Wall clock time and date at job start Mon Mar 30 2020 00:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99905 * 2 1 4 4 H 1.48504 * 109.47151 * 269.99950 * 3 2 1 5 5 H 1.48495 * 109.47448 * 30.00315 * 3 2 1 6 6 H 1.48498 * 109.46582 * 150.00620 * 3 2 1 7 7 C 1.38722 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99836 * 359.97438 * 7 2 1 9 9 O 1.34776 * 119.99668 * 179.97438 * 7 2 1 10 10 C 1.35568 * 116.99938 * 185.05600 * 9 7 2 11 11 C 1.39177 * 119.89865 * 354.44635 * 10 9 7 12 12 C 1.37596 * 120.10388 * 180.02562 * 11 10 9 13 13 C 1.40030 * 119.89924 * 359.97438 * 12 11 10 14 14 C 1.46953 * 120.10052 * 180.02562 * 13 12 11 15 15 C 1.35025 * 119.99703 * 179.97438 * 14 13 12 16 16 C 1.46259 * 120.00090 * 180.02562 * 15 14 13 17 17 O 1.21729 * 119.99613 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00229 * 180.02562 * 16 15 14 19 19 C 1.46495 * 120.00069 * 179.72776 * 18 16 15 20 20 C 1.52996 * 117.49862 * 223.61838 * 19 18 16 21 21 C 1.52992 * 60.00085 * 252.50763 * 20 19 18 22 22 C 1.40029 * 119.79429 * 0.28375 * 13 12 11 23 23 C 1.37596 * 119.89291 * 359.41998 * 22 13 12 24 24 H 0.97006 * 119.99480 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.95054 * 359.97321 * 11 10 9 26 26 H 1.08001 * 120.05118 * 180.02562 * 12 11 10 27 27 H 1.08002 * 120.00439 * 0.02562 * 14 13 12 28 28 H 1.07994 * 120.00137 * 0.02562 * 15 14 13 29 29 H 0.97002 * 119.99538 * 359.97438 * 18 16 15 30 30 H 1.09001 * 115.55232 * 9.32322 * 19 18 16 31 31 H 1.09008 * 117.49712 * 359.97438 * 20 19 18 32 32 H 1.09003 * 117.50133 * 145.01543 * 20 19 18 33 33 H 1.09005 * 117.49905 * 252.50906 * 21 20 19 34 34 H 1.09006 * 117.52359 * 107.47814 * 21 20 19 35 35 H 1.08001 * 120.04743 * 179.72006 * 22 13 12 36 36 H 1.08009 * 119.94397 * 180.27818 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0087 -1.2014 -0.0005 8 1 1.4687 -2.1366 -0.0005 9 8 3.3565 -1.2014 -0.0011 10 6 3.9719 -2.4046 -0.1080 11 6 3.2169 -3.5737 -0.0942 12 6 3.8372 -4.7971 -0.2020 13 6 5.2303 -4.8649 -0.3262 14 6 5.8973 -6.1692 -0.4421 15 6 7.2407 -6.2320 -0.5624 16 6 7.9046 -7.5301 -0.6783 17 8 7.2460 -8.5537 -0.6669 18 7 9.2456 -7.5929 -0.7978 19 6 9.9111 -8.8933 -0.9080 20 6 11.1844 -9.1071 -0.0871 21 6 11.2727 -8.9335 -1.6046 22 6 5.9863 -3.6862 -0.3342 23 6 5.3567 -2.4670 -0.2320 24 1 -0.4850 0.8401 0.0004 25 1 2.1424 -3.5206 0.0021 26 1 3.2504 -5.7038 -0.1915 27 1 5.3130 -7.0774 -0.4320 28 1 7.8250 -5.3239 -0.5729 29 1 9.7704 -6.7771 -0.8073 30 1 9.2504 -9.7495 -1.0447 31 1 11.5272 -8.2799 0.5346 32 1 11.3616 -10.1040 0.3166 33 1 11.5080 -9.8161 -2.1993 34 1 11.6731 -7.9923 -1.9814 35 1 7.0614 -3.7339 -0.4252 36 1 5.9386 -1.5572 -0.2426 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015586846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:03 Heat of formation + Delta-G solvation = -16.667285 kcal Electronic energy + Delta-G solvation = -18915.206222 eV Core-core repulsion = 15751.488089 eV Total energy + Delta-G solvation = -3163.718132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02528 -40.69456 -38.67758 -37.97126 -34.77087 -34.24908 -33.66638 -32.00566 -29.86763 -27.47740 -25.14062 -23.81815 -23.25023 -22.82628 -21.87721 -20.70022 -19.68982 -19.14990 -18.39000 -17.41139 -16.68596 -16.43416 -15.86489 -15.75502 -15.73033 -15.51293 -15.35253 -14.98296 -14.39639 -14.25089 -14.06866 -13.64911 -13.40567 -13.18427 -12.73711 -12.63893 -12.49321 -12.35994 -12.33542 -11.93936 -11.45979 -11.30890 -11.16245 -11.01537 -10.67644 -9.91983 -9.73304 -8.74189 -8.53839 -6.25684 -0.29684 0.55000 1.08622 1.32694 1.37420 1.52532 2.16918 2.26230 2.27812 2.79290 2.99610 3.04209 3.15465 3.74120 3.84060 3.92056 4.04562 4.07985 4.09315 4.27145 4.32842 4.45585 4.62333 4.78202 4.83234 4.84489 5.03991 5.11840 5.20461 5.22521 5.27570 5.38485 5.53702 5.60300 5.70199 5.79399 5.83306 6.14239 6.57841 6.79249 7.26455 7.50440 8.56974 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.051292 B = 0.002696 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.767586 B =10382.044283 C =10846.314927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.404 4.404 8 H 0.084 0.916 9 O -0.233 6.233 10 C 0.136 3.864 11 C -0.244 4.244 12 C -0.046 4.046 13 C -0.161 4.161 14 C 0.012 3.988 15 C -0.238 4.238 16 C 0.550 3.450 17 O -0.596 6.596 18 N -0.687 5.687 19 C 0.048 3.952 20 C -0.185 4.185 21 C -0.172 4.172 22 C -0.039 4.039 23 C -0.194 4.194 24 H 0.286 0.714 25 H 0.113 0.887 26 H 0.138 0.862 27 H 0.121 0.879 28 H 0.159 0.841 29 H 0.418 0.582 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.168 0.832 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.878 -11.768 -1.814 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.480 4.480 8 H 0.101 0.899 9 O -0.139 6.139 10 C 0.086 3.914 11 C -0.263 4.263 12 C -0.064 4.064 13 C -0.162 4.162 14 C -0.008 4.008 15 C -0.259 4.259 16 C 0.342 3.658 17 O -0.480 6.480 18 N -0.336 5.336 19 C -0.058 4.058 20 C -0.223 4.223 21 C -0.210 4.210 22 C -0.057 4.057 23 C -0.213 4.213 24 H 0.096 0.904 25 H 0.131 0.869 26 H 0.156 0.844 27 H 0.139 0.861 28 H 0.176 0.824 29 H 0.255 0.745 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.185 0.815 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 22.317 -12.122 -1.788 25.459 hybrid contribution -0.582 0.833 0.072 1.019 sum 21.734 -11.289 -1.716 24.551 Atomic orbital electron populations 1.69711 1.07055 1.29858 1.49071 1.25352 0.95900 1.02371 0.95195 0.85192 0.78903 0.77108 0.79395 1.18951 1.19301 1.18305 1.20756 0.77948 0.96294 1.52985 0.89871 1.83458 1.21425 1.27552 1.81459 1.19944 0.93387 0.84929 0.93149 1.21225 1.00542 0.92963 1.11573 1.21292 0.94264 0.96638 0.94191 1.18814 0.92833 0.93219 1.11305 1.22174 0.94756 0.95250 0.88616 1.22762 0.95418 0.96606 1.11107 1.18604 0.82383 0.89682 0.75108 1.90778 1.65843 1.38195 1.53148 1.45128 1.06217 1.08942 1.73345 1.21630 0.89208 0.87742 1.07188 1.23501 0.99796 1.04431 0.94591 1.23464 0.97252 1.04987 0.95314 1.21364 1.00740 0.89500 0.94066 1.20502 0.90297 1.00033 1.10428 0.90381 0.86905 0.84411 0.86086 0.82376 0.74483 0.86781 0.87563 0.87414 0.87010 0.87075 0.81494 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.56 13.96 21.62 0.30 -53.26 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 0.97 43.71 28.62 68.60 1.96 45.67 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.40 -23.06 9.94 67.94 0.68 -22.38 16 8 H 0.08 4.99 5.41 -2.91 -0.02 4.97 16 9 O -0.23 -12.07 8.57 -20.18 -0.17 -12.24 16 10 C 0.14 6.04 6.66 22.72 0.15 6.19 16 11 C -0.24 -10.34 9.14 22.34 0.20 -10.13 16 12 C -0.05 -1.56 9.78 22.55 0.22 -1.34 16 13 C -0.16 -4.74 5.87 -20.13 -0.12 -4.86 16 14 C 0.01 0.31 9.45 23.82 0.23 0.53 16 15 C -0.24 -5.02 9.41 23.62 0.22 -4.79 16 16 C 0.55 13.17 7.74 86.33 0.67 13.84 16 17 O -0.60 -19.52 15.80 -4.44 -0.07 -19.59 16 18 N -0.69 -11.27 5.56 -446.92 -2.49 -13.76 16 19 C 0.05 0.76 6.43 44.99 0.29 1.05 16 20 C -0.18 -1.94 10.46 30.59 0.32 -1.62 16 21 C -0.17 -1.63 10.45 30.59 0.32 -1.31 16 22 C -0.04 -1.07 9.40 22.55 0.21 -0.86 16 23 C -0.19 -6.70 9.97 22.34 0.22 -6.47 16 24 H 0.29 15.30 8.31 -92.70 -0.77 14.53 16 25 H 0.11 5.28 5.62 -2.91 -0.02 5.26 16 26 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 27 H 0.12 3.28 7.52 -2.91 -0.02 3.26 16 28 H 0.16 2.23 6.06 -2.91 -0.02 2.21 16 29 H 0.42 4.05 8.81 -92.71 -0.82 3.23 16 30 H 0.11 2.34 7.40 -2.39 -0.02 2.32 16 31 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.11 0.77 8.14 -2.38 -0.02 0.76 16 35 H 0.17 3.00 6.16 -2.91 -0.02 2.98 16 36 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -69.74 318.01 3.92 -65.83 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.30 Total: 18.39 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 4.08 Total: -31.05 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -2.18 Total: -67.01 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.24 Total: -31.83 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.96 Total: 45.67 kcal Total: -69.74 3.92 -65.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015586846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.159 kcal (2) G-P(sol) polarization free energy of solvation -69.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds