Wall clock time and date at job start Mon Mar 30 2020 00:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34875 * 119.50466 * 2 1 4 4 C 1.37942 * 120.43797 * 180.30276 * 3 2 1 5 5 C 1.47883 * 120.24556 * 179.69276 * 4 3 2 6 6 C 1.40087 * 119.86720 * 114.72906 * 5 4 3 7 7 C 1.36155 * 120.17811 * 180.02562 * 6 5 4 8 8 C 1.40967 * 119.90280 * 359.97438 * 7 6 5 9 9 C 1.40920 * 120.12696 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99658 * 205.37044 * 9 8 7 11 11 C 1.39923 * 120.00095 * 25.37468 * 9 8 7 12 12 N 1.30869 * 119.99704 * 26.61014 * 11 9 8 13 13 Si 1.86800 * 119.99942 * 206.60293 * 11 9 8 14 14 H 1.48503 * 109.47015 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.47080 * 300.00452 * 13 11 9 16 16 H 1.48502 * 109.46907 * 60.00293 * 13 11 9 17 17 C 1.41197 * 119.74097 * 0.27090 * 8 7 6 18 18 F 1.35094 * 120.08906 * 179.70167 * 17 8 7 19 19 C 1.36509 * 119.81658 * 359.48892 * 17 8 7 20 20 C 1.41426 * 119.50698 * 359.42752 * 4 3 2 21 21 C 1.36051 * 119.05961 * 0.26966 * 20 4 3 22 22 C 1.34553 * 119.49811 * 179.70311 * 2 1 3 23 23 O 1.22001 * 119.75985 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47717 * 180.30217 * 1 2 3 25 25 H 1.09007 * 109.46564 * 300.30186 * 1 2 3 26 26 H 1.09005 * 109.47211 * 60.29468 * 1 2 3 27 27 H 1.08000 * 119.78481 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.91065 * 0.02562 * 6 5 4 29 29 H 1.08003 * 120.04738 * 179.97438 * 7 6 5 30 30 H 0.96991 * 120.00604 * 5.87965 * 12 11 9 31 31 H 1.08005 * 119.94966 * 180.22527 * 19 17 8 32 32 H 1.08004 * 120.46972 * 180.24477 * 20 4 3 33 33 H 1.07996 * 120.24340 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1293 1.1738 0.0000 4 6 3.5085 1.1963 -0.0063 5 6 4.2324 2.4858 -0.0131 6 6 5.0221 2.8484 1.0858 7 6 5.6909 4.0343 1.0864 8 6 5.5888 4.8993 -0.0220 9 6 6.2786 6.1281 -0.0261 10 1 5.9152 6.9493 -0.6262 11 6 7.4343 6.2843 0.7471 12 7 8.1679 5.2423 1.0452 13 14 7.9302 7.9801 1.3536 14 1 9.1827 7.8761 2.1447 15 1 8.1527 8.8762 0.1906 16 1 6.8496 8.5359 2.2072 17 6 4.7878 4.5325 -1.1254 18 9 4.6801 5.3588 -2.1887 19 6 4.1259 3.3386 -1.1165 20 6 4.2250 -0.0230 -0.0005 21 6 3.5346 -1.1952 0.0057 22 6 2.1275 -1.1711 0.0061 23 8 1.5039 -2.2197 0.0120 24 1 -0.3634 -1.0276 0.0054 25 1 -0.3633 0.5186 0.8874 26 1 -0.3634 0.5093 -0.8927 27 1 1.5777 2.1024 0.0004 28 1 5.1005 2.1854 1.9347 29 1 6.2988 4.3119 1.9349 30 1 7.9595 4.3765 0.6609 31 1 3.5154 3.0542 -1.9609 32 1 5.3051 -0.0235 -0.0013 33 1 4.0624 -2.1374 0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240333486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:00 Heat of formation + Delta-G solvation = -55.880080 kcal Electronic energy + Delta-G solvation = -19716.814592 eV Core-core repulsion = 16427.935760 eV Total energy + Delta-G solvation = -3288.878832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.091 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.27788 -42.28563 -39.64617 -37.94609 -36.31839 -35.25374 -32.26323 -31.19224 -30.01495 -28.63709 -26.80388 -24.76461 -23.81186 -22.98291 -22.20609 -19.98757 -18.60054 -18.31504 -17.68123 -17.12899 -16.83222 -16.66505 -16.59217 -16.09305 -15.65943 -15.29159 -15.03566 -14.64826 -14.41857 -14.25217 -13.78496 -13.66249 -13.48781 -13.21198 -12.91925 -12.59542 -12.42072 -12.38242 -11.95949 -11.82723 -11.44969 -11.07561 -11.01487 -10.91606 -9.69122 -9.57217 -9.22932 -8.76978 -6.51838 -0.11006 0.51761 0.79598 0.92388 1.51952 1.60293 1.72798 1.81238 2.29847 2.52131 2.65667 3.32373 3.61463 3.79462 3.94124 4.05773 4.15319 4.22683 4.31098 4.42881 4.46841 4.54571 4.76344 4.86726 4.98907 5.05695 5.09973 5.34836 5.36289 5.47976 5.63977 5.68169 5.77054 5.91402 6.02037 6.05990 6.23614 6.63603 6.76540 6.95031 7.93032 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.004146 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.501349 B = 6751.570712 C = 7112.722070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.488 5.488 3 C 0.144 3.856 4 C -0.130 4.130 5 C -0.146 4.146 6 C -0.060 4.060 7 C -0.216 4.216 8 C 0.050 3.950 9 C -0.541 4.541 10 H 0.069 0.931 11 C 0.011 3.989 12 N -0.798 5.798 13 Si 1.114 2.886 14 H -0.267 1.267 15 H -0.262 1.262 16 H -0.261 1.261 17 C -0.063 4.063 18 F -0.172 7.172 19 C -0.083 4.083 20 C 0.010 3.990 21 C -0.265 4.265 22 C 0.496 3.504 23 O -0.608 6.608 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.190 0.810 28 H 0.123 0.877 29 H 0.100 0.900 30 H 0.288 0.712 31 H 0.127 0.873 32 H 0.144 0.856 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.589 -3.897 0.766 9.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.195 5.195 3 C 0.015 3.985 4 C -0.135 4.135 5 C -0.148 4.148 6 C -0.078 4.078 7 C -0.235 4.235 8 C 0.047 3.953 9 C -0.568 4.568 10 H 0.087 0.913 11 C -0.208 4.208 12 N -0.420 5.420 13 Si 0.931 3.069 14 H -0.191 1.191 15 H -0.187 1.187 16 H -0.185 1.185 17 C -0.083 4.083 18 F -0.151 7.151 19 C -0.102 4.102 20 C -0.012 4.012 21 C -0.286 4.286 22 C 0.301 3.699 23 O -0.496 6.496 24 H 0.106 0.894 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.207 0.793 28 H 0.141 0.859 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.145 0.855 32 H 0.162 0.838 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.913 -3.796 1.653 8.930 hybrid contribution -0.855 -0.651 -1.352 1.727 sum -8.768 -4.447 0.301 9.836 Atomic orbital electron populations 1.22475 0.75380 1.05927 1.05680 1.45141 1.10646 1.06251 1.57457 1.22617 0.92844 0.89702 0.93320 1.18210 0.91395 0.92599 1.11308 1.17482 1.06705 0.94864 0.95756 1.20700 0.94727 0.95152 0.97222 1.20635 1.07523 0.97589 0.97792 1.18046 0.92545 0.93959 0.90789 1.20690 1.10752 0.98742 1.26588 0.91298 1.28410 0.92056 1.08457 0.91855 1.70592 1.34540 1.03075 1.33748 0.83033 0.77483 0.68686 0.77724 1.19108 1.18667 1.18515 1.17655 1.11907 0.92435 0.86311 1.91252 1.95866 1.72745 1.55264 1.20571 0.98921 0.92018 0.98716 1.21779 1.01405 0.90655 0.87393 1.22010 0.92091 1.00423 1.14080 1.17416 0.90001 0.82880 0.79602 1.90862 1.70366 1.31439 1.56940 0.89383 0.87804 0.87845 0.79292 0.85949 0.88167 0.89933 0.85525 0.83797 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.75 10.55 127.77 1.35 2.09 16 2 N -0.49 -11.64 2.96 -672.87 -1.99 -13.63 16 3 C 0.14 3.32 10.05 84.16 0.85 4.17 16 4 C -0.13 -3.67 5.30 -20.01 -0.11 -3.78 16 5 C -0.15 -5.10 5.34 -19.88 -0.11 -5.21 16 6 C -0.06 -2.27 9.67 22.23 0.21 -2.06 16 7 C -0.22 -9.89 7.92 22.45 0.18 -9.71 16 8 C 0.05 2.51 5.30 -21.23 -0.11 2.40 16 9 C -0.54 -28.12 8.68 23.34 0.20 -27.92 16 10 H 0.07 3.64 7.80 -2.91 -0.02 3.62 16 11 C 0.01 0.52 4.90 85.24 0.42 0.94 16 12 N -0.80 -40.13 12.31 21.83 0.27 -39.87 16 13 Si 1.11 40.67 30.01 68.60 2.06 42.72 16 14 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 15 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 16 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 17 C -0.06 -2.97 7.25 22.59 0.16 -2.81 16 18 F -0.17 -8.35 16.70 44.97 0.75 -7.60 16 19 C -0.08 -3.22 9.63 22.26 0.21 -3.00 16 20 C 0.01 0.26 9.81 22.55 0.22 0.48 16 21 C -0.26 -7.30 9.97 22.37 0.22 -7.08 16 22 C 0.50 15.04 7.40 84.88 0.63 15.67 16 23 O -0.61 -22.23 16.34 -5.32 -0.09 -22.32 16 24 H 0.09 1.75 6.83 -2.39 -0.02 1.73 16 25 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.19 3.35 8.05 -2.91 -0.02 3.33 16 28 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 29 H 0.10 4.81 6.52 -2.91 -0.02 4.79 16 30 H 0.29 14.95 6.79 -92.71 -0.63 14.32 16 31 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 33 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -62.70 295.91 6.61 -56.09 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 1.28 Total: 20.41 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 4.33 Total: -35.81 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -1.72 Total: -53.50 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.09 Total: -22.32 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 0.75 Total: -7.60 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.06 Total: 42.72 kcal Total: -62.70 6.61 -56.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240333486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.210 kcal (2) G-P(sol) polarization free energy of solvation -62.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds