Wall clock time and date at job start Mon Mar 30 2020 00:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31098 * 1 3 3 Si 1.86794 * 120.00128 * 2 1 4 4 H 1.48506 * 109.47252 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47149 * 119.99595 * 3 2 1 6 6 H 1.48506 * 109.47080 * 239.99857 * 3 2 1 7 7 C 1.39586 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00215 * 155.99285 * 7 2 1 9 9 N 1.34730 * 120.00068 * 335.98595 * 7 2 1 10 10 C 1.34720 * 125.43923 * 335.98479 * 9 7 2 11 11 C 1.35576 * 107.87630 * 179.97438 * 10 9 7 12 12 C 1.47861 * 126.54337 * 180.18683 * 11 10 9 13 13 C 1.39579 * 120.12078 * 184.99367 * 12 11 10 14 14 C 1.37916 * 119.87978 * 179.76455 * 13 12 11 15 15 C 1.38590 * 120.11649 * 0.48828 * 14 13 12 16 16 F 1.35106 * 119.87773 * 179.74556 * 15 14 13 17 17 C 1.38584 * 120.23937 * 359.76032 * 15 14 13 18 18 C 1.37909 * 120.11883 * 0.02562 * 17 15 14 19 19 N 1.38443 * 106.92191 * 0.41173 * 11 10 9 20 20 C 1.32984 * 125.43765 * 156.29022 * 9 7 2 21 21 C 1.51586 * 141.30771 * 359.75171 * 20 9 7 22 22 C 1.54536 * 104.22164 * 196.59026 * 21 20 9 23 23 C 1.47061 * 141.37997 * 179.55862 * 19 11 10 24 24 H 0.96999 * 119.99923 * 173.95674 * 1 2 3 25 25 H 1.08002 * 126.06420 * 0.09967 * 10 9 7 26 26 H 1.07995 * 120.05958 * 359.97438 * 13 12 11 27 27 H 1.07999 * 119.94390 * 180.22761 * 14 13 12 28 28 H 1.08004 * 119.94122 * 179.97438 * 17 15 14 29 29 H 1.08004 * 120.05980 * 180.02562 * 18 17 15 30 30 H 1.08997 * 110.48062 * 315.27258 * 21 20 9 31 31 H 1.09002 * 110.47872 * 77.77291 * 21 20 9 32 32 H 1.09004 * 110.97980 * 92.98034 * 22 21 20 33 33 H 1.09005 * 110.97813 * 216.76733 * 22 21 20 34 34 H 1.08995 * 110.23737 * 43.96037 * 23 19 11 35 35 H 1.08996 * 110.31102 * 282.01774 * 23 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2450 1.6177 0.0000 4 1 1.2800 2.7465 -0.0006 5 1 3.0987 1.6964 1.2126 6 1 3.0988 1.6963 -1.2125 7 6 2.0089 -1.2089 0.0005 8 1 3.0188 -1.2496 -0.3800 9 7 1.4226 -2.3250 0.4759 10 6 0.4095 -2.3579 1.3633 11 6 0.0977 -3.6575 1.5908 12 6 -0.9579 -4.1646 2.4935 13 6 -1.0969 -5.5369 2.7074 14 6 -2.0801 -6.0041 3.5542 15 6 -2.9357 -5.1144 4.1843 16 9 -3.9005 -5.5777 5.0089 17 6 -2.8054 -3.7512 3.9715 18 6 -1.8229 -3.2730 3.1301 19 7 0.9596 -4.4195 0.8207 20 6 1.7555 -3.5701 0.1484 21 6 2.7239 -4.3458 -0.7226 22 6 2.1144 -5.7639 -0.7980 23 6 1.2850 -5.8181 0.5032 24 1 -0.4850 -0.8354 -0.0884 25 1 -0.0706 -1.5009 1.8121 26 1 -0.4336 -6.2313 2.2134 27 1 -2.1862 -7.0655 3.7233 28 1 -3.4750 -3.0621 4.4647 29 1 -1.7219 -2.2104 2.9652 30 1 2.7821 -3.9023 -1.7165 31 1 3.7110 -4.3767 -0.2612 32 1 1.4740 -5.8673 -1.6741 33 1 2.8949 -6.5248 -0.7950 34 1 0.3714 -6.3910 0.3442 35 1 1.8725 -6.2617 1.3070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017246609.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:05 Heat of formation + Delta-G solvation = 115.148359 kcal Electronic energy + Delta-G solvation = -20469.165169 eV Core-core repulsion = 17271.765610 eV Total energy + Delta-G solvation = -3197.399559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.04258 -44.63236 -40.10179 -39.02086 -36.10640 -34.44658 -32.47873 -31.93804 -29.77208 -29.51815 -27.07999 -24.68271 -24.10341 -23.41388 -22.51577 -21.92569 -20.55676 -18.85567 -18.32889 -18.09697 -17.38913 -17.03787 -16.73061 -16.66456 -15.81775 -15.63277 -15.62248 -15.33377 -14.87967 -14.75439 -14.58968 -14.35612 -13.98187 -13.71985 -13.55042 -13.32748 -13.05298 -12.61628 -12.52214 -12.38469 -12.11379 -12.06100 -11.76333 -11.09899 -10.58337 -10.32069 -9.71550 -9.21666 -7.22618 -0.60853 0.06532 0.40683 0.94684 1.04652 1.48037 1.56048 1.72444 1.76628 2.21028 2.43561 2.48462 2.97843 3.05854 3.12089 3.33950 3.60317 3.69301 3.79365 3.83635 3.98333 4.03804 4.09528 4.18628 4.32846 4.42827 4.46519 4.68613 4.74197 4.77857 4.93238 4.96737 4.98806 5.01828 5.04897 5.19962 5.25503 5.37688 5.63637 5.71804 6.16426 6.36016 7.64724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.023 3.977 3 Si 1.115 2.885 4 H -0.285 1.285 5 H -0.259 1.259 6 H -0.254 1.254 7 C -0.434 4.434 8 H 0.147 0.853 9 N -0.171 5.171 10 C -0.074 4.074 11 C 0.107 3.893 12 C -0.044 4.044 13 C -0.076 4.076 14 C -0.145 4.145 15 C 0.091 3.909 16 F -0.145 7.145 17 C -0.149 4.149 18 C -0.071 4.071 19 N -0.437 5.437 20 C 0.125 3.875 21 C -0.038 4.038 22 C -0.115 4.115 23 C 0.087 3.913 24 H 0.291 0.709 25 H 0.188 0.812 26 H 0.158 0.842 27 H 0.162 0.838 28 H 0.154 0.846 29 H 0.145 0.855 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.121 0.879 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 -11.302 -0.685 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.196 4.196 3 Si 0.932 3.068 4 H -0.210 1.210 5 H -0.184 1.184 6 H -0.177 1.177 7 C -0.566 4.566 8 H 0.165 0.835 9 N 0.174 4.826 10 C -0.209 4.209 11 C -0.007 4.007 12 C -0.046 4.046 13 C -0.094 4.094 14 C -0.164 4.164 15 C 0.071 3.929 16 F -0.124 7.124 17 C -0.168 4.168 18 C -0.090 4.090 19 N -0.116 5.116 20 C -0.120 4.120 21 C -0.077 4.077 22 C -0.152 4.152 23 C -0.030 4.030 24 H 0.104 0.896 25 H 0.205 0.795 26 H 0.175 0.825 27 H 0.180 0.820 28 H 0.172 0.828 29 H 0.162 0.838 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.116 0.884 33 H 0.160 0.840 34 H 0.139 0.861 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.198 -9.886 -0.580 10.756 hybrid contribution -0.603 -1.049 0.326 1.254 sum 3.595 -10.936 -0.254 11.514 Atomic orbital electron populations 1.70789 1.08474 1.33613 1.30354 1.28166 0.95354 1.05813 0.90236 0.82840 0.74660 0.69515 0.79737 1.21027 1.18351 1.17748 1.21291 1.03559 0.85844 1.45906 0.83529 1.38055 1.18479 1.05415 1.20617 1.22001 0.99815 0.97979 1.01114 1.18687 0.95872 0.87110 0.99024 1.17878 0.94660 0.94229 0.97784 1.21261 0.97605 0.93642 0.96927 1.21329 0.95521 1.01432 0.98093 1.18166 0.88808 0.93179 0.92705 1.91521 1.61421 1.89429 1.70009 1.21285 1.00607 0.94125 1.00734 1.21130 0.92871 1.00611 0.94412 1.45846 1.24117 1.09804 1.31838 1.24060 1.02563 0.81546 1.03857 1.21105 0.95575 0.92587 0.98398 1.22866 1.00695 0.95692 0.95984 1.23248 1.03496 0.75318 1.00935 0.89562 0.79510 0.82462 0.82006 0.82841 0.83759 0.87535 0.86267 0.88434 0.84041 0.86101 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -14.14 12.55 21.77 0.27 -13.86 16 2 C 0.02 0.31 5.14 85.13 0.44 0.75 16 3 Si 1.12 9.90 29.99 68.60 2.06 11.96 16 4 H -0.28 -3.64 7.11 99.48 0.71 -2.94 16 5 H -0.26 -2.01 7.11 99.48 0.71 -1.30 16 6 H -0.25 -1.80 7.11 99.48 0.71 -1.09 16 7 C -0.43 -4.49 9.75 84.57 0.82 -3.66 16 8 H 0.15 1.06 7.95 -2.91 -0.02 1.04 16 9 N -0.17 -1.12 2.57 -341.79 -0.88 -2.00 16 10 C -0.07 -0.42 8.36 83.63 0.70 0.28 16 11 C 0.11 0.03 6.94 40.03 0.28 0.31 16 12 C -0.04 0.07 5.87 -20.08 -0.12 -0.05 16 13 C -0.08 0.42 9.70 22.52 0.22 0.64 16 14 C -0.15 0.57 10.01 22.28 0.22 0.79 16 15 C 0.09 0.03 7.30 22.44 0.16 0.20 16 16 F -0.15 -0.53 17.26 44.97 0.78 0.25 16 17 C -0.15 0.09 10.01 22.27 0.22 0.31 16 18 C -0.07 0.05 9.57 22.52 0.22 0.27 16 19 N -0.44 2.09 3.56 -494.58 -1.76 0.33 16 20 C 0.13 -0.15 7.94 137.87 1.10 0.95 16 21 C -0.04 0.40 6.86 30.65 0.21 0.61 16 22 C -0.11 1.95 7.18 31.59 0.23 2.17 16 23 C 0.09 -1.29 6.34 86.75 0.55 -0.74 16 24 H 0.29 4.83 6.67 -92.71 -0.62 4.21 16 25 H 0.19 1.40 6.24 -2.91 -0.02 1.38 16 26 H 0.16 -1.86 5.68 -2.91 -0.02 -1.88 16 27 H 0.16 -1.32 8.06 -2.91 -0.02 -1.35 16 28 H 0.15 -0.47 8.06 -2.91 -0.02 -0.49 16 29 H 0.14 -0.26 7.05 -2.91 -0.02 -0.28 16 30 H 0.11 -1.08 8.14 -2.39 -0.02 -1.10 16 31 H 0.12 -1.60 8.14 -2.39 -0.02 -1.62 16 32 H 0.10 -1.63 8.14 -2.38 -0.02 -1.64 16 33 H 0.14 -3.15 8.14 -2.38 -0.02 -3.17 16 34 H 0.12 -2.15 7.39 -2.39 -0.02 -2.16 16 35 H 0.13 -2.34 8.14 -2.39 -0.02 -2.36 16 Total: 0.00 -22.24 296.05 6.97 -15.26 By element: Atomic # 1 Polarization: -16.01 SS G_CDS: 1.26 Total: -14.75 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 5.25 Total: 2.82 kcal Atomic # 7 Polarization: -13.17 SS G_CDS: -2.37 Total: -15.54 kcal Atomic # 9 Polarization: -0.53 SS G_CDS: 0.78 Total: 0.25 kcal Atomic # 14 Polarization: 9.90 SS G_CDS: 2.06 Total: 11.96 kcal Total: -22.24 6.97 -15.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017246609.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.410 kcal (2) G-P(sol) polarization free energy of solvation -22.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds