Wall clock time and date at job start Mon Mar 30 2020 00:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34875 * 119.50466 * 2 1 4 4 C 1.37942 * 120.43797 * 180.30276 * 3 2 1 5 5 C 1.47883 * 120.24556 * 179.69276 * 4 3 2 6 6 C 1.40087 * 119.86720 * 114.72906 * 5 4 3 7 7 C 1.36155 * 120.17811 * 180.02562 * 6 5 4 8 8 C 1.40967 * 119.90280 * 359.97438 * 7 6 5 9 9 C 1.40920 * 120.12696 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99658 * 205.37044 * 9 8 7 11 11 C 1.39923 * 120.00095 * 25.37468 * 9 8 7 12 12 N 1.30869 * 119.99704 * 26.61014 * 11 9 8 13 13 Si 1.86800 * 119.99942 * 206.60293 * 11 9 8 14 14 H 1.48503 * 109.47015 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.47080 * 300.00452 * 13 11 9 16 16 H 1.48502 * 109.46907 * 60.00293 * 13 11 9 17 17 C 1.41197 * 119.74097 * 0.27090 * 8 7 6 18 18 F 1.35094 * 120.08906 * 179.70167 * 17 8 7 19 19 C 1.36509 * 119.81658 * 359.48892 * 17 8 7 20 20 C 1.41426 * 119.50698 * 359.42752 * 4 3 2 21 21 C 1.36051 * 119.05961 * 0.26966 * 20 4 3 22 22 C 1.34553 * 119.49811 * 179.70311 * 2 1 3 23 23 O 1.22001 * 119.75985 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47717 * 180.30217 * 1 2 3 25 25 H 1.09007 * 109.46564 * 300.30186 * 1 2 3 26 26 H 1.09005 * 109.47211 * 60.29468 * 1 2 3 27 27 H 1.08000 * 119.78481 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.91065 * 0.02562 * 6 5 4 29 29 H 1.08003 * 120.04738 * 179.97438 * 7 6 5 30 30 H 0.96991 * 120.00604 * 5.87965 * 12 11 9 31 31 H 1.08005 * 119.94966 * 180.22527 * 19 17 8 32 32 H 1.08004 * 120.46972 * 180.24477 * 20 4 3 33 33 H 1.07996 * 120.24340 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1293 1.1738 0.0000 4 6 3.5085 1.1963 -0.0063 5 6 4.2324 2.4858 -0.0131 6 6 5.0221 2.8484 1.0858 7 6 5.6909 4.0343 1.0864 8 6 5.5888 4.8993 -0.0220 9 6 6.2786 6.1281 -0.0261 10 1 5.9152 6.9493 -0.6262 11 6 7.4343 6.2843 0.7471 12 7 8.1679 5.2423 1.0452 13 14 7.9302 7.9801 1.3536 14 1 9.1827 7.8761 2.1447 15 1 8.1527 8.8762 0.1906 16 1 6.8496 8.5359 2.2072 17 6 4.7878 4.5325 -1.1254 18 9 4.6801 5.3588 -2.1887 19 6 4.1259 3.3386 -1.1165 20 6 4.2250 -0.0230 -0.0005 21 6 3.5346 -1.1952 0.0057 22 6 2.1275 -1.1711 0.0061 23 8 1.5039 -2.2197 0.0120 24 1 -0.3634 -1.0276 0.0054 25 1 -0.3633 0.5186 0.8874 26 1 -0.3634 0.5093 -0.8927 27 1 1.5777 2.1024 0.0004 28 1 5.1005 2.1854 1.9347 29 1 6.2988 4.3119 1.9349 30 1 7.9595 4.3765 0.6609 31 1 3.5154 3.0542 -1.9609 32 1 5.3051 -0.0235 -0.0013 33 1 4.0624 -2.1374 0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240333486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:00 Heat of formation + Delta-G solvation = -42.075449 kcal Electronic energy + Delta-G solvation = -19716.215979 eV Core-core repulsion = 16427.935760 eV Total energy + Delta-G solvation = -3288.280218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.091 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.43924 -41.08530 -38.00090 -36.57809 -34.89042 -33.83582 -30.74722 -29.48433 -28.59611 -27.56109 -25.21977 -23.50318 -22.47971 -21.28967 -20.66332 -18.23323 -17.30595 -17.09553 -16.31461 -15.91757 -15.31784 -15.17734 -14.89657 -14.26480 -14.19974 -14.03120 -13.66711 -13.26184 -12.93646 -12.76829 -12.62328 -12.21571 -12.07142 -11.87520 -11.42620 -11.18315 -10.92560 -10.81372 -10.52332 -10.16552 -9.90919 -9.80440 -9.73029 -9.22653 -8.02556 -7.83672 -7.52215 -7.37372 -4.68474 1.02958 1.94926 2.43401 2.55038 2.81202 3.03995 3.10714 3.24530 3.82213 3.83310 4.24883 4.73592 4.83674 5.08310 5.13360 5.14908 5.27843 5.42829 5.53783 5.58087 5.75796 5.90828 6.07557 6.18776 6.30990 6.54614 6.61341 6.72008 6.80142 7.11642 7.19150 7.32133 7.46867 7.56348 7.62831 7.78095 7.97899 8.17085 8.41372 8.54124 9.74589 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.004146 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.501349 B = 6751.570712 C = 7112.722070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.493 5.493 3 C 0.112 3.888 4 C -0.100 4.100 5 C -0.184 4.184 6 C -0.060 4.060 7 C -0.209 4.209 8 C 0.076 3.924 9 C -0.495 4.495 10 H 0.084 0.916 11 C 0.039 3.961 12 N -0.776 5.776 13 Si 1.067 2.933 14 H -0.271 1.271 15 H -0.273 1.273 16 H -0.271 1.271 17 C -0.035 4.035 18 F -0.163 7.163 19 C -0.086 4.086 20 C 0.003 3.997 21 C -0.257 4.257 22 C 0.507 3.493 23 O -0.574 6.574 24 H 0.100 0.900 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.161 0.839 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.302 0.698 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.975 -3.339 0.425 7.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.202 5.202 3 C -0.015 4.015 4 C -0.105 4.105 5 C -0.186 4.186 6 C -0.078 4.078 7 C -0.229 4.229 8 C 0.072 3.928 9 C -0.521 4.521 10 H 0.102 0.898 11 C -0.185 4.185 12 N -0.397 5.397 13 Si 0.889 3.111 14 H -0.195 1.195 15 H -0.198 1.198 16 H -0.197 1.197 17 C -0.055 4.055 18 F -0.142 7.142 19 C -0.105 4.105 20 C -0.019 4.019 21 C -0.279 4.279 22 C 0.311 3.689 23 O -0.460 6.460 24 H 0.119 0.881 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.178 0.822 28 H 0.115 0.885 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.152 0.848 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.268 -3.227 1.324 7.173 hybrid contribution -1.112 -0.609 -1.202 1.747 sum -7.380 -3.836 0.122 8.318 Atomic orbital electron populations 1.22157 0.77866 1.05841 1.02991 1.45003 1.08997 1.06961 1.59274 1.22354 0.93388 0.88849 0.96864 1.18406 0.90427 0.93862 1.07830 1.17267 1.09176 0.94676 0.97507 1.20402 0.95512 0.95946 0.95983 1.20647 1.07068 0.96614 0.98524 1.17736 0.91850 0.93415 0.89832 1.20623 1.08994 0.98359 1.24148 0.89776 1.27192 0.92810 1.05916 0.92609 1.70483 1.33853 1.03224 1.32129 0.83602 0.77476 0.72356 0.77660 1.19539 1.19799 1.19655 1.17292 1.10609 0.91195 0.86431 1.91287 1.95725 1.72215 1.54973 1.20283 0.99430 0.93226 0.97564 1.21791 1.00898 0.91210 0.88040 1.21955 0.92454 0.99857 1.13628 1.17159 0.89471 0.82618 0.79622 1.90875 1.69669 1.30203 1.55227 0.88120 0.90482 0.90518 0.82191 0.88475 0.86868 0.88387 0.88038 0.84771 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 10.55 59.85 0.63 1.17 16 2 N -0.49 -6.81 2.96 -126.67 -0.37 -7.19 16 3 C 0.11 1.55 10.05 -16.32 -0.16 1.39 16 4 C -0.10 -1.60 5.30 -104.84 -0.56 -2.15 16 5 C -0.18 -3.48 5.34 -104.65 -0.56 -4.03 16 6 C -0.06 -1.19 9.67 -39.64 -0.38 -1.58 16 7 C -0.21 -4.76 7.92 -39.30 -0.31 -5.07 16 8 C 0.08 1.85 5.30 -106.73 -0.57 1.29 16 9 C -0.49 -12.36 8.68 -37.94 -0.33 -12.69 16 10 H 0.08 2.11 7.80 -52.48 -0.41 1.70 16 11 C 0.04 0.91 4.90 -17.33 -0.08 0.83 16 12 N -0.78 -18.89 12.31 55.55 0.68 -18.21 16 13 Si 1.07 19.88 30.01 -169.99 -5.10 14.78 16 14 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 15 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 16 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 17 C -0.04 -0.83 7.25 -39.08 -0.28 -1.11 16 18 F -0.16 -3.89 16.70 2.25 0.04 -3.86 16 19 C -0.09 -1.75 9.63 -39.60 -0.38 -2.13 16 20 C 0.00 0.04 9.81 -39.15 -0.38 -0.35 16 21 C -0.26 -3.86 9.97 -39.43 -0.39 -4.25 16 22 C 0.51 8.33 7.40 -15.42 -0.11 8.21 16 23 O -0.57 -10.94 16.34 4.92 0.08 -10.86 16 24 H 0.10 1.13 6.83 -51.93 -0.35 0.78 16 25 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.16 1.89 8.05 -52.49 -0.42 1.46 16 28 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.11 2.65 6.52 -52.48 -0.34 2.30 16 30 H 0.30 7.52 6.79 -40.82 -0.28 7.24 16 31 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 32 H 0.13 1.84 8.06 -52.48 -0.42 1.41 16 33 H 0.14 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 295.91 15.07 4.46 4.46 Total: -1.00 -28.10 295.91 -7.23 -35.33 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.14 Total: 6.02 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -3.88 Total: -20.48 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.31 Total: -25.40 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.10 Total: 14.78 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.10 -7.23 -35.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240333486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.746 kcal (2) G-P(sol) polarization free energy of solvation -28.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds