Wall clock time and date at job start Mon Mar 30 2020 00:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31098 * 1 3 3 Si 1.86794 * 120.00128 * 2 1 4 4 H 1.48506 * 109.47252 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47149 * 119.99595 * 3 2 1 6 6 H 1.48506 * 109.47080 * 239.99857 * 3 2 1 7 7 C 1.39586 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00215 * 155.99285 * 7 2 1 9 9 N 1.34730 * 120.00068 * 335.98595 * 7 2 1 10 10 C 1.34720 * 125.43923 * 335.98479 * 9 7 2 11 11 C 1.35576 * 107.87630 * 179.97438 * 10 9 7 12 12 C 1.47861 * 126.54337 * 180.18683 * 11 10 9 13 13 C 1.39579 * 120.12078 * 184.99367 * 12 11 10 14 14 C 1.37916 * 119.87978 * 179.76455 * 13 12 11 15 15 C 1.38590 * 120.11649 * 0.48828 * 14 13 12 16 16 F 1.35106 * 119.87773 * 179.74556 * 15 14 13 17 17 C 1.38584 * 120.23937 * 359.76032 * 15 14 13 18 18 C 1.37909 * 120.11883 * 0.02562 * 17 15 14 19 19 N 1.38443 * 106.92191 * 0.41173 * 11 10 9 20 20 C 1.32984 * 125.43765 * 156.29022 * 9 7 2 21 21 C 1.51586 * 141.30771 * 359.75171 * 20 9 7 22 22 C 1.54536 * 104.22164 * 196.59026 * 21 20 9 23 23 C 1.47061 * 141.37997 * 179.55862 * 19 11 10 24 24 H 0.96999 * 119.99923 * 173.95674 * 1 2 3 25 25 H 1.08002 * 126.06420 * 0.09967 * 10 9 7 26 26 H 1.07995 * 120.05958 * 359.97438 * 13 12 11 27 27 H 1.07999 * 119.94390 * 180.22761 * 14 13 12 28 28 H 1.08004 * 119.94122 * 179.97438 * 17 15 14 29 29 H 1.08004 * 120.05980 * 180.02562 * 18 17 15 30 30 H 1.08997 * 110.48062 * 315.27258 * 21 20 9 31 31 H 1.09002 * 110.47872 * 77.77291 * 21 20 9 32 32 H 1.09004 * 110.97980 * 92.98034 * 22 21 20 33 33 H 1.09005 * 110.97813 * 216.76733 * 22 21 20 34 34 H 1.08995 * 110.23737 * 43.96037 * 23 19 11 35 35 H 1.08996 * 110.31102 * 282.01774 * 23 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2450 1.6177 0.0000 4 1 1.2800 2.7465 -0.0006 5 1 3.0987 1.6964 1.2126 6 1 3.0988 1.6963 -1.2125 7 6 2.0089 -1.2089 0.0005 8 1 3.0188 -1.2496 -0.3800 9 7 1.4226 -2.3250 0.4759 10 6 0.4095 -2.3579 1.3633 11 6 0.0977 -3.6575 1.5908 12 6 -0.9579 -4.1646 2.4935 13 6 -1.0969 -5.5369 2.7074 14 6 -2.0801 -6.0041 3.5542 15 6 -2.9357 -5.1144 4.1843 16 9 -3.9005 -5.5777 5.0089 17 6 -2.8054 -3.7512 3.9715 18 6 -1.8229 -3.2730 3.1301 19 7 0.9596 -4.4195 0.8207 20 6 1.7555 -3.5701 0.1484 21 6 2.7239 -4.3458 -0.7226 22 6 2.1144 -5.7639 -0.7980 23 6 1.2850 -5.8181 0.5032 24 1 -0.4850 -0.8354 -0.0884 25 1 -0.0706 -1.5009 1.8121 26 1 -0.4336 -6.2313 2.2134 27 1 -2.1862 -7.0655 3.7233 28 1 -3.4750 -3.0621 4.4647 29 1 -1.7219 -2.2104 2.9652 30 1 2.7821 -3.9023 -1.7165 31 1 3.7110 -4.3767 -0.2612 32 1 1.4740 -5.8673 -1.6741 33 1 2.8949 -6.5248 -0.7950 34 1 0.3714 -6.3910 0.3442 35 1 1.8725 -6.2617 1.3070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017246609.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:05 Heat of formation + Delta-G solvation = 107.536056 kcal Electronic energy + Delta-G solvation = -20469.495263 eV Core-core repulsion = 17271.765610 eV Total energy + Delta-G solvation = -3197.729654 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.01852 -44.60894 -40.19227 -39.13223 -36.14204 -34.33321 -32.60501 -32.05007 -29.84819 -29.69290 -27.01243 -24.70084 -24.19873 -23.67225 -22.49034 -22.04959 -20.50500 -18.91478 -18.37976 -18.18940 -17.42483 -17.04475 -16.71423 -16.62940 -16.00513 -15.66766 -15.46312 -15.40538 -15.02696 -14.92648 -14.78343 -14.40018 -14.04914 -13.86077 -13.72075 -13.42064 -13.09386 -12.95866 -12.53963 -12.27712 -12.23791 -11.92808 -11.69293 -10.83381 -10.66885 -10.44103 -9.50839 -9.14346 -7.00204 -0.65714 -0.05549 0.43463 0.91700 1.00212 1.61786 1.82464 1.90575 2.04885 2.38248 2.44846 2.67545 2.79972 2.86541 3.02803 3.16589 3.31475 3.43886 3.55049 3.67364 3.71094 3.84848 3.91433 3.97763 4.10958 4.19556 4.29248 4.40587 4.44986 4.54221 4.56747 4.62726 4.83189 4.89470 4.97759 5.19292 5.39842 5.46463 5.54956 5.81910 6.31487 6.46561 7.91769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.040 3.960 3 Si 1.082 2.918 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.400 4.400 8 H 0.142 0.858 9 N -0.144 5.144 10 C -0.062 4.062 11 C 0.108 3.892 12 C -0.036 4.036 13 C -0.083 4.083 14 C -0.147 4.147 15 C 0.110 3.890 16 F -0.133 7.133 17 C -0.143 4.143 18 C -0.063 4.063 19 N -0.445 5.445 20 C 0.096 3.904 21 C -0.030 4.030 22 C -0.127 4.127 23 C 0.103 3.897 24 H 0.299 0.701 25 H 0.201 0.799 26 H 0.130 0.870 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -8.089 -0.326 8.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.184 4.184 3 Si 0.899 3.101 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.534 4.534 8 H 0.159 0.841 9 N 0.203 4.797 10 C -0.198 4.198 11 C -0.005 4.005 12 C -0.038 4.038 13 C -0.102 4.102 14 C -0.165 4.165 15 C 0.091 3.909 16 F -0.111 7.111 17 C -0.161 4.161 18 C -0.082 4.082 19 N -0.126 5.126 20 C -0.145 4.145 21 C -0.069 4.069 22 C -0.165 4.165 23 C -0.017 4.017 24 H 0.112 0.888 25 H 0.217 0.783 26 H 0.147 0.853 27 H 0.161 0.839 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.821 -6.687 -0.212 7.261 hybrid contribution -0.207 -1.748 0.190 1.771 sum 2.614 -8.435 -0.023 8.831 Atomic orbital electron populations 1.70743 1.07616 1.34098 1.25540 1.27769 0.95434 1.04226 0.90999 0.83281 0.75768 0.71527 0.79531 1.18160 1.18665 1.18536 1.21443 1.03104 0.85355 1.43498 0.84057 1.37967 1.17504 1.04668 1.19609 1.21949 0.99764 0.97203 1.00835 1.18690 0.95555 0.87455 0.98785 1.17793 0.94818 0.93446 0.97727 1.20996 0.97704 0.93976 0.97522 1.21081 0.96109 1.00639 0.98697 1.17881 0.88354 0.92574 0.92109 1.91555 1.60792 1.89298 1.69485 1.21167 1.00402 0.93949 1.00627 1.21020 0.92710 1.00214 0.94288 1.45319 1.25517 1.08248 1.33492 1.22866 1.03746 0.82095 1.05811 1.20706 0.95496 0.91718 0.98970 1.22773 1.00218 0.96926 0.96574 1.22682 1.01876 0.77636 0.99474 0.88753 0.78267 0.85266 0.83937 0.83556 0.83931 0.87811 0.88192 0.88696 0.87131 0.88001 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -5.16 12.55 55.53 0.70 -4.46 16 2 C 0.04 0.21 5.14 -17.36 -0.09 0.12 16 3 Si 1.08 3.58 29.99 -169.99 -5.10 -1.52 16 4 H -0.26 -1.23 7.11 56.52 0.40 -0.83 16 5 H -0.26 -0.82 7.11 56.52 0.40 -0.42 16 6 H -0.26 -0.78 7.11 56.52 0.40 -0.38 16 7 C -0.40 -1.64 9.75 -15.78 -0.15 -1.79 16 8 H 0.14 0.39 7.95 -52.49 -0.42 -0.03 16 9 N -0.14 -0.38 2.57 -59.38 -0.15 -0.54 16 10 C -0.06 -0.12 8.36 -17.24 -0.14 -0.26 16 11 C 0.11 0.02 6.94 -81.89 -0.57 -0.55 16 12 C -0.04 0.02 5.87 -104.96 -0.62 -0.59 16 13 C -0.08 0.16 9.70 -39.20 -0.38 -0.22 16 14 C -0.15 0.20 10.01 -39.57 -0.40 -0.20 16 15 C 0.11 0.01 7.30 -39.32 -0.29 -0.28 16 16 F -0.13 -0.20 17.26 2.25 0.04 -0.16 16 17 C -0.14 0.11 10.01 -39.57 -0.40 -0.28 16 18 C -0.06 0.06 9.57 -39.20 -0.38 -0.32 16 19 N -0.45 0.67 3.56 -107.68 -0.38 0.29 16 20 C 0.10 -0.01 7.94 -153.42 -1.22 -1.23 16 21 C -0.03 0.12 6.86 -26.64 -0.18 -0.06 16 22 C -0.13 0.83 7.18 -25.19 -0.18 0.65 16 23 C 0.10 -0.56 6.34 -3.00 -0.02 -0.58 16 24 H 0.30 1.86 6.67 -40.82 -0.27 1.59 16 25 H 0.20 0.37 6.24 -52.49 -0.33 0.05 16 26 H 0.13 -0.54 5.68 -52.49 -0.30 -0.84 16 27 H 0.14 -0.44 8.06 -52.49 -0.42 -0.86 16 28 H 0.15 -0.33 8.06 -52.48 -0.42 -0.75 16 29 H 0.14 -0.31 7.05 -52.48 -0.37 -0.68 16 30 H 0.10 -0.43 8.14 -51.93 -0.42 -0.85 16 31 H 0.10 -0.51 8.14 -51.93 -0.42 -0.94 16 32 H 0.09 -0.62 8.14 -51.93 -0.42 -1.04 16 33 H 0.11 -0.94 8.14 -51.93 -0.42 -1.37 16 34 H 0.10 -0.68 7.39 -51.93 -0.38 -1.06 16 35 H 0.10 -0.70 8.14 -51.93 -0.42 -1.12 16 LS Contribution 296.05 15.07 4.46 4.46 Total: 0.00 -7.79 296.05 -9.27 -17.06 By element: Atomic # 1 Polarization: -5.69 SS G_CDS: -3.82 Total: -9.52 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -5.01 Total: -5.60 kcal Atomic # 7 Polarization: -4.87 SS G_CDS: 0.16 Total: -4.71 kcal Atomic # 9 Polarization: -0.20 SS G_CDS: 0.04 Total: -0.16 kcal Atomic # 14 Polarization: 3.58 SS G_CDS: -5.10 Total: -1.52 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -7.79 -9.27 -17.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017246609.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.591 kcal (2) G-P(sol) polarization free energy of solvation -7.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds