Wall clock time and date at job start Mon Mar 30 2020 01:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33410 * 120.00052 * 2 1 4 4 C 1.46330 * 120.00188 * 179.97438 * 3 2 1 5 5 C 1.35202 * 120.00430 * 179.97438 * 4 3 2 6 6 C 1.46209 * 120.00418 * 180.02562 * 5 4 3 7 7 O 1.21738 * 119.99928 * 0.02562 * 6 5 4 8 8 N 1.34782 * 120.00239 * 180.02562 * 6 5 4 9 9 C 1.39865 * 119.99805 * 174.78882 * 8 6 5 10 10 C 1.38963 * 120.00344 * 146.29760 * 9 8 6 11 11 C 1.37986 * 119.99580 * 179.97438 * 10 9 8 12 12 C 1.38922 * 120.00752 * 359.97438 * 11 10 9 13 13 O 1.35769 * 119.99636 * 179.97438 * 12 11 10 14 14 C 1.34807 * 117.00014 * 5.90736 * 13 12 11 15 15 H 1.07997 * 120.00547 * 5.40896 * 14 13 12 16 16 C 1.38644 * 119.99837 * 185.40132 * 14 13 12 17 17 N 1.31565 * 120.00000 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99736 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46759 * 90.00583 * 18 16 14 20 20 H 1.48499 * 109.47195 * 210.00112 * 18 16 14 21 21 H 1.48501 * 109.47419 * 330.00480 * 18 16 14 22 22 C 1.38921 * 120.00366 * 0.25171 * 12 11 10 23 23 C 1.37990 * 120.00828 * 359.49433 * 22 12 11 24 24 H 1.09001 * 109.47121 * 59.99744 * 1 2 3 25 25 H 1.09004 * 109.47443 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47435 * 300.00017 * 1 2 3 27 27 H 1.08001 * 120.00126 * 180.02562 * 2 1 3 28 28 H 1.08001 * 119.99822 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.99990 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.99580 * 0.02562 * 5 4 3 31 31 H 0.96995 * 119.99456 * 354.78912 * 8 6 5 32 32 H 1.07998 * 119.99969 * 359.94795 * 10 9 8 33 33 H 1.07995 * 119.99855 * 179.97438 * 11 10 9 34 34 H 0.96997 * 120.00358 * 179.97438 * 17 16 14 35 35 H 1.08004 * 119.99415 * 179.74224 * 22 12 11 36 36 H 1.07999 * 120.00510 * 180.22536 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1740 1.1554 0.0000 4 6 3.6373 1.1554 0.0006 5 6 4.3134 2.3262 0.0000 6 6 5.7755 2.3263 0.0000 7 8 6.3842 1.2720 0.0000 8 7 6.4494 3.4935 0.0000 9 6 7.8438 3.4959 0.1101 10 6 8.5909 4.4669 -0.5457 11 6 9.9664 4.4695 -0.4367 12 6 10.6044 3.5018 0.3291 13 8 11.9579 3.5042 0.4359 14 6 12.6140 4.5408 -0.1230 15 1 12.0600 5.3637 -0.5499 16 6 14.0002 4.5506 -0.1495 17 7 14.6752 3.5480 0.3703 18 14 14.9094 5.9873 -0.9232 19 1 15.1694 7.0223 0.1094 20 1 16.1998 5.5123 -1.4839 21 1 14.0817 6.5694 -2.0102 22 6 9.8580 2.5282 0.9810 23 6 8.4821 2.5284 0.8764 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.0470 -0.9353 -0.0004 28 1 1.6340 2.0907 0.0004 29 1 4.1774 0.2201 0.0006 30 1 3.7734 3.2616 -0.0004 31 1 5.9674 4.3317 -0.0763 32 1 8.0949 5.2192 -1.1411 33 1 10.5471 5.2238 -0.9466 34 1 15.6449 3.5546 0.3514 35 1 10.3545 1.7735 1.5729 36 1 7.9016 1.7736 1.3862 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018829843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:13 Heat of formation + Delta-G solvation = -7.351181 kcal Electronic energy + Delta-G solvation = -18920.160624 eV Core-core repulsion = 15756.846468 eV Total energy + Delta-G solvation = -3163.314156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.06298 -38.64777 -36.65891 -35.94581 -33.90894 -32.54029 -32.13552 -30.20001 -28.49690 -27.10669 -25.34054 -23.17011 -22.17956 -20.92587 -19.97188 -19.66347 -18.01522 -17.31253 -17.11006 -16.34459 -14.98531 -14.91575 -14.63553 -14.54995 -14.20082 -13.75702 -13.64227 -13.53884 -13.38010 -12.78016 -12.50328 -12.44489 -12.10167 -11.81714 -11.61610 -11.55895 -11.54006 -11.08455 -11.02519 -10.65103 -10.44066 -9.79160 -9.61697 -9.21874 -8.71796 -8.59284 -8.18801 -6.88857 -6.43115 -4.00873 0.55216 2.12125 2.22040 2.50626 3.13557 3.14422 3.19418 3.40303 3.49826 3.98106 4.44925 4.59882 4.64246 4.85450 5.04503 5.07467 5.12582 5.18272 5.30385 5.33407 5.49770 5.57752 5.79152 5.82211 6.12174 6.16755 6.19978 6.25334 6.34071 6.44647 6.82094 6.87925 7.02500 7.17879 7.23829 7.42769 7.76067 7.81088 8.01309 8.42571 9.02164 9.73148 10.74922 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.066846 B = 0.002602 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.774558 B =10756.770378 C =11062.934595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.124 4.124 3 C -0.153 4.153 4 C -0.037 4.037 5 C -0.207 4.207 6 C 0.535 3.465 7 O -0.534 6.534 8 N -0.656 5.656 9 C 0.037 3.963 10 C -0.091 4.091 11 C -0.219 4.219 12 C 0.146 3.854 13 O -0.176 6.176 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.178 4.178 23 C -0.067 4.067 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.402 0.598 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.270 0.730 35 H 0.121 0.879 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.670 -0.431 -1.088 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.142 4.142 3 C -0.171 4.171 4 C -0.057 4.057 5 C -0.227 4.227 6 C 0.325 3.675 7 O -0.412 6.412 8 N -0.299 5.299 9 C -0.056 4.056 10 C -0.111 4.111 11 C -0.239 4.239 12 C 0.092 3.908 13 O -0.080 6.080 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.497 5.497 18 Si 0.766 3.234 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.197 4.197 23 C -0.087 4.087 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.237 0.763 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.836 -1.398 -0.938 22.898 hybrid contribution 0.206 1.293 -0.544 1.418 sum -22.630 -0.105 -1.482 22.679 Atomic orbital electron populations 1.20919 0.92604 1.02830 1.02366 1.23750 0.96420 0.98028 0.96010 1.21819 0.92865 0.98618 1.03794 1.22538 0.93171 0.98684 0.91310 1.22923 0.93086 0.99226 1.07511 1.18376 0.88039 0.83874 0.77198 1.90835 1.70116 1.31015 1.49256 1.43123 1.05849 1.08612 1.72327 1.17246 0.81429 1.01861 1.05045 1.20487 0.93535 0.98516 0.98559 1.20977 0.93758 1.03296 1.05844 1.19423 0.85222 0.93168 0.92957 1.84000 1.12471 1.44230 1.67277 1.21306 0.89237 0.97484 1.38707 0.89109 1.25296 0.95596 0.98572 0.97145 1.70043 1.07756 1.30135 1.41722 0.85710 0.78931 0.79660 0.79098 1.19902 1.20282 1.19230 1.20124 0.92482 1.01312 1.05831 1.20608 0.93469 0.97692 0.96891 0.91158 0.91661 0.91143 0.86645 0.86400 0.85210 0.85559 0.76334 0.87141 0.85094 0.92019 0.86103 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.62 10.19 36.00 0.37 -0.25 16 2 C -0.12 -0.82 9.98 -36.00 -0.36 -1.18 16 3 C -0.15 -1.16 9.48 -38.02 -0.36 -1.52 16 4 C -0.04 -0.37 9.38 -37.41 -0.35 -0.73 16 5 C -0.21 -2.20 9.71 -37.46 -0.36 -2.56 16 6 C 0.54 8.01 7.47 -13.06 -0.10 7.92 16 7 O -0.53 -10.18 13.94 5.16 0.07 -10.11 16 8 N -0.66 -9.42 5.33 -11.14 -0.06 -9.48 16 9 C 0.04 0.68 6.27 -83.66 -0.52 0.15 16 10 C -0.09 -1.68 9.96 -39.41 -0.39 -2.07 16 11 C -0.22 -4.79 9.12 -39.42 -0.36 -5.15 16 12 C 0.15 3.62 6.65 -39.08 -0.26 3.36 16 13 O -0.18 -5.11 9.75 0.05 0.00 -5.11 16 14 C -0.39 -10.98 9.44 30.88 0.29 -10.69 16 15 H 0.09 2.34 5.29 -52.49 -0.28 2.06 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 17 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 18 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 C -0.18 -4.01 9.98 -39.42 -0.39 -4.40 16 23 C -0.07 -1.36 8.65 -39.41 -0.34 -1.70 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.12 0.73 8.05 -52.49 -0.42 0.31 16 28 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 29 H 0.13 1.45 7.52 -52.49 -0.39 1.06 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.40 4.18 8.80 -40.82 -0.36 3.82 16 32 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.13 2.82 5.71 -52.49 -0.30 2.52 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.12 2.63 8.06 -52.48 -0.42 2.21 16 36 H 0.12 2.46 6.43 -52.49 -0.34 2.12 16 LS Contribution 322.11 15.07 4.85 4.85 Total: -1.00 -33.51 322.11 -6.82 -40.34 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.19 Total: 6.55 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -3.24 Total: -17.86 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.70 Total: -34.21 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.07 Total: -15.22 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.51 -6.82 -40.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018829843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.985 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds