Wall clock time and date at job start Mon Mar 30 2020 01:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35958 * 116.99908 * 2 1 4 4 C 1.38444 * 120.00533 * 0.25320 * 3 2 1 5 5 C 1.39289 * 119.84791 * 180.27629 * 4 3 2 6 6 C 1.48405 * 120.07102 * 179.72115 * 5 4 3 7 7 C 1.39714 * 120.41305 * 359.44748 * 6 5 4 8 8 N 1.31910 * 121.14968 * 180.29409 * 7 6 5 9 9 C 1.31519 * 122.12287 * 359.95821 * 8 7 6 10 10 C 1.40771 * 120.66490 * 0.04202 * 9 8 7 11 11 C 1.41436 * 120.60230 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00167 * 155.58348 * 11 10 9 13 13 C 1.39931 * 120.00058 * 335.57790 * 11 10 9 14 14 N 1.30826 * 120.00073 * 342.36003 * 13 11 10 15 15 Si 1.86806 * 120.00055 * 162.35843 * 13 11 10 16 16 H 1.48500 * 109.47008 * 94.67782 * 15 13 11 17 17 H 1.48501 * 109.46760 * 214.67307 * 15 13 11 18 18 H 1.48489 * 109.47023 * 334.67413 * 15 13 11 19 19 C 1.39136 * 120.40853 * 179.72258 * 6 5 4 20 20 C 1.39352 * 119.85517 * 359.44641 * 5 4 3 21 21 C 1.38030 * 120.00413 * 0.28001 * 20 5 4 22 22 C 1.38425 * 120.15562 * 0.02562 * 21 20 5 23 23 F 1.35095 * 119.92902 * 179.97438 * 22 21 20 24 24 H 1.08991 * 109.47010 * 300.00240 * 1 2 3 25 25 H 1.09000 * 109.46726 * 60.00103 * 1 2 3 26 26 H 1.08999 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.07808 * 359.97438 * 4 3 2 28 28 H 1.08008 * 119.42215 * 0.25244 * 7 6 5 29 29 H 1.07999 * 119.66967 * 180.02562 * 9 8 7 30 30 H 0.97001 * 120.00410 * 179.97438 * 14 13 11 31 31 H 1.08003 * 120.95898 * 359.75085 * 19 6 5 32 32 H 1.08000 * 119.99953 * 180.25510 * 20 5 4 33 33 H 1.08007 * 119.92465 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3725 0.0053 5 6 1.9280 3.6119 -0.0005 6 6 1.1247 4.8597 -0.0012 7 6 -0.2713 4.8022 -0.0075 8 7 -0.9995 5.9020 -0.0139 9 6 -0.4569 7.1000 -0.0139 10 6 0.9423 7.2545 -0.0078 11 6 1.5245 8.5435 -0.0083 12 1 2.5211 8.6861 0.3826 13 6 0.8092 9.6340 -0.5153 14 7 -0.2262 9.4342 -1.2897 15 14 1.3326 11.3752 -0.0865 16 1 2.2180 11.9033 -1.1554 17 1 0.1302 12.2386 0.0317 18 1 2.0657 11.3678 1.2048 19 6 1.7524 6.1014 -0.0012 20 6 3.3200 3.6775 0.0000 21 6 4.0658 2.5161 0.0004 22 6 3.4343 1.2842 -0.0002 23 9 4.1688 0.1503 -0.0002 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2137 2.3176 0.0090 28 1 -0.7626 3.8403 -0.0078 29 1 -1.0911 7.9742 -0.0189 30 1 -0.7223 10.1901 -1.6410 31 1 2.8296 6.1794 0.0033 32 1 3.8153 4.6373 -0.0004 33 1 5.1446 2.5685 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241418864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:43 Heat of formation + Delta-G solvation = -38.187491 kcal Electronic energy + Delta-G solvation = -19593.667768 eV Core-core repulsion = 16305.556144 eV Total energy + Delta-G solvation = -3288.111624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.091 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.58444 -39.95665 -38.54041 -37.10040 -34.15651 -32.19017 -30.93300 -30.04871 -28.41844 -27.04594 -25.74899 -23.13802 -22.77903 -20.98497 -20.76084 -18.28252 -17.37034 -16.77214 -16.59297 -16.04045 -15.78628 -15.26047 -14.93278 -14.63026 -14.48114 -14.08233 -13.89951 -13.20595 -12.79972 -12.69981 -12.37636 -12.10246 -11.85158 -11.70430 -11.39630 -11.27115 -11.11325 -11.00689 -10.90337 -10.71068 -10.23461 -9.50143 -9.19349 -8.41714 -8.17969 -7.93564 -7.28094 -7.02353 -4.62309 1.06758 1.43726 2.57087 2.75179 2.96918 3.00381 3.08003 3.18604 3.76913 3.92489 4.40589 4.50623 4.84030 4.94763 5.14621 5.17262 5.34278 5.36339 5.47941 5.53548 5.61124 5.89092 6.09259 6.14119 6.27946 6.39384 6.47843 6.56778 6.76653 6.93220 6.97373 7.12365 7.35875 7.43939 7.58289 7.90166 8.17158 8.53037 8.57713 9.54747 9.94574 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.004138 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.731924 B = 6764.949821 C = 7550.841844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.096 3.904 4 C -0.183 4.183 5 C 0.024 3.976 6 C -0.089 4.089 7 C -0.023 4.023 8 N -0.477 5.477 9 C 0.053 3.947 10 C 0.061 3.939 11 C -0.450 4.450 12 H 0.083 0.917 13 C 0.075 3.925 14 N -0.787 5.787 15 Si 0.914 3.086 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.259 1.259 19 C -0.176 4.176 20 C -0.127 4.127 21 C -0.112 4.112 22 C 0.046 3.954 23 F -0.140 7.140 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.141 0.859 28 H 0.119 0.881 29 H 0.152 0.848 30 H 0.287 0.713 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 -9.004 1.684 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.051 3.949 4 C -0.201 4.201 5 C 0.022 3.978 6 C -0.091 4.091 7 C -0.178 4.178 8 N -0.184 5.184 9 C -0.111 4.111 10 C 0.057 3.943 11 C -0.479 4.479 12 H 0.101 0.899 13 C -0.144 4.144 14 N -0.411 5.411 15 Si 0.737 3.263 16 H -0.194 1.194 17 H -0.198 1.198 18 H -0.182 1.182 19 C -0.201 4.201 20 C -0.145 4.145 21 C -0.131 4.131 22 C 0.026 3.974 23 F -0.119 7.119 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.158 0.842 28 H 0.137 0.863 29 H 0.169 0.831 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.156 0.844 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.194 -9.236 1.530 9.616 hybrid contribution 1.005 0.815 0.005 1.295 sum 3.199 -8.421 1.535 9.138 Atomic orbital electron populations 1.23101 0.78082 1.03864 1.01907 1.86086 1.21635 1.26029 1.89045 1.18861 0.90668 0.85346 1.00060 1.21233 1.00497 0.90641 1.07776 1.18852 0.92735 0.92361 0.93814 1.19236 0.94222 0.91290 1.04353 1.21806 0.89241 0.95883 1.10851 1.67149 1.41237 0.99147 1.10895 1.23130 0.93347 0.93209 1.01428 1.18486 0.93083 0.93086 0.89660 1.19545 1.02104 0.91207 1.35064 0.89857 1.25988 0.93955 1.02190 0.92315 1.69755 1.15530 1.34552 1.21295 0.86198 0.79319 0.80500 0.80249 1.19363 1.19751 1.18219 1.21423 0.98378 0.91160 1.09138 1.21109 0.93101 0.98165 1.02163 1.20883 1.00654 0.90089 1.01482 1.16936 0.85876 0.82763 1.11813 1.91447 1.76689 1.49145 1.94648 0.92312 0.92301 0.88226 0.84180 0.86318 0.83059 0.90209 0.87322 0.84403 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.59 10.36 -19.61 -0.20 -4.79 16 3 C 0.10 1.52 6.69 -39.22 -0.26 1.26 16 4 C -0.18 -2.95 8.42 -39.11 -0.33 -3.28 16 5 C 0.02 0.42 5.87 -104.90 -0.62 -0.19 16 6 C -0.09 -1.89 5.88 -104.83 -0.62 -2.51 16 7 C -0.02 -0.52 10.60 -16.97 -0.18 -0.69 16 8 N -0.48 -11.77 10.32 -12.28 -0.13 -11.90 16 9 C 0.05 1.35 9.89 -16.73 -0.17 1.18 16 10 C 0.06 1.54 5.58 -106.71 -0.60 0.95 16 11 C -0.45 -11.02 9.08 -37.73 -0.34 -11.36 16 12 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 13 C 0.07 1.74 5.15 -17.35 -0.09 1.65 16 14 N -0.79 -19.07 10.96 55.55 0.61 -18.46 16 15 Si 0.91 17.27 29.59 -169.99 -5.03 12.24 16 16 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 17 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 18 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 19 C -0.18 -4.00 9.29 -38.24 -0.36 -4.35 16 20 C -0.13 -2.03 9.43 -39.24 -0.37 -2.40 16 21 C -0.11 -1.61 10.01 -39.59 -0.40 -2.01 16 22 C 0.05 0.72 7.31 -39.23 -0.29 0.43 16 23 F -0.14 -2.23 17.10 2.25 0.04 -2.20 16 24 H 0.06 0.57 7.65 -51.93 -0.40 0.18 16 25 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.14 2.06 4.45 -52.49 -0.23 1.82 16 28 H 0.12 2.27 6.20 -52.48 -0.33 1.95 16 29 H 0.15 3.95 6.15 -52.49 -0.32 3.63 16 30 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 31 H 0.11 2.23 6.30 -52.48 -0.33 1.89 16 32 H 0.14 2.06 6.25 -52.49 -0.33 1.74 16 33 H 0.14 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 289.75 15.07 4.37 4.37 Total: -1.00 -27.48 289.75 -6.69 -34.17 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -2.73 Total: 6.63 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -3.61 Total: -20.06 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 0.48 Total: -30.36 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.20 Total: -4.79 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.48 -6.69 -34.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241418864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.018 kcal (2) G-P(sol) polarization free energy of solvation -27.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds