Wall clock time and date at job start Mon Mar 30 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00320 * 2 1 4 4 C 1.52995 * 109.47189 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47085 * 180.02562 * 4 3 2 6 6 C 1.36763 * 127.14279 * 265.00648 * 5 4 3 7 7 N 1.30292 * 107.31820 * 179.97438 * 6 5 4 8 8 N 1.28523 * 110.07980 * 359.76166 * 7 6 5 9 9 C 1.31286 * 109.85762 * 0.39073 * 8 7 6 10 10 S 1.76192 * 126.48700 * 179.88555 * 9 8 7 11 11 C 1.81003 * 100.00074 * 359.68614 * 10 9 8 12 12 C 1.53000 * 109.47207 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47398 * 59.99934 * 12 11 10 14 14 O 1.42903 * 109.46726 * 299.99689 * 12 11 10 15 15 C 1.50699 * 109.47083 * 179.97438 * 12 11 10 16 16 H 1.08000 * 119.99792 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47319 * 60.00570 * 19 17 15 21 21 H 1.48503 * 109.46734 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47266 * 300.00384 * 19 17 15 23 23 H 1.08994 * 109.47359 * 300.00070 * 1 2 3 24 24 H 1.09002 * 109.46844 * 59.99989 * 1 2 3 25 25 H 1.09000 * 109.47385 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46999 * 59.99343 * 3 2 1 27 27 H 1.08998 * 109.47113 * 299.99949 * 3 2 1 28 28 H 1.08997 * 109.47263 * 60.00319 * 4 3 2 29 29 H 1.08998 * 109.47210 * 300.00083 * 4 3 2 30 30 H 1.07999 * 126.33993 * 359.97438 * 6 5 4 31 31 H 1.08992 * 109.46989 * 60.00027 * 11 10 9 32 32 H 1.09004 * 109.46834 * 299.99724 * 11 10 9 33 33 H 0.96700 * 114.00234 * 300.00043 * 14 12 11 34 34 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0013 6 6 4.5545 3.2390 -1.0844 7 7 5.0172 4.3744 -0.6437 8 7 4.9119 4.4270 0.6361 9 6 4.3791 3.3146 1.0858 10 16 4.0407 2.9208 2.7695 11 6 4.6358 4.4306 3.5711 12 6 4.4391 4.3162 5.0841 13 1 4.9997 3.4602 5.4597 14 8 3.0505 4.1397 5.3718 15 6 4.9351 5.5730 5.7516 16 1 5.3496 6.3731 5.1562 17 6 4.8597 5.7014 7.1223 18 7 4.3555 4.7268 7.8473 19 14 5.4740 7.2595 7.9495 20 1 4.7105 8.4258 7.4376 21 1 5.2831 7.1484 9.4181 22 1 6.9170 7.4428 7.6508 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8575 0.6435 -0.8891 29 1 3.8567 0.6438 0.8908 30 1 4.5127 2.9219 -2.1160 31 1 4.0755 5.2865 3.1952 32 1 5.6951 4.5650 3.3520 33 1 2.4899 4.8655 5.0653 34 1 4.3028 4.8170 8.8116 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346402552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:33 Heat of formation + Delta-G solvation = -40.805459 kcal Electronic energy + Delta-G solvation = -18441.150055 eV Core-core repulsion = 15308.288821 eV Total energy + Delta-G solvation = -3132.861234 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.92609 -39.08669 -37.93721 -36.26594 -34.29896 -32.04486 -31.39083 -30.95550 -27.43585 -27.31381 -25.00329 -23.63179 -23.45744 -22.47337 -19.31259 -19.02409 -17.82154 -17.34582 -17.08005 -16.70462 -16.68840 -16.34897 -16.09858 -15.97174 -15.71736 -15.33960 -14.52158 -14.18562 -13.53026 -13.41759 -13.28609 -12.91974 -12.76180 -12.69470 -12.67923 -12.32023 -12.11933 -11.90766 -11.42301 -11.40715 -11.12041 -11.10152 -10.77080 -10.72433 -10.35164 -8.70066 -8.17453 -6.44047 0.07551 0.56325 1.13650 1.43002 1.44313 1.46388 1.53035 1.73894 2.39818 2.82678 3.09223 3.49554 3.71486 3.81047 4.06442 4.11306 4.16044 4.19620 4.22115 4.25767 4.44852 4.52238 4.59533 4.68959 4.85248 4.90082 4.93188 5.49484 5.64640 5.73051 5.96296 6.01378 6.64426 7.27554 7.44109 7.53705 8.86892 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.004311 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.262560 B = 6493.640743 C = 7434.434610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.051 3.949 4 C 0.108 3.892 5 N -0.462 5.462 6 C 0.181 3.819 7 N -0.337 5.337 8 N -0.335 5.335 9 C 0.150 3.850 10 S 0.015 5.985 11 C -0.102 4.102 12 C 0.248 3.752 13 H 0.038 0.962 14 O -0.570 6.570 15 C -0.586 4.586 16 H 0.061 0.939 17 C 0.033 3.967 18 N -0.895 5.895 19 Si 0.962 3.038 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.269 1.269 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.105 0.895 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.148 0.852 29 H 0.100 0.900 30 H 0.276 0.724 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.360 0.640 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.127 -9.649 -18.336 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.027 4.027 4 C -0.014 4.014 5 N -0.157 5.157 6 C -0.109 4.109 7 N -0.174 5.174 8 N -0.178 5.178 9 C -0.226 4.226 10 S 0.244 5.756 11 C -0.252 4.252 12 C 0.189 3.811 13 H 0.056 0.944 14 O -0.374 6.374 15 C -0.626 4.626 16 H 0.079 0.921 17 C -0.171 4.171 18 N -0.531 5.531 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.194 1.194 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.124 0.876 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.165 0.835 29 H 0.119 0.881 30 H 0.291 0.709 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.206 0.794 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.719 -10.071 -17.457 20.949 hybrid contribution 0.017 1.441 -0.091 1.444 sum -5.702 -8.630 -17.548 20.369 Atomic orbital electron populations 1.22984 0.78703 1.04359 1.00928 1.87759 1.21944 1.26464 1.95653 1.22662 0.92509 0.85825 1.01725 1.21878 0.92538 0.78746 1.08219 1.46687 1.47280 1.16791 1.04955 1.27685 0.98307 0.88735 0.96219 1.73850 1.20737 1.19786 1.03051 1.74691 1.20088 1.18800 1.04254 1.27291 1.05046 0.92511 0.97726 1.85686 1.77976 1.25934 0.86003 1.24414 1.04184 0.96032 1.00542 1.18961 0.80890 0.96191 0.85082 0.94448 1.86522 1.19118 1.47678 1.84123 1.21839 1.44563 1.03298 0.92871 0.92078 1.25837 0.93869 0.99457 0.97911 1.70182 1.43145 1.33531 1.06234 0.85580 0.79113 0.79542 0.77175 1.19241 1.20687 1.19441 0.93918 0.92551 0.87627 0.93761 0.91031 0.83465 0.88136 0.70899 0.89882 0.89870 0.79445 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -6.95 10.70 -148.98 -1.59 -8.55 16 3 C 0.05 0.86 6.26 71.98 0.45 1.31 16 4 C 0.11 1.75 6.39 86.38 0.55 2.30 16 5 N -0.46 -10.77 2.81 -527.79 -1.48 -12.25 16 6 C 0.18 3.86 12.80 179.77 2.30 6.16 16 7 N -0.34 -10.99 12.17 -59.32 -0.72 -11.71 16 8 N -0.33 -12.70 11.60 -56.86 -0.66 -13.36 16 9 C 0.15 4.96 8.07 179.55 1.45 6.41 16 10 S 0.01 0.52 21.56 -56.49 -1.22 -0.70 16 11 C -0.10 -4.33 4.87 71.98 0.35 -3.98 16 12 C 0.25 12.51 2.87 29.85 0.09 12.60 16 13 H 0.04 2.09 8.14 -2.39 -0.02 2.08 16 14 O -0.57 -28.60 12.32 -148.98 -1.84 -30.44 16 15 C -0.59 -31.95 8.76 25.60 0.22 -31.72 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C 0.03 1.81 5.40 84.65 0.46 2.27 16 18 N -0.89 -52.31 12.84 21.45 0.28 -52.04 16 19 Si 0.96 42.98 29.54 68.60 2.03 45.00 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 1.84 8.01 -2.39 -0.02 1.82 16 30 H 0.28 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.08 3.53 8.14 -2.40 -0.02 3.51 16 32 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 33 H 0.36 16.02 9.04 -74.06 -0.67 15.35 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -72.11 315.75 2.35 -69.77 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.44 Total: 17.36 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 7.12 Total: -3.09 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -2.59 Total: -89.36 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -3.43 Total: -38.99 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -1.22 Total: -0.70 kcal Total: -72.11 2.35 -69.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346402552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.962 kcal (2) G-P(sol) polarization free energy of solvation -72.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds