Wall clock time and date at job start Mon Mar 30 2020 01:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99974 * 2 1 4 4 H 1.48495 * 109.46947 * 240.00013 * 3 2 1 5 5 H 1.48496 * 109.46870 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46758 * 119.99900 * 3 2 1 7 7 C 1.38798 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99790 * 179.72600 * 7 2 1 9 9 S 1.76198 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00029 * 179.72594 * 9 7 2 11 11 C 1.50699 * 109.46755 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00479 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99840 * 179.97438 * 11 10 9 14 14 C 1.46921 * 120.62910 * 354.47343 * 13 11 10 15 15 C 1.53192 * 108.77499 * 126.36681 * 14 13 11 16 16 C 1.53038 * 109.31290 * 54.63731 * 15 14 13 17 17 C 1.53044 * 109.53440 * 298.63104 * 16 15 14 18 18 C 1.46925 * 120.63021 * 174.18886 * 13 11 10 19 19 H 1.09004 * 109.58741 * 113.84843 * 18 13 11 20 20 C 1.52997 * 109.58949 * 353.42228 * 18 13 11 21 21 C 1.52997 * 109.47576 * 181.66115 * 20 18 13 22 22 O 1.42898 * 109.47342 * 185.08039 * 21 20 18 23 23 H 0.97002 * 119.99689 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47353 * 299.99951 * 10 9 7 25 25 H 1.09000 * 109.47241 * 60.00243 * 10 9 7 26 26 H 1.09003 * 109.58487 * 246.15447 * 14 13 11 27 27 H 1.09004 * 109.59107 * 6.57496 * 14 13 11 28 28 H 1.09010 * 109.49504 * 174.58609 * 15 14 13 29 29 H 1.09000 * 109.49738 * 294.67581 * 15 14 13 30 30 H 1.08991 * 109.46609 * 58.65125 * 16 15 14 31 31 H 1.09001 * 109.45594 * 178.63148 * 16 15 14 32 32 H 1.09003 * 109.49411 * 181.32071 * 17 16 15 33 33 H 1.09002 * 109.49791 * 301.38367 * 17 16 15 34 34 H 1.09003 * 109.47024 * 301.66113 * 20 18 13 35 35 H 1.09011 * 109.47076 * 61.65687 * 20 18 13 36 36 H 1.09000 * 109.47054 * 305.08317 * 21 20 18 37 37 H 1.09001 * 109.46806 * 65.07599 * 21 20 18 38 38 H 0.96696 * 113.99803 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0050 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0099 11 6 1.9872 -5.3026 -0.0105 12 8 0.7910 -5.5022 -0.0057 13 7 2.8440 -6.3431 -0.0175 14 6 4.2905 -6.1207 -0.1463 15 6 5.0029 -6.8261 1.0121 16 6 4.5933 -8.3004 1.0356 17 6 3.0832 -8.4085 1.2597 18 6 2.3496 -7.7208 0.1097 19 1 2.5377 -8.2636 -0.8166 20 6 0.8476 -7.7020 0.4005 21 6 0.3435 -9.1361 0.5735 22 8 -1.0772 -9.1264 0.7272 23 1 -0.4850 0.8401 -0.0004 24 1 3.1204 -3.7290 -0.9021 25 1 3.1284 -3.7337 0.8778 26 1 4.6402 -6.5303 -1.0940 27 1 4.5009 -5.0519 -0.1081 28 1 6.0818 -6.7503 0.8759 29 1 4.7207 -6.3549 1.9536 30 1 4.8534 -8.7649 0.0845 31 1 5.1175 -8.8100 1.8441 32 1 2.7957 -9.4592 1.2997 33 1 2.8191 -7.9230 2.1992 34 1 0.6616 -7.1387 1.3149 35 1 0.3226 -7.2300 -0.4302 36 1 0.6099 -9.7234 -0.3053 37 1 0.8018 -9.5780 1.4582 38 1 -1.4663 -10.0042 0.8422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037863794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:19 Heat of formation + Delta-G solvation = -110.630872 kcal Electronic energy + Delta-G solvation = -19412.640621 eV Core-core repulsion = 16380.291873 eV Total energy + Delta-G solvation = -3032.348748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.57909 -38.51142 -37.77954 -34.60064 -34.58974 -33.74279 -30.57506 -29.62471 -27.69509 -25.75302 -24.86348 -22.30393 -21.98019 -20.38631 -19.46497 -18.39897 -17.68156 -17.17242 -16.88646 -16.67634 -16.10691 -15.87331 -15.30011 -15.05274 -14.84713 -14.73267 -14.47614 -14.22467 -13.97589 -13.44601 -13.27619 -13.17516 -12.87300 -12.65639 -12.56979 -12.37585 -12.05928 -11.89674 -11.73050 -11.58972 -11.48274 -11.13559 -10.84008 -10.26785 -10.04678 -9.57578 -8.68214 -8.34956 -6.13827 1.25018 1.43404 1.45113 1.54862 1.59654 2.08416 2.27274 2.98955 3.17713 3.35470 3.76408 3.83209 3.87421 4.03428 4.09061 4.20013 4.24148 4.31744 4.38065 4.42395 4.47637 4.53239 4.62602 4.74327 4.85811 4.95061 5.07078 5.11173 5.20886 5.26578 5.37923 5.40041 5.48374 5.73792 6.18562 6.33728 6.96930 7.05714 7.21475 8.74183 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.004656 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.946801 B = 6012.160289 C = 7061.788626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.153 6.153 10 C -0.124 4.124 11 C 0.528 3.472 12 O -0.550 6.550 13 N -0.607 5.607 14 C 0.098 3.902 15 C -0.133 4.133 16 C -0.114 4.114 17 C -0.130 4.130 18 C 0.153 3.847 19 H 0.091 0.909 20 C -0.112 4.112 21 C 0.075 3.925 22 O -0.601 6.601 23 H 0.271 0.729 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.168 -20.630 1.168 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.075 5.925 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.428 6.428 13 N -0.341 5.341 14 C -0.024 4.024 15 C -0.172 4.172 16 C -0.151 4.151 17 C -0.168 4.168 18 C 0.051 3.949 19 H 0.109 0.891 20 C -0.150 4.150 21 C -0.003 4.003 22 O -0.410 6.410 23 H 0.080 0.920 24 H 0.123 0.877 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 11.360 -20.207 1.107 23.207 hybrid contribution 1.120 0.977 0.126 1.491 sum 12.479 -19.229 1.233 22.957 Atomic orbital electron populations 1.70188 1.08058 1.28690 1.47931 1.26145 0.95944 1.03348 0.93637 0.84995 0.77810 0.75583 0.79552 1.18523 1.20346 1.18618 1.23161 0.95289 0.91982 1.59072 0.89987 1.85602 1.10654 0.99283 1.97007 1.23411 1.03273 0.94910 1.05906 1.20153 0.86269 0.86518 0.75544 1.90763 1.17204 1.84883 1.49954 1.48159 1.07851 1.05318 1.72813 1.22074 0.77530 1.02289 1.00500 1.21941 1.01350 0.96315 0.97550 1.21522 0.94144 0.95870 1.03602 1.22010 0.96525 1.01443 0.96823 1.21186 0.92342 0.81371 1.00036 0.89084 1.21875 0.95033 0.95584 1.02461 1.22385 0.80693 0.96329 1.00856 1.86526 1.21953 1.36128 1.96346 0.91984 0.87715 0.88052 0.88994 0.89781 0.88133 0.92881 0.90046 0.89955 0.88243 0.93155 0.94413 0.91945 0.91651 0.91620 0.75422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.18 13.22 21.65 0.29 -56.90 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 44.12 29.55 68.60 2.03 46.15 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.55 -31.93 9.50 67.95 0.65 -31.28 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.78 20.57 -56.49 -1.16 -9.94 16 10 C -0.12 -5.19 4.51 71.24 0.32 -4.87 16 11 C 0.53 20.85 7.55 87.66 0.66 21.51 16 12 O -0.55 -26.47 11.43 -3.01 -0.03 -26.50 16 13 N -0.61 -16.99 2.98 -795.83 -2.37 -19.36 16 14 C 0.10 1.91 6.35 86.36 0.55 2.45 16 15 C -0.13 -1.96 6.08 30.67 0.19 -1.77 16 16 C -0.11 -1.37 5.89 30.62 0.18 -1.19 16 17 C -0.13 -2.15 4.79 30.53 0.15 -2.00 16 18 C 0.15 3.58 3.02 44.83 0.14 3.72 16 19 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 20 C -0.11 -3.47 3.54 30.59 0.11 -3.36 16 21 C 0.08 1.66 6.51 71.98 0.47 2.13 16 22 O -0.60 -15.81 13.66 -148.98 -2.04 -17.84 16 23 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 24 H 0.10 3.97 7.71 -2.40 -0.02 3.96 16 25 H 0.10 3.92 7.92 -2.40 -0.02 3.90 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 1.75 5.93 -2.38 -0.01 1.73 16 28 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 1.15 6.85 -2.39 -0.02 1.13 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.04 1.44 7.26 -2.39 -0.02 1.43 16 35 H 0.06 2.49 6.22 -2.38 -0.01 2.47 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.11 6.83 -2.39 -0.02 1.09 16 38 H 0.40 5.61 9.12 -74.06 -0.68 4.93 16 Total: -1.00 -81.70 315.05 0.96 -80.74 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.38 Total: 17.05 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 3.87 Total: -13.40 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -2.08 Total: -76.26 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -2.07 Total: -44.35 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -81.70 0.96 -80.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037863794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.892 kcal (2) G-P(sol) polarization free energy of solvation -81.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds