 C 0.066 3.934 15 S -0.035 6.035 16 C -0.097 4.097 17 C 0.081 3.919 18 O -0.374 6.374 19 C 0.061 3.939 20 C 0.078 3.922 21 O -0.565 6.565 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.283 0.717 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 -20.609 -0.973 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.214 5.214 3 C 0.102 3.898 4 C -0.532 4.532 5 H 0.101 0.899 6 C -0.158 4.158 7 N -0.431 5.431 8 Si 0.940 3.060 9 H -0.241 1.241 10 H -0.185 1.185 11 H -0.207 1.207 12 N -0.265 5.265 13 N -0.109 5.109 14 C -0.308 4.308 15 S 0.191 5.809 16 C -0.246 4.246 17 C 0.003 3.997 18 O -0.293 6.293 19 C -0.016 4.016 20 C 0.000 4.000 21 O -0.370 6.370 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 0.588 -20.031 -0.979 20.064 hybrid contribution -1.918 -0.348 0.007 1.950 sum -1.331 -20.379 -0.972 20.446 Atomic orbital electron populations 1.21543 0.77732 1.02972 1.02026 1.45824 1.06417 1.04823 1.64315 1.21728 0.85128 0.89057 0.93846 1.19401 0.97447 0.87202 1.49157 0.89855 1.27358 1.08488 0.91252 0.88690 1.70676 1.21559 1.18462 1.32372 0.82714 0.70580 0.72170 0.80535 1.24085 1.18529 1.20674 1.74010 1.15913 1.00921 1.35668 1.74296 1.15386 1.05561 1.15626 1.25276 0.90888 0.92932 1.21699 1.84265 1.09714 0.91342 1.95576 1.23159 0.97970 0.95137 1.08353 1.22085 0.85622 0.91102 1.00935 1.87979 1.28015 1.17900 1.95418 1.22539 0.96329 0.81878 1.00827 1.22190 0.92937 0.97468 0.87427 1.86591 1.31680 1.80230 1.38537 0.92126 0.91155 0.90240 0.90546 0.88192 0.88118 0.92444 0.92523 0.92509 0.91823 0.92225 0.92620 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 10.89 59.85 0.65 2.46 16 2 N -0.51 -12.05 3.26 -123.18 -0.40 -12.45 16 3 C 0.35 9.37 7.27 -154.81 -1.13 8.24 16 4 C -0.49 -13.33 9.50 -38.31 -0.36 -13.70 16 5 H 0.08 2.18 7.46 -52.49 -0.39 1.79 16 6 C 0.06 1.77 5.52 -17.29 -0.10 1.68 16 7 N -0.81 -21.85 13.65 55.56 0.76 -21.09 16 8 Si 1.11 28.49 25.90 -169.99 -4.40 24.08 16 9 H -0.31 -7.62 7.11 56.52 0.40 -7.22 16 10 H -0.26 -6.89 6.76 56.52 0.38 -6.51 16 11 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 12 N -0.41 -11.80 7.52 31.26 0.23 -11.56 16 13 N -0.27 -7.00 11.62 30.89 0.36 -6.65 16 14 C 0.07 1.52 8.09 -87.28 -0.71 0.82 16 15 S -0.03 -0.60 21.79 -107.50 -2.34 -2.94 16 16 C -0.10 -1.54 5.59 37.16 0.21 -1.34 16 17 C 0.08 1.01 5.94 37.16 0.22 1.23 16 18 O -0.37 -5.05 10.31 -40.09 -0.41 -5.47 16 19 C 0.06 0.59 6.32 37.16 0.23 0.82 16 20 C 0.08 0.64 7.43 37.16 0.28 0.92 16 21 O -0.57 -5.76 13.63 -40.09 -0.55 -6.30 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 24 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 25 H 0.28 7.27 8.72 -40.82 -0.36 6.91 16 26 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 27 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.38 1.96 9.12 45.56 0.42 2.37 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -34.34 309.09 -6.54 -40.88 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -3.75 Total: -4.31 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.70 Total: 1.14 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.95 Total: -51.75 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.96 Total: -11.77 kcal Atomic # 14 Polarization: 28.49 SS G_CDS: -4.40 Total: 24.08 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -2.34 Total: -2.94 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.34 -6.54 -40.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344416793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.051 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds