Wall clock time and date at job start Mon Mar 30 2020 01:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00051 * 2 1 4 4 H 1.48493 * 109.47509 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47030 * 300.00047 * 3 2 1 6 6 H 1.48503 * 109.47020 * 59.99846 * 3 2 1 7 7 C 1.38799 * 120.00491 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00410 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99692 * 359.72967 * 7 2 1 10 10 C 1.80993 * 100.00060 * 180.27198 * 9 7 2 11 11 C 1.50703 * 109.47261 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99642 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99979 * 179.97438 * 11 10 9 14 14 C 1.46931 * 120.63265 * 354.59218 * 13 11 10 15 15 C 1.52763 * 109.00821 * 233.58496 * 14 13 11 16 16 C 1.53037 * 109.38272 * 305.58735 * 15 14 13 17 17 C 1.53039 * 109.53835 * 61.24033 * 16 15 14 18 18 C 1.46921 * 120.62747 * 174.87405 * 13 11 10 19 19 H 1.09008 * 109.58364 * 246.15138 * 18 13 11 20 20 C 1.52991 * 109.58920 * 6.57929 * 18 13 11 21 21 C 1.53010 * 109.47249 * 181.17173 * 20 18 13 22 22 O 1.42897 * 109.46805 * 174.79175 * 21 20 18 23 23 H 0.96996 * 119.99771 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47437 * 299.99933 * 10 9 7 25 25 H 1.09006 * 109.47366 * 59.99796 * 10 9 7 26 26 H 1.09000 * 109.58470 * 353.41869 * 14 13 11 27 27 H 1.08990 * 109.58584 * 113.84297 * 14 13 11 28 28 H 1.08998 * 109.56319 * 185.54881 * 15 14 13 29 29 H 1.09005 * 109.38684 * 65.51406 * 15 14 13 30 30 H 1.08998 * 109.46027 * 301.22418 * 16 15 14 31 31 H 1.08997 * 109.45916 * 181.25783 * 16 15 14 32 32 H 1.09005 * 109.50091 * 178.68052 * 17 16 15 33 33 H 1.09001 * 109.49874 * 58.58648 * 17 16 15 34 34 H 1.09006 * 109.47236 * 301.16831 * 20 18 13 35 35 H 1.09000 * 109.47162 * 61.16899 * 20 18 13 36 36 H 1.09004 * 109.46708 * 294.78587 * 21 20 18 37 37 H 1.08999 * 109.46854 * 54.78939 * 21 20 18 38 38 H 0.96705 * 113.99668 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0084 10 6 2.5160 -3.8913 0.0145 11 6 1.9875 -5.3026 0.0224 12 8 0.7913 -5.5022 0.0234 13 7 2.8444 -6.3430 0.0274 14 6 4.2918 -6.1214 -0.0939 15 6 4.8299 -6.9679 -1.2461 16 6 4.4335 -8.4302 -1.0302 17 6 2.9079 -8.5496 -1.0123 18 6 2.3483 -7.7206 0.1481 19 1 2.6802 -8.1468 1.0949 20 6 0.8195 -7.7223 0.0893 21 6 0.3047 -9.1549 0.2445 22 8 -1.1227 -9.1433 0.3112 23 1 -0.4849 0.8400 0.0004 24 1 3.1246 -3.7359 -0.8763 25 1 3.1246 -3.7266 0.9037 26 1 4.4844 -5.0676 -0.2955 27 1 4.7852 -6.4144 0.8327 28 1 5.9163 -6.8869 -1.2821 29 1 4.4072 -6.6112 -2.1854 30 1 4.8362 -8.7790 -0.0793 31 1 4.8359 -9.0388 -1.8400 32 1 2.6262 -9.5946 -0.8820 33 1 2.5028 -8.1779 -1.9535 34 1 0.4242 -7.1048 0.8959 35 1 0.4924 -7.3206 -0.8697 36 1 0.6236 -9.7502 -0.6111 37 1 0.7079 -9.5886 1.1596 38 1 -1.5188 -10.0200 0.4097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037863795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:21 Heat of formation + Delta-G solvation = -110.302623 kcal Electronic energy + Delta-G solvation = -19401.549107 eV Core-core repulsion = 16369.214593 eV Total energy + Delta-G solvation = -3032.334514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.57844 -38.49024 -37.78426 -34.60161 -34.57867 -33.76051 -30.55875 -29.65340 -27.70074 -25.75185 -24.82630 -22.33464 -21.97285 -20.41023 -19.44777 -18.38458 -17.62530 -17.14045 -16.89158 -16.76079 -16.12261 -15.91078 -15.34530 -15.01451 -14.82334 -14.70468 -14.46046 -14.18922 -13.99447 -13.46303 -13.27336 -13.16594 -12.92646 -12.65211 -12.55869 -12.38269 -12.06544 -11.87706 -11.69895 -11.58158 -11.48199 -11.16723 -10.82637 -10.26073 -10.07338 -9.54278 -8.68228 -8.35575 -6.14133 1.25301 1.40774 1.45377 1.56819 1.59835 2.08445 2.26684 2.98603 3.18053 3.35410 3.75602 3.83381 3.87190 4.04096 4.09036 4.20793 4.24960 4.31359 4.38384 4.42536 4.47724 4.53469 4.62593 4.75063 4.85854 4.95014 5.07131 5.12096 5.20708 5.27485 5.37811 5.40478 5.48642 5.73702 6.18811 6.33590 6.97019 7.05499 7.21338 8.74098 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.004630 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.577656 B = 6045.627835 C = 7107.358810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.082 0.918 9 S -0.153 6.153 10 C -0.124 4.124 11 C 0.527 3.473 12 O -0.549 6.549 13 N -0.606 5.606 14 C 0.098 3.902 15 C -0.133 4.133 16 C -0.114 4.114 17 C -0.130 4.130 18 C 0.152 3.848 19 H 0.093 0.907 20 C -0.107 4.107 21 C 0.074 3.926 22 O -0.601 6.601 23 H 0.271 0.729 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.033 -20.760 -0.526 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.100 0.900 9 S 0.074 5.926 10 C -0.275 4.275 11 C 0.314 3.686 12 O -0.427 6.427 13 N -0.341 5.341 14 C -0.023 4.023 15 C -0.172 4.172 16 C -0.151 4.151 17 C -0.168 4.168 18 C 0.050 3.950 19 H 0.111 0.889 20 C -0.145 4.145 21 C -0.004 4.004 22 O -0.409 6.409 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 11.237 -20.339 -0.584 23.245 hybrid contribution 1.080 0.977 -0.016 1.457 sum 12.318 -19.362 -0.601 22.956 Atomic orbital electron populations 1.70198 1.08061 1.28565 1.48083 1.26146 0.95947 1.03361 0.93667 0.84889 0.78625 0.76204 0.78118 1.17920 1.19874 1.19873 1.23228 0.95293 0.91957 1.58834 0.89980 1.85609 1.10685 0.99323 1.96994 1.23419 1.03268 0.94894 1.05930 1.20153 0.86270 0.86522 0.75645 1.90787 1.17207 1.84917 1.49836 1.48150 1.07788 1.05303 1.72876 1.21974 0.77974 1.01722 1.00675 1.21865 1.02276 0.95732 0.97282 1.21520 0.94025 0.95946 1.03639 1.22075 0.97195 1.00528 0.96973 1.21311 0.92527 0.80992 1.00195 0.88900 1.21856 0.94429 0.95512 1.02682 1.22405 0.80513 0.96475 1.01002 1.86530 1.21128 1.36222 1.97059 0.91987 0.87901 0.87819 0.89835 0.88986 0.88044 0.93009 0.89989 0.89990 0.88344 0.93245 0.92680 0.93861 0.91569 0.91760 0.75441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.17 13.22 21.65 0.29 -56.88 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 44.19 29.55 68.60 2.03 46.22 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.81 9.50 67.95 0.65 -31.17 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.81 20.57 -56.49 -1.16 -9.97 16 10 C -0.12 -5.19 4.56 71.24 0.33 -4.86 16 11 C 0.53 20.78 7.63 87.66 0.67 21.45 16 12 O -0.55 -26.42 11.27 -3.03 -0.03 -26.46 16 13 N -0.61 -16.95 2.98 -795.85 -2.37 -19.33 16 14 C 0.10 1.91 6.30 86.22 0.54 2.45 16 15 C -0.13 -1.97 6.06 30.53 0.19 -1.78 16 16 C -0.11 -1.38 5.89 30.62 0.18 -1.20 16 17 C -0.13 -2.17 4.90 30.67 0.15 -2.02 16 18 C 0.15 3.55 3.00 44.97 0.13 3.69 16 19 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 20 C -0.11 -3.32 3.50 30.59 0.11 -3.21 16 21 C 0.07 1.63 6.60 71.99 0.47 2.11 16 22 O -0.60 -15.85 13.66 -148.98 -2.03 -17.89 16 23 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 24 H 0.10 3.94 7.46 -2.39 -0.02 3.92 16 25 H 0.10 3.96 8.12 -2.39 -0.02 3.94 16 26 H 0.08 1.74 5.96 -2.39 -0.01 1.72 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.95 8.14 -2.38 -0.02 0.94 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 1.16 6.92 -2.38 -0.02 1.14 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 2.20 6.35 -2.38 -0.02 2.18 16 35 H 0.04 1.65 7.12 -2.39 -0.02 1.64 16 36 H 0.07 1.11 6.90 -2.38 -0.02 1.10 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.40 5.64 9.12 -74.05 -0.68 4.96 16 Total: -1.00 -81.80 315.20 0.97 -80.82 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.38 Total: 16.79 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 3.88 Total: -13.31 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -2.08 Total: -76.21 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -2.07 Total: -44.35 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -81.80 0.97 -80.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037863795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.479 kcal (2) G-P(sol) polarization free energy of solvation -81.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds