Wall clock time and date at job start Mon Mar 30 2020 01:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.47218 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47627 * 179.97438 * 17 16 15 19 19 C 1.42894 * 114.00302 * 179.97438 * 18 17 16 20 20 C 1.52996 * 109.47416 * 179.97438 * 19 18 17 21 21 O 1.42908 * 109.47007 * 64.99648 * 20 19 18 22 22 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 23 23 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 24 24 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 25 25 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 26 26 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 27 27 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 28 28 H 1.09007 * 109.46999 * 300.00013 * 17 16 15 29 29 H 1.09006 * 109.47297 * 59.99693 * 17 16 15 30 30 H 1.08999 * 109.47054 * 300.00089 * 19 18 17 31 31 H 1.09001 * 109.47185 * 59.99605 * 19 18 17 32 32 H 1.08996 * 109.47755 * 184.99653 * 20 19 18 33 33 H 1.08996 * 109.47001 * 305.00287 * 20 19 18 34 34 H 0.96699 * 113.99849 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2164 -5.1063 -0.0015 18 8 4.4942 -5.7460 0.0039 19 6 4.4296 -7.1735 0.0034 20 6 5.8476 -7.7482 0.0088 21 8 6.4981 -7.3996 1.2325 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.5753 4.9451 0.0298 26 1 3.9654 -3.2905 -0.8867 27 1 3.9562 -3.2921 0.8932 28 1 2.6570 -5.4037 0.8856 29 1 2.6659 -5.4028 -0.8945 30 1 3.8960 -7.5134 0.8910 31 1 3.9037 -7.5131 -0.8889 32 1 5.8002 -8.8334 -0.0811 33 1 6.4090 -7.3382 -0.8307 34 1 7.4032 -7.7321 1.3053 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344416793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:20 Heat of formation + Delta-G solvation = -68.670160 kcal Electronic energy + Delta-G solvation = -18163.790885 eV Core-core repulsion = 15029.721346 eV Total energy + Delta-G solvation = -3134.069538 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.87421 -39.29472 -37.37205 -35.95999 -35.43326 -32.89746 -31.99871 -29.98134 -28.44753 -27.29488 -24.19326 -23.40679 -23.31286 -22.03736 -20.21563 -18.62710 -18.34756 -18.00571 -17.14509 -16.96546 -16.80460 -15.92180 -15.83377 -15.61989 -15.32034 -14.87128 -14.62076 -14.39729 -14.19933 -13.85842 -13.53157 -13.13374 -12.92269 -12.72836 -12.56482 -12.09489 -11.94801 -11.73898 -11.54025 -11.42462 -10.97188 -10.93459 -10.64448 -10.58536 -10.39195 -9.50717 -8.73760 -6.88601 0.16716 0.95512 1.02546 1.52827 1.57831 1.92206 2.10484 2.18886 2.40809 2.82015 3.02663 3.42797 3.79178 3.82971 3.93146 4.20008 4.28129 4.30357 4.34257 4.46307 4.55706 4.56335 4.62625 4.64819 4.67202 4.80776 4.87240 5.20449 5.35756 5.66441 5.99083 6.17165 6.37155 6.54981 6.92679 7.91072 8.12738 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.003879 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.361370 B = 7216.203429 C = 8104.965776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.514 5.514 3 C 0.325 3.675 4 C -0.507 4.507 5 H 0.086 0.914 6 C 0.044 3.956 7 N -0.821 5.821 8 Si 1.143 2.857 9 H -0.295 1.295 10 H -0.280 1.280 11 H -0.295 1.295 12 N -0.449 5.449 13 N -0.312 5.312 14 C 0.077 3.923 15 S 0.036 5.964 16 C -0.101 4.101 17 C 0.088 3.912 18 O -0.404 6.404 19 C 0.050 3.950 20 C 0.073 3.927 21 O -0.597 6.597 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.083 0.917 25 H 0.287 0.713 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 -23.233 -1.276 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.214 5.214 3 C 0.078 3.922 4 C -0.548 4.548 5 H 0.104 0.896 6 C -0.177 4.177 7 N -0.446 5.446 8 Si 0.973 3.027 9 H -0.224 1.224 10 H -0.207 1.207 11 H -0.223 1.223 12 N -0.298 5.298 13 N -0.154 5.154 14 C -0.299 4.299 15 S 0.262 5.738 16 C -0.251 4.251 17 C 0.010 3.990 18 O -0.325 6.325 19 C -0.026 4.026 20 C -0.004 4.004 21 O -0.405 6.405 22 H 0.099 0.901 23 H 0.119 0.881 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.758 -22.653 -1.283 22.701 hybrid contribution -1.563 0.167 0.107 1.576 sum -2.321 -22.486 -1.176 22.636 Atomic orbital electron populations 1.21947 0.74423 1.04771 1.03917 1.46196 1.08473 1.03953 1.62783 1.21823 0.85667 0.89990 0.94674 1.19414 0.97551 0.87458 1.50398 0.89554 1.27702 1.09568 0.91533 0.88872 1.70662 1.21953 1.18385 1.33641 0.82228 0.69853 0.71815 0.78832 1.22435 1.20664 1.22271 1.73875 1.17244 1.02185 1.36513 1.74228 1.17337 1.04952 1.18886 1.26506 0.90313 0.96055 1.16988 1.84011 1.09267 0.86000 1.94571 1.23247 0.97253 0.97916 1.06648 1.22029 0.85895 0.88330 1.02746 1.87942 1.28519 1.20294 1.95698 1.22891 0.97689 0.79773 1.02258 1.22376 0.92093 0.99356 0.86616 1.86531 1.33360 1.81019 1.39613 0.90117 0.88060 0.89814 0.90144 0.89672 0.90168 0.91031 0.90143 0.92236 0.89124 0.88852 0.92806 0.75409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.00 10.89 127.77 1.39 4.39 16 2 N -0.51 -23.49 3.26 -543.63 -1.77 -25.26 16 3 C 0.33 17.72 7.27 133.23 0.97 18.69 16 4 C -0.51 -27.74 9.50 23.09 0.22 -27.52 16 5 H 0.09 4.53 7.46 -2.91 -0.02 4.51 16 6 C 0.04 2.41 5.52 85.29 0.47 2.88 16 7 N -0.82 -44.62 13.65 21.86 0.30 -44.33 16 8 Si 1.14 59.39 25.90 68.60 1.78 61.17 16 9 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 10 H -0.28 -15.30 6.76 99.48 0.67 -14.63 16 11 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 12 N -0.45 -25.99 7.52 -55.02 -0.41 -26.40 16 13 N -0.31 -16.59 11.62 -56.17 -0.65 -17.25 16 14 C 0.08 3.45 8.09 179.18 1.45 4.90 16 15 S 0.04 1.13 21.79 -56.49 -1.23 -0.11 16 16 C -0.10 -3.08 5.59 71.98 0.40 -2.67 16 17 C 0.09 1.97 5.94 71.98 0.43 2.40 16 18 O -0.40 -10.21 10.31 -144.34 -1.49 -11.70 16 19 C 0.05 0.83 6.32 71.98 0.45 1.29 16 20 C 0.07 1.04 7.43 71.98 0.53 1.58 16 21 O -0.60 -11.38 13.63 -144.34 -1.97 -13.34 16 22 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.10 2.69 7.85 -2.39 -0.02 2.67 16 24 H 0.08 2.70 7.48 -2.39 -0.02 2.69 16 25 H 0.29 14.79 8.72 -92.71 -0.81 13.98 16 26 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 27 H 0.08 2.79 8.14 -2.40 -0.02 2.77 16 28 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.40 3.64 9.12 -74.06 -0.68 2.97 16 Total: -1.00 -75.04 309.09 1.24 -73.80 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: 0.37 Total: -2.52 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 6.32 Total: 5.94 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -2.54 Total: -113.24 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -3.45 Total: -25.05 kcal Atomic # 14 Polarization: 59.39 SS G_CDS: 1.78 Total: 61.17 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -1.23 Total: -0.11 kcal Total: -75.04 1.24 -73.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344416793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.131 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds